Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735716
Identifier: 187735716
GI number: 187735716
Start: 1468707
End: 1470575
Strand: Reverse
Name: 187735716
Synonym: Amuc_1222
Alternate gene names: NA
Gene position: 1470575-1468707 (Counterclockwise)
Preceding gene: 187735720
Following gene: 187735715
Centisome position: 55.2
GC content: 53.88
Gene sequence:
>1869_bases ATGGCATCTACGTCCCCCCAATCTTCCAGCCCTCTCCCCTCCTGCTTGGAAAAACCGCTGCCTCTGGATGGATTCCAAGG TACTCCGGATGAAGTAGAACAGCAATGGTACGATCAAGTTTATCTGGGTTCCGGAGACAGAATGAAGCAGCTTACCTGGA GAGCCGTCATCGTAGGCATGCTTCTAGGCTCCATCCTTTCCCTCACTAATCTGTACGCCAACCTCAAAATGGGATGGTCC TTTGGGGTGGCTCTGACGGCAGGAATTATCTCTTTTGCCCTCTGGAACGCCTTTGTGCGCCTGGGCATTTCCAAATCCCC CATGACTATTCTGGAAAATACATGCATGCAGTCCGCTGCCAGTTCTGCAGGCTATTCTACAGGGGGAACCCTCACCTCTG CCGTAGCCGCCCTGCTCCTGCTGACAGGACAGCACATGCCTCTTGGCACTACCTTCGCCTGGATATTTTTCATTGCCGTA CTGGGTGTCACCATGGCCATTCCGATGAAACGCCAGATGATCAACATTGAACAAATAAGGTTCCCAGACAGTATTGCTAC GGCGGAAACCCTCAAAGTTCTCTATTCTGAAGGCAAAAAGGCGGCGGGACAGGCCAAAGCCCTTCTTTATTCTGCCCTTT TCGCCGCCGCTAATGCCATCGCCATGGCTGCAGGAGGAGAACGATGGCTTGGAACGGTCCAGCAACATATCCTCGGCAAC TGGTACCAGCGTACTATCTTCTTCAAATGGGATCTCATGTTCGTGGGTGCGGGAGCTCTGGTAGGCATGAAAACATCCCT CAGCCTCTTCATCGGAGGAACCGTTTGCTGGGCTCTTTACGTTCCGTGGCTGGAAAGCCAGAAATTGCTTCCCGCGGGAG CAGGTTATCGGGAGAGCGTAAGCTGGACCCTGTGGGGAGGAACCGCCTGCATGGTCGTCGCCAGCATTGTGGCTTTCCTA TTCCAATGGAAAAGCATTGTTCGTTCCTTTTCTTCCCTGGGTGCCATGTTTTCCCTGAGTAAAAAACGAAAACTGACAGA TGTGGAAAAAATAGAAACGCCCATGAGCTGGTTTCTAACAGGCCAGCTTATCTCTCTGGGAGCTCTCGGCTATCTGGCTC ATACATCATTTAACGTTCCGTACTGGATGAGCTGCATCGCGGTAGTCATATCCTTTTTCCTGGCGCTGGTCGTCTGCCGA ATCACCGGAGAAGCCAATATTACACCCACCGGAGCCATGGGAAAAGTTACACAGCTCATCTTCGGAGGGATTGCACCCGG GCACGTAACAGCCAACCTGATGGCGGCCAATATCACTTCAGGAGCGTCCAGTTCCTCGGCAGACCTGCTCGTAGACCTCA AAGTAGGCTACCTGCTGGGAGCTAACCCCCGCAAACAATTCATCGCCCAGTTTTCCGGAATTTTTCTGGGAACCCTCGTC TCCGTGCTGGCCTTCCGCTCCATGGTTCCGGATGCGAACGCTCTCCAGGCTTTCAATGCTCCGGGAGCCAGAACATGGGC GGCCACAGCGGAAGCACTGGGCATGGGGTTCAGCCATTTGCACAGCATCAAGGTGCTTTCCATCATTGCAGGCGGTATTC TCGGACTCATTCTGGTGCTTATTCCCCGCTATATTCCCCGGACAGGAAAATGGCTCCCCACCCCCATCGGCTTCGGCCTG GCCTGGGCCATCCAGTGGAACGACTCCTTCCTTTTCTTTACAGGAGCTGTGCTCGGCTGGGCTGCGGACCATCTTTTCAA GGCCAAATCACGAGAATATAAAGTCCCCACCGCCTCCGGCATCATTGCAGGCGCAGCCCTCACGGGAATGGCCATTCTGA TGTTCAGCATTTACCAGGCAGCCCTCTGA
Upstream 100 bases:
>100_bases CGTCACAAGCACGCAAGTCTCAAGCAGAAGGAACGCCGAAAGCAGAGAAAAACAGATACGACTTTTCCACCACTCCCGCA AATGCTATATTATGAACTGT
Downstream 100 bases:
>100_bases ACGAAAAGGCTATATTCAAAAAAAAATCCATCTCTACAAAAGATCCTGTACAGCTCATCTTTTGGAACCGGAGCATAAAT CGGGGCAGTACAATAAGAAT
Product: oligopeptide transporter, OPT superfamily
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 622; Mature: 621
Protein sequence:
>622_residues MASTSPQSSSPLPSCLEKPLPLDGFQGTPDEVEQQWYDQVYLGSGDRMKQLTWRAVIVGMLLGSILSLTNLYANLKMGWS FGVALTAGIISFALWNAFVRLGISKSPMTILENTCMQSAASSAGYSTGGTLTSAVAALLLLTGQHMPLGTTFAWIFFIAV LGVTMAIPMKRQMINIEQIRFPDSIATAETLKVLYSEGKKAAGQAKALLYSALFAAANAIAMAAGGERWLGTVQQHILGN WYQRTIFFKWDLMFVGAGALVGMKTSLSLFIGGTVCWALYVPWLESQKLLPAGAGYRESVSWTLWGGTACMVVASIVAFL FQWKSIVRSFSSLGAMFSLSKKRKLTDVEKIETPMSWFLTGQLISLGALGYLAHTSFNVPYWMSCIAVVISFFLALVVCR ITGEANITPTGAMGKVTQLIFGGIAPGHVTANLMAANITSGASSSSADLLVDLKVGYLLGANPRKQFIAQFSGIFLGTLV SVLAFRSMVPDANALQAFNAPGARTWAATAEALGMGFSHLHSIKVLSIIAGGILGLILVLIPRYIPRTGKWLPTPIGFGL AWAIQWNDSFLFFTGAVLGWAADHLFKAKSREYKVPTASGIIAGAALTGMAILMFSIYQAAL
Sequences:
>Translated_622_residues MASTSPQSSSPLPSCLEKPLPLDGFQGTPDEVEQQWYDQVYLGSGDRMKQLTWRAVIVGMLLGSILSLTNLYANLKMGWS FGVALTAGIISFALWNAFVRLGISKSPMTILENTCMQSAASSAGYSTGGTLTSAVAALLLLTGQHMPLGTTFAWIFFIAV LGVTMAIPMKRQMINIEQIRFPDSIATAETLKVLYSEGKKAAGQAKALLYSALFAAANAIAMAAGGERWLGTVQQHILGN WYQRTIFFKWDLMFVGAGALVGMKTSLSLFIGGTVCWALYVPWLESQKLLPAGAGYRESVSWTLWGGTACMVVASIVAFL FQWKSIVRSFSSLGAMFSLSKKRKLTDVEKIETPMSWFLTGQLISLGALGYLAHTSFNVPYWMSCIAVVISFFLALVVCR ITGEANITPTGAMGKVTQLIFGGIAPGHVTANLMAANITSGASSSSADLLVDLKVGYLLGANPRKQFIAQFSGIFLGTLV SVLAFRSMVPDANALQAFNAPGARTWAATAEALGMGFSHLHSIKVLSIIAGGILGLILVLIPRYIPRTGKWLPTPIGFGL AWAIQWNDSFLFFTGAVLGWAADHLFKAKSREYKVPTASGIIAGAALTGMAILMFSIYQAAL >Mature_621_residues ASTSPQSSSPLPSCLEKPLPLDGFQGTPDEVEQQWYDQVYLGSGDRMKQLTWRAVIVGMLLGSILSLTNLYANLKMGWSF GVALTAGIISFALWNAFVRLGISKSPMTILENTCMQSAASSAGYSTGGTLTSAVAALLLLTGQHMPLGTTFAWIFFIAVL GVTMAIPMKRQMINIEQIRFPDSIATAETLKVLYSEGKKAAGQAKALLYSALFAAANAIAMAAGGERWLGTVQQHILGNW YQRTIFFKWDLMFVGAGALVGMKTSLSLFIGGTVCWALYVPWLESQKLLPAGAGYRESVSWTLWGGTACMVVASIVAFLF QWKSIVRSFSSLGAMFSLSKKRKLTDVEKIETPMSWFLTGQLISLGALGYLAHTSFNVPYWMSCIAVVISFFLALVVCRI TGEANITPTGAMGKVTQLIFGGIAPGHVTANLMAANITSGASSSSADLLVDLKVGYLLGANPRKQFIAQFSGIFLGTLVS VLAFRSMVPDANALQAFNAPGARTWAATAEALGMGFSHLHSIKVLSIIAGGILGLILVLIPRYIPRTGKWLPTPIGFGLA WAIQWNDSFLFFTGAVLGWAADHLFKAKSREYKVPTASGIIAGAALTGMAILMFSIYQAAL
Specific function: Unknown
COG id: COG1297
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the oligopeptide OPT transporter family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6321324, Length=569, Percent_Identity=22.1441124780316, Blast_Score=118, Evalue=3e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004814 - InterPro: IPR004813 [H]
Pfam domain/function: PF03169 OPT [H]
EC number: NA
Molecular weight: Translated: 66647; Mature: 66516
Theoretical pI: Translated: 9.87; Mature: 9.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASTSPQSSSPLPSCLEKPLPLDGFQGTPDEVEQQWYDQVYLGSGDRMKQLTWRAVIVGM CCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHH LLGSILSLTNLYANLKMGWSFGVALTAGIISFALWNAFVRLGISKSPMTILENTCMQSAA HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH SSAGYSTGGTLTSAVAALLLLTGQHMPLGTTFAWIFFIAVLGVTMAIPMKRQMINIEQIR HCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHEE FPDSIATAETLKVLYSEGKKAAGQAKALLYSALFAAANAIAMAAGGERWLGTVQQHILGN CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH WYQRTIFFKWDLMFVGAGALVGMKTSLSLFIGGTVCWALYVPWLESQKLLPAGAGYRESV HHHEEEEEEEEEHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC SWTLWGGTACMVVASIVAFLFQWKSIVRSFSSLGAMFSLSKKRKLTDVEKIETPMSWFLT CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHH GQLISLGALGYLAHTSFNVPYWMSCIAVVISFFLALVVCRITGEANITPTGAMGKVTQLI HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH FGGIAPGHVTANLMAANITSGASSSSADLLVDLKVGYLLGANPRKQFIAQFSGIFLGTLV HCCCCCCHHHHHHHEEECCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHH SVLAFRSMVPDANALQAFNAPGARTWAATAEALGMGFSHLHSIKVLSIIAGGILGLILVL HHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH IPRYIPRTGKWLPTPIGFGLAWAIQWNDSFLFFTGAVLGWAADHLFKAKSREYKVPTASG HHHHCCCCCCCCCCCCCCCEEEEEEECCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCHHH IIAGAALTGMAILMFSIYQAAL HHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure ASTSPQSSSPLPSCLEKPLPLDGFQGTPDEVEQQWYDQVYLGSGDRMKQLTWRAVIVGM CCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHH LLGSILSLTNLYANLKMGWSFGVALTAGIISFALWNAFVRLGISKSPMTILENTCMQSAA HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH SSAGYSTGGTLTSAVAALLLLTGQHMPLGTTFAWIFFIAVLGVTMAIPMKRQMINIEQIR HCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHEE FPDSIATAETLKVLYSEGKKAAGQAKALLYSALFAAANAIAMAAGGERWLGTVQQHILGN CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH WYQRTIFFKWDLMFVGAGALVGMKTSLSLFIGGTVCWALYVPWLESQKLLPAGAGYRESV HHHEEEEEEEEEHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC SWTLWGGTACMVVASIVAFLFQWKSIVRSFSSLGAMFSLSKKRKLTDVEKIETPMSWFLT CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHH GQLISLGALGYLAHTSFNVPYWMSCIAVVISFFLALVVCRITGEANITPTGAMGKVTQLI HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH FGGIAPGHVTANLMAANITSGASSSSADLLVDLKVGYLLGANPRKQFIAQFSGIFLGTLV HCCCCCCHHHHHHHEEECCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHH SVLAFRSMVPDANALQAFNAPGARTWAATAEALGMGFSHLHSIKVLSIIAGGILGLILVL HHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH IPRYIPRTGKWLPTPIGFGLAWAIQWNDSFLFFTGAVLGWAADHLFKAKSREYKVPTASG HHHHCCCCCCCCCCCCCCCEEEEEEECCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCHHH IIAGAALTGMAILMFSIYQAAL HHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]