Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is ispA [C]
Identifier: 187735758
GI number: 187735758
Start: 1524683
End: 1525576
Strand: Reverse
Name: ispA [C]
Synonym: Amuc_1264
Alternate gene names: 187735758
Gene position: 1525576-1524683 (Counterclockwise)
Preceding gene: 187735759
Following gene: 187735757
Centisome position: 57.26
GC content: 60.18
Gene sequence:
>894_bases ATGTGTGAACAATCACTGAACGACTACATCACAGAACAATGCGCCCTGATTGACGCAGCGCTGGACAGACTGCTGCCAGC AGAGGACGAAAGCCCCGAAACCATCCACAAAGCCATGCGCTACAGCATATTTGCGGGTGGGAAAAGAATGCGCCCCGTCC TTTGCCTGGCGGCGGCGGAGGCCTGCGGAGGACTGGCAGTGGACGCCCTGGTTCCCGCCTGCGCCGTGGAAATGATGCAT ACGTATTCCCTCATCCATGACGACCTGCCAGCCATGGACAACGACGATCTGCGCCGTGGGAAACCCACCAGCCACAAGGC TTTCGGAGAAGGCGTCGCCATCCTGGCGGGAGACGCGCTGCTGACGGAGGCTTTTGCCGTAATCGCCCAGGTGGACGATA CGGAACGCTATACCGTCAGGGATTACGTGAGGGAGCTGGCAGCCACCGGCGGCAGCACCATGCTCATCGGAGGCCAGATT CTGGATTTGGAGGGAGAACACAAGCAGCTCTCCGAACCGGAAGTCCGCACCGTGTACGAAGGGAAGACGGCCGCCCTGCT AACCACGGCCCTTCGCTTCGGCGGCATGTCCGCAAACGCCACAGAGTCCCAGCTGGAAGCTCTGACGGACTTCGGTTACA ACCTGGGGCTGGCTTTCCAGGTGATTGACGACATTCTGGACCTGACGGCTTCCACGGAAAAACTCGGCAAGACCGCCGGC AAGGACGTCAATTCCCAGAAATCCACCTGTCCGGCCCTGATTGGCCTGGACGGCGCCCGTTCCGAAGCCAAATGCCGCAC TCAGGCGGCTCTGGATGCCCTGATGATCTTCCCGGAAGAACGCCGCGCCCGCCTGGTGGAACTGGCCAACTATCTTCTTA ACCGCGAATATTAA
Upstream 100 bases:
>100_bases AGGTCCGAAAAGGGGCCGCACTCAACGCCGTACAAATCGCGGAATTGCTGGTCAACCGCTGACCTGTTTCCTCCACACCC CGCACCTATTCCATAACGCC
Downstream 100 bases:
>100_bases GCCGCTTTTTCTTTCATGCCCGCAGAAACCGTATCCGACAACGTGGAAACCCTGATCAATCTGGCGCTGGCCGAAGACTT CGGCTCCGGCGACGTGACTT
Product: Polyprenyl synthetase
Products: NA
Alternate protein names: FPP synthase; (2E,6E)-farnesyl diphosphate synthase; Geranyltranstransferase [H]
Number of amino acids: Translated: 297; Mature: 297
Protein sequence:
>297_residues MCEQSLNDYITEQCALIDAALDRLLPAEDESPETIHKAMRYSIFAGGKRMRPVLCLAAAEACGGLAVDALVPACAVEMMH TYSLIHDDLPAMDNDDLRRGKPTSHKAFGEGVAILAGDALLTEAFAVIAQVDDTERYTVRDYVRELAATGGSTMLIGGQI LDLEGEHKQLSEPEVRTVYEGKTAALLTTALRFGGMSANATESQLEALTDFGYNLGLAFQVIDDILDLTASTEKLGKTAG KDVNSQKSTCPALIGLDGARSEAKCRTQAALDALMIFPEERRARLVELANYLLNREY
Sequences:
>Translated_297_residues MCEQSLNDYITEQCALIDAALDRLLPAEDESPETIHKAMRYSIFAGGKRMRPVLCLAAAEACGGLAVDALVPACAVEMMH TYSLIHDDLPAMDNDDLRRGKPTSHKAFGEGVAILAGDALLTEAFAVIAQVDDTERYTVRDYVRELAATGGSTMLIGGQI LDLEGEHKQLSEPEVRTVYEGKTAALLTTALRFGGMSANATESQLEALTDFGYNLGLAFQVIDDILDLTASTEKLGKTAG KDVNSQKSTCPALIGLDGARSEAKCRTQAALDALMIFPEERRARLVELANYLLNREY >Mature_297_residues MCEQSLNDYITEQCALIDAALDRLLPAEDESPETIHKAMRYSIFAGGKRMRPVLCLAAAEACGGLAVDALVPACAVEMMH TYSLIHDDLPAMDNDDLRRGKPTSHKAFGEGVAILAGDALLTEAFAVIAQVDDTERYTVRDYVRELAATGGSTMLIGGQI LDLEGEHKQLSEPEVRTVYEGKTAALLTTALRFGGMSANATESQLEALTDFGYNLGLAFQVIDDILDLTASTEKLGKTAG KDVNSQKSTCPALIGLDGARSEAKCRTQAALDALMIFPEERRARLVELANYLLNREY
Specific function: Unknown
COG id: COG0142
COG function: function code H; Geranylgeranyl pyrophosphate synthase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the FPP/GGPP synthase family [H]
Homologues:
Organism=Homo sapiens, GI50659086, Length=229, Percent_Identity=32.3144104803493, Blast_Score=95, Evalue=9e-20, Organism=Escherichia coli, GI1786623, Length=288, Percent_Identity=40.9722222222222, Blast_Score=162, Evalue=3e-41, Organism=Escherichia coli, GI1789578, Length=253, Percent_Identity=32.8063241106719, Blast_Score=126, Evalue=1e-30, Organism=Caenorhabditis elegans, GI17505681, Length=245, Percent_Identity=24.8979591836735, Blast_Score=81, Evalue=7e-16, Organism=Drosophila melanogaster, GI24651612, Length=226, Percent_Identity=30.0884955752212, Blast_Score=96, Evalue=3e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000092 - InterPro: IPR017446 - InterPro: IPR008949 [H]
Pfam domain/function: PF00348 polyprenyl_synt [H]
EC number: =2.5.1.10 [H]
Molecular weight: Translated: 32110; Mature: 32110
Theoretical pI: Translated: 4.42; Mature: 4.42
Prosite motif: PS00723 POLYPRENYL_SYNTHET_1 ; PS00444 POLYPRENYL_SYNTHET_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCEQSLNDYITEQCALIDAALDRLLPAEDESPETIHKAMRYSIFAGGKRMRPVLCLAAAE CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH ACGGLAVDALVPACAVEMMHTYSLIHDDLPAMDNDDLRRGKPTSHKAFGEGVAILAGDAL HCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCEEEEECHHH LTEAFAVIAQVDDTERYTVRDYVRELAATGGSTMLIGGQILDLEGEHKQLSEPEVRTVYE HHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEECCEEEECCCCHHHCCCCCHHHHHC GKTAALLTTALRFGGMSANATESQLEALTDFGYNLGLAFQVIDDILDLTASTEKLGKTAG CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC KDVNSQKSTCPALIGLDGARSEAKCRTQAALDALMIFPEERRARLVELANYLLNREY CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MCEQSLNDYITEQCALIDAALDRLLPAEDESPETIHKAMRYSIFAGGKRMRPVLCLAAAE CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH ACGGLAVDALVPACAVEMMHTYSLIHDDLPAMDNDDLRRGKPTSHKAFGEGVAILAGDAL HCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCEEEEECHHH LTEAFAVIAQVDDTERYTVRDYVRELAATGGSTMLIGGQILDLEGEHKQLSEPEVRTVYE HHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEECCEEEECCCCHHHCCCCCHHHHHC GKTAALLTTALRFGGMSANATESQLEALTDFGYNLGLAFQVIDDILDLTASTEKLGKTAG CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC KDVNSQKSTCPALIGLDGARSEAKCRTQAALDALMIFPEERRARLVELANYLLNREY CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8486607; 7918490 [H]