Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is asd [H]
Identifier: 187735759
GI number: 187735759
Start: 1525615
End: 1526625
Strand: Reverse
Name: asd [H]
Synonym: Amuc_1265
Alternate gene names: 187735759
Gene position: 1526625-1525615 (Counterclockwise)
Preceding gene: 187735760
Following gene: 187735758
Centisome position: 57.3
GC content: 57.17
Gene sequence:
>1011_bases ATGAACCAAGCACCCCATGTTGCCATCGTCGGCGCCACCGGAGCGGTGGGCGTTGAAATCCTGTCCTGCCTGGAAACACG CAATTTTCCCGTAGGTTCCCTGAAGCTTCTGGCCTCCGCCCGGTCCGCCGGAAAACAGGTCGCTTTCCGTGGGAAAATGC TGACTGTAGAAGAATTGACGGAAAAATCCTTTGATGGGGTGGATATCGCCCTGTTCAGCGCAGGCGGAGGAATTTCCCTG AAATTCGCTCCTATCGCAGCGGCTGCGGGCTGTGTGGTCATTGACAATTCCTCTGCCTTCCGGCAGGAGCCGGACGTGCC CCTGGTGGTGCCGGAAATCAATCCGGAAGCGGCCTTCAACCACCCCCGCAATATTATCGCCAACCCGAACTGCACCACCA TCATTACGCTGATGGCCCTCTTCCCTCTGCATCAGCGTTTCGGGTTGAAAACCGTCATCGCCTCCAGTTATCAGGCGGTT TCCGGCAGCGGCCAGCACGGCATTGCGGAACTGGAAACCCAGGTGCGCGCCGTAGTGGACGGCCACCCCGTAGTGAAAAA TGTTTATCCCCACCAGATAGCCTTCAATCTTCTTCCCCAGATCGATTCCTTTACGGAAAACGGCTATACCAAGGAAGAGC TTAAGATGCTTAATGAAGGCCGTAAAATTCTTTCCCTGCCCGAACTCAAGGTAACATGCACCTGCGTGCGCGTGCCCGTT TACCGTTCCCATTCCATCTCCGTTACCGCCCAGTTTGAAAAACCTGTGGACTTGGAAACTGCCCGCAGCGCCTATGAAGG CAAACCCGGAGTCGCCCTGATGGACAACCCAGCGGAGGGCGTGTGGCCCACCCCGCTGGACAGCACCAACGGAGATACCT GCTACGTAGGGCGCATGCGCATGGACATGGCGATTGACAATGCCCTGACTCTCTGGGTCGTGGGCGATCAGGTCCGAAAA GGGGCCGCACTCAACGCCGTACAAATCGCGGAATTGCTGGTCAACCGCTGA
Upstream 100 bases:
>100_bases TCATTTTTAAGCCTGAAGGCTTGCAATCGTATTGCCATATGACCGGGCTGCCGTATAATGGGGGCGAACGGAAAATATCC GTCATTTTCTGACAACAATC
Downstream 100 bases:
>100_bases CCTGTTTCCTCCACACCCCGCACCTATTCCATAACGCCATGTGTGAACAATCACTGAACGACTACATCACAGAACAATGC GCCCTGATTGACGCAGCGCT
Product: aspartate-semialdehyde dehydrogenase
Products: NA
Alternate protein names: ASA dehydrogenase; ASADH [H]
Number of amino acids: Translated: 336; Mature: 336
Protein sequence:
>336_residues MNQAPHVAIVGATGAVGVEILSCLETRNFPVGSLKLLASARSAGKQVAFRGKMLTVEELTEKSFDGVDIALFSAGGGISL KFAPIAAAAGCVVIDNSSAFRQEPDVPLVVPEINPEAAFNHPRNIIANPNCTTIITLMALFPLHQRFGLKTVIASSYQAV SGSGQHGIAELETQVRAVVDGHPVVKNVYPHQIAFNLLPQIDSFTENGYTKEELKMLNEGRKILSLPELKVTCTCVRVPV YRSHSISVTAQFEKPVDLETARSAYEGKPGVALMDNPAEGVWPTPLDSTNGDTCYVGRMRMDMAIDNALTLWVVGDQVRK GAALNAVQIAELLVNR
Sequences:
>Translated_336_residues MNQAPHVAIVGATGAVGVEILSCLETRNFPVGSLKLLASARSAGKQVAFRGKMLTVEELTEKSFDGVDIALFSAGGGISL KFAPIAAAAGCVVIDNSSAFRQEPDVPLVVPEINPEAAFNHPRNIIANPNCTTIITLMALFPLHQRFGLKTVIASSYQAV SGSGQHGIAELETQVRAVVDGHPVVKNVYPHQIAFNLLPQIDSFTENGYTKEELKMLNEGRKILSLPELKVTCTCVRVPV YRSHSISVTAQFEKPVDLETARSAYEGKPGVALMDNPAEGVWPTPLDSTNGDTCYVGRMRMDMAIDNALTLWVVGDQVRK GAALNAVQIAELLVNR >Mature_336_residues MNQAPHVAIVGATGAVGVEILSCLETRNFPVGSLKLLASARSAGKQVAFRGKMLTVEELTEKSFDGVDIALFSAGGGISL KFAPIAAAAGCVVIDNSSAFRQEPDVPLVVPEINPEAAFNHPRNIIANPNCTTIITLMALFPLHQRFGLKTVIASSYQAV SGSGQHGIAELETQVRAVVDGHPVVKNVYPHQIAFNLLPQIDSFTENGYTKEELKMLNEGRKILSLPELKVTCTCVRVPV YRSHSISVTAQFEKPVDLETARSAYEGKPGVALMDNPAEGVWPTPLDSTNGDTCYVGRMRMDMAIDNALTLWVVGDQVRK GAALNAVQIAELLVNR
Specific function: Unknown
COG id: COG0136
COG function: function code E; Aspartate-semialdehyde dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aspartate-semialdehyde dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1788658, Length=340, Percent_Identity=36.1764705882353, Blast_Score=193, Evalue=1e-50, Organism=Escherichia coli, GI1789841, Length=355, Percent_Identity=26.1971830985915, Blast_Score=80, Evalue=2e-16, Organism=Saccharomyces cerevisiae, GI6320362, Length=384, Percent_Identity=28.90625, Blast_Score=86, Evalue=9e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000319 - InterPro: IPR012080 - InterPro: IPR005986 - InterPro: IPR016040 - InterPro: IPR000534 - InterPro: IPR012280 [H]
Pfam domain/function: PF01118 Semialdhyde_dh; PF02774 Semialdhyde_dhC [H]
EC number: =1.2.1.11 [H]
Molecular weight: Translated: 36062; Mature: 36062
Theoretical pI: Translated: 6.40; Mature: 6.40
Prosite motif: PS00879 ODR_DC_2_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQAPHVAIVGATGAVGVEILSCLETRNFPVGSLKLLASARSAGKQVAFRGKMLTVEELT CCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEECCCEEEHHHHH EKSFDGVDIALFSAGGGISLKFAPIAAAAGCVVIDNSSAFRQEPDVPLVVPEINPEAAFN HCCCCCCEEEEEECCCCCEEEEECHHHHCCEEEEECCHHHCCCCCCCEEEECCCCCCCCC HPRNIIANPNCTTIITLMALFPLHQRFGLKTVIASSYQAVSGSGQHGIAELETQVRAVVD CCCCEECCCCHHHHHHHHHHHHHHHHCCHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHCC GHPVVKNVYPHQIAFNLLPQIDSFTENGYTKEELKMLNEGRKILSLPELKVTCTCVRVPV CCCHHHCCCCHHHHHHHHHCHHHHHCCCCCHHHHHHHHCCCCEEECCCCEEEEEEEEEEE YRSHSISVTAQFEKPVDLETARSAYEGKPGVALMDNPAEGVWPTPLDSTNGDTCYVGRMR EECCEEEEEEECCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEEE MDMAIDNALTLWVVGDQVRKGAALNAVQIAELLVNR EEEEECCEEEEEEECCHHHCCCCCHHHHHHHHHHCC >Mature Secondary Structure MNQAPHVAIVGATGAVGVEILSCLETRNFPVGSLKLLASARSAGKQVAFRGKMLTVEELT CCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEECCCEEEHHHHH EKSFDGVDIALFSAGGGISLKFAPIAAAAGCVVIDNSSAFRQEPDVPLVVPEINPEAAFN HCCCCCCEEEEEECCCCCEEEEECHHHHCCEEEEECCHHHCCCCCCCEEEECCCCCCCCC HPRNIIANPNCTTIITLMALFPLHQRFGLKTVIASSYQAVSGSGQHGIAELETQVRAVVD CCCCEECCCCHHHHHHHHHHHHHHHHCCHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHCC GHPVVKNVYPHQIAFNLLPQIDSFTENGYTKEELKMLNEGRKILSLPELKVTCTCVRVPV CCCHHHCCCCHHHHHHHHHCHHHHHCCCCCHHHHHHHHCCCCEEECCCCEEEEEEEEEEE YRSHSISVTAQFEKPVDLETARSAYEGKPGVALMDNPAEGVWPTPLDSTNGDTCYVGRMR EECCEEEEEEECCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEEE MDMAIDNALTLWVVGDQVRKGAALNAVQIAELLVNR EEEEECCEEEEEEECCHHHCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9537320 [H]