Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735768
Identifier: 187735768
GI number: 187735768
Start: 1535136
End: 1536047
Strand: Reverse
Name: 187735768
Synonym: Amuc_1274
Alternate gene names: NA
Gene position: 1536047-1535136 (Counterclockwise)
Preceding gene: 187735769
Following gene: 187735767
Centisome position: 57.66
GC content: 47.92
Gene sequence:
>912_bases ATGATGAAATATTTTATTTATGCGATTGCCGCCATACATCTTGGCTGTTCAACTTCCCTTGGGGAAGAGACCGGATTTGA TCGCCAACTCCCGGCTCCTGATTCCATCCATATTCGCGGACAAATGGGAGAAAAATCAAAAAAATTAAAAGAATTTTTTA AATCAGGAAATTTTAAACAATTCTATGGATATTCAAACACAGTTCTGTCAGAACTGAACGCCATGCGGCGCCATGGAACG ATGACGCGGGAAGAGGCCTGCGACATGCTCTGGAGCCTTTATCTGATCAGCGGAGCCCCCATGTATGAAGCTCCGGATTA CGACAGCGTTCAGCCATGGCCTTATAAAGACGAGCGGAACAACGACATTGCCGCCAAATCAAGAGTCATTTCCGCGCTCT CCATCATGGATACGAAACAGATGTCGCACAACCTGGGCATCCACGAACAACGGCTGAAACATCTCCATGCCGCTTACGCC GCCGCCATCATTAAAAGGCTGAAATCTCTGCACCTCCCTGATTTCGGGAAAAAAGAGACAGCGCTGAAAGATGAAATAAT ACGTTCCCATCCTGCCAATCCGGACGGGAATGTCATCGGAACGCACCCGAGTGACTATAGCAACCTTCTTCGCATAGGCA ATTTAAATTATTTTTCCATGAGAAACAGCATGTACCATAGCTATGTCTCTAAAATCATGGAGAAAAGATTTATCCCCATG CTGGTGAAGTACTTCCCCGACCAGGCCGGAGAAGTCGTCAAATACATCAGGAAGGCGGGATACGGAGACGGCGAGGTTCT CGACCTCATCGACCGAACGGCAGGATACAACTCCAAAACCGCCTACCTCTACCAGGGGAAAAGCGGAGAGGAACACAGGA AAAAGCTTCAGCGGAAACAGAGCGGAGAGTGA
Upstream 100 bases:
>100_bases CGACGACGGTTTCCAAATTCAATTGTTCCGTCAGCAGATCCACAGAAAAAAATAACAAGCACGTATTTATCAACCAGTCA AAATAAATGAACCTAAAAAA
Downstream 100 bases:
>100_bases CGCCGAACGTTCATTCATTGCGCCATCTGCCTCCTCCCAACCAGGAAAAACAACCCGGACAAGACGGTGAACCACGTTCT CCATATAATCATCTTCATCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 303; Mature: 303
Protein sequence:
>303_residues MMKYFIYAIAAIHLGCSTSLGEETGFDRQLPAPDSIHIRGQMGEKSKKLKEFFKSGNFKQFYGYSNTVLSELNAMRRHGT MTREEACDMLWSLYLISGAPMYEAPDYDSVQPWPYKDERNNDIAAKSRVISALSIMDTKQMSHNLGIHEQRLKHLHAAYA AAIIKRLKSLHLPDFGKKETALKDEIIRSHPANPDGNVIGTHPSDYSNLLRIGNLNYFSMRNSMYHSYVSKIMEKRFIPM LVKYFPDQAGEVVKYIRKAGYGDGEVLDLIDRTAGYNSKTAYLYQGKSGEEHRKKLQRKQSGE
Sequences:
>Translated_303_residues MMKYFIYAIAAIHLGCSTSLGEETGFDRQLPAPDSIHIRGQMGEKSKKLKEFFKSGNFKQFYGYSNTVLSELNAMRRHGT MTREEACDMLWSLYLISGAPMYEAPDYDSVQPWPYKDERNNDIAAKSRVISALSIMDTKQMSHNLGIHEQRLKHLHAAYA AAIIKRLKSLHLPDFGKKETALKDEIIRSHPANPDGNVIGTHPSDYSNLLRIGNLNYFSMRNSMYHSYVSKIMEKRFIPM LVKYFPDQAGEVVKYIRKAGYGDGEVLDLIDRTAGYNSKTAYLYQGKSGEEHRKKLQRKQSGE >Mature_303_residues MMKYFIYAIAAIHLGCSTSLGEETGFDRQLPAPDSIHIRGQMGEKSKKLKEFFKSGNFKQFYGYSNTVLSELNAMRRHGT MTREEACDMLWSLYLISGAPMYEAPDYDSVQPWPYKDERNNDIAAKSRVISALSIMDTKQMSHNLGIHEQRLKHLHAAYA AAIIKRLKSLHLPDFGKKETALKDEIIRSHPANPDGNVIGTHPSDYSNLLRIGNLNYFSMRNSMYHSYVSKIMEKRFIPM LVKYFPDQAGEVVKYIRKAGYGDGEVLDLIDRTAGYNSKTAYLYQGKSGEEHRKKLQRKQSGE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34595; Mature: 34595
Theoretical pI: Translated: 9.61; Mature: 9.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMKYFIYAIAAIHLGCSTSLGEETGFDRQLPAPDSIHIRGQMGEKSKKLKEFFKSGNFKQ CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCEE FYGYSNTVLSELNAMRRHGTMTREEACDMLWSLYLISGAPMYEAPDYDSVQPWPYKDERN ECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC NDIAAKSRVISALSIMDTKQMSHNLGIHEQRLKHLHAAYAAAIIKRLKSLHLPDFGKKET CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH ALKDEIIRSHPANPDGNVIGTHPSDYSNLLRIGNLNYFSMRNSMYHSYVSKIMEKRFIPM HHHHHHHHHCCCCCCCCEECCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH LVKYFPDQAGEVVKYIRKAGYGDGEVLDLIDRTAGYNSKTAYLYQGKSGEEHRKKLQRKQ HHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHH SGE CCC >Mature Secondary Structure MMKYFIYAIAAIHLGCSTSLGEETGFDRQLPAPDSIHIRGQMGEKSKKLKEFFKSGNFKQ CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCEE FYGYSNTVLSELNAMRRHGTMTREEACDMLWSLYLISGAPMYEAPDYDSVQPWPYKDERN ECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC NDIAAKSRVISALSIMDTKQMSHNLGIHEQRLKHLHAAYAAAIIKRLKSLHLPDFGKKET CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH ALKDEIIRSHPANPDGNVIGTHPSDYSNLLRIGNLNYFSMRNSMYHSYVSKIMEKRFIPM HHHHHHHHHCCCCCCCCEECCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH LVKYFPDQAGEVVKYIRKAGYGDGEVLDLIDRTAGYNSKTAYLYQGKSGEEHRKKLQRKQ HHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHH SGE CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA