Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is 187735614
Identifier: 187735614
GI number: 187735614
Start: 1338657
End: 1339814
Strand: Reverse
Name: 187735614
Synonym: Amuc_1119
Alternate gene names: NA
Gene position: 1339814-1338657 (Counterclockwise)
Preceding gene: 187735616
Following gene: 187735611
Centisome position: 50.29
GC content: 53.28
Gene sequence:
>1158_bases ATGTTGAAACGACTTCTCTCCGCATTTTTTTCTCTGTTCTTTCTGGGAGCGGCCTCCGGGACATCCTTTGCGGAAGTCAC CGTTCCGGACGCCCTGAAAGACCGGATTGCTCTGAAAAAAACGGCCCGTCAGCTCAATATCGTTTATTTTCTGGGCAGTG ATACGGAACCCGTTCCGGATTATGAACGGCGCCTCAGCGAACTGCTCCTTTACCTCCAGCAGTTTTACGGCAAGGAAATG CAGCGGCATGGCTATGGCGCGCGTTCCTTCGGCCTGGACATCAAATCCCCAGGCCGCGTGAACATCATTGAATACAAGGC CAAAAATCCGGCGGCCCATTATCCTTATGAAAACGGAGGCGGCTGGAAAGCGGCCCAGGAACTTGACGAATTTTTCAAAG CCCATCCGGACAGGAAAAAAAGCCAGCACACGCTCATCATCATGCCCACCTGGAATGACGAAAAGAACGGCCCCGACAAT CCCGGCGGAGTTCCCTTTTACGGCATGGGGCGCAACTGTTTCGCCCTGGATTATCCGGCCTTCGATATCAAACACCTGGG GCAGAAAACAAGGGAAGGAAGGCTGCTGACCAAATGGTACGGAGGCATGGCCCACGAATTGGGGCACGGCCTTAATCTGC CGCACAACCACCAAACCGCCTCGGACGGTAAAAAATACGGCACGGCCCTGATGGGTTCGGGCAATTACACGTTCGGGACC AGTCCCACGTTCCTGACCCCGGCCAGCTGCGCCCTGCTGGATGCCTGTGAAGTGTTTTCCGTCACCCCGTCCCAGCAATT CTACGAAGGCAAGCCGGAAGTGGAGGTCGGGGACGTAGCCATTTCTTTTAAAGGAGACCAGATTCTGGTTTCCGGCAATT ATAAAAGCCCCCAGACCGTCAAAGCTCTGAATGTTTACATCCAGGATCCTCCTTATGCGGTCAACCAGGACTATGACGCC GTTTCCTTCTCCCGGCGCCTTGGAAAAAAGAGCGGGAAATTCTCCATGAAAATTGACAAAAAAGAGCTGGAAGGATTGAA CAATAACGAATTCCGCATTTCCCTCATGTTCATTCTCGCCAACGGGCTGCACATGCAGAAGCATTTCACGTTCCATTGGG ACGCTCTCCAGGATTACAGGGACGGAAGCAAATCCTGA
Upstream 100 bases:
>100_bases CCCCCATTATTTCCCTCCCGGCCCAGGGACGCTTCCTCCAATGGCGGCGAGAACAGTAAATTTCCTTGTCTTTAAAAATG ACGCTCCTACTTTGGCATGT
Downstream 100 bases:
>100_bases ACGCATTTTCCATGCGCGGGCGGAGGCCGCCACAATCACGGCCTCCGCACCTTGCGGAGCCTTATTCTTTCAAACTGGTG CGCCAGCCGGAAGCGTGCTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 385; Mature: 385
Protein sequence:
>385_residues MLKRLLSAFFSLFFLGAASGTSFAEVTVPDALKDRIALKKTARQLNIVYFLGSDTEPVPDYERRLSELLLYLQQFYGKEM QRHGYGARSFGLDIKSPGRVNIIEYKAKNPAAHYPYENGGGWKAAQELDEFFKAHPDRKKSQHTLIIMPTWNDEKNGPDN PGGVPFYGMGRNCFALDYPAFDIKHLGQKTREGRLLTKWYGGMAHELGHGLNLPHNHQTASDGKKYGTALMGSGNYTFGT SPTFLTPASCALLDACEVFSVTPSQQFYEGKPEVEVGDVAISFKGDQILVSGNYKSPQTVKALNVYIQDPPYAVNQDYDA VSFSRRLGKKSGKFSMKIDKKELEGLNNNEFRISLMFILANGLHMQKHFTFHWDALQDYRDGSKS
Sequences:
>Translated_385_residues MLKRLLSAFFSLFFLGAASGTSFAEVTVPDALKDRIALKKTARQLNIVYFLGSDTEPVPDYERRLSELLLYLQQFYGKEM QRHGYGARSFGLDIKSPGRVNIIEYKAKNPAAHYPYENGGGWKAAQELDEFFKAHPDRKKSQHTLIIMPTWNDEKNGPDN PGGVPFYGMGRNCFALDYPAFDIKHLGQKTREGRLLTKWYGGMAHELGHGLNLPHNHQTASDGKKYGTALMGSGNYTFGT SPTFLTPASCALLDACEVFSVTPSQQFYEGKPEVEVGDVAISFKGDQILVSGNYKSPQTVKALNVYIQDPPYAVNQDYDA VSFSRRLGKKSGKFSMKIDKKELEGLNNNEFRISLMFILANGLHMQKHFTFHWDALQDYRDGSKS >Mature_385_residues MLKRLLSAFFSLFFLGAASGTSFAEVTVPDALKDRIALKKTARQLNIVYFLGSDTEPVPDYERRLSELLLYLQQFYGKEM QRHGYGARSFGLDIKSPGRVNIIEYKAKNPAAHYPYENGGGWKAAQELDEFFKAHPDRKKSQHTLIIMPTWNDEKNGPDN PGGVPFYGMGRNCFALDYPAFDIKHLGQKTREGRLLTKWYGGMAHELGHGLNLPHNHQTASDGKKYGTALMGSGNYTFGT SPTFLTPASCALLDACEVFSVTPSQQFYEGKPEVEVGDVAISFKGDQILVSGNYKSPQTVKALNVYIQDPPYAVNQDYDA VSFSRRLGKKSGKFSMKIDKKELEGLNNNEFRISLMFILANGLHMQKHFTFHWDALQDYRDGSKS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43204; Mature: 43204
Theoretical pI: Translated: 9.03; Mature: 9.03
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKRLLSAFFSLFFLGAASGTSFAEVTVPDALKDRIALKKTARQLNIVYFLGSDTEPVPD CHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCEEEEEEEECCCCCCCCH YERRLSELLLYLQQFYGKEMQRHGYGARSFGLDIKSPGRVNIIEYKAKNPAAHYPYENGG HHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCCC GWKAAQELDEFFKAHPDRKKSQHTLIIMPTWNDEKNGPDNPGGVPFYGMGRNCFALDYPA CCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCEEEECCCC FDIKHLGQKTREGRLLTKWYGGMAHELGHGLNLPHNHQTASDGKKYGTALMGSGNYTFGT HHHHHHHHHHHCCEEEHHHHCCHHHHHCCCCCCCCCCCCCCCCHHHCCEEECCCCEECCC SPTFLTPASCALLDACEVFSVTPSQQFYEGKPEVEVGDVAISFKGDQILVSGNYKSPQTV CCCEECCCHHHHHHHHHHEECCCCHHHHCCCCCEEECCEEEEECCCEEEEECCCCCCCEE KALNVYIQDPPYAVNQDYDAVSFSRRLGKKSGKFSMKIDKKELEGLNNNEFRISLMFILA EEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECHHHHCCCCCCCEEEEEEEEEC NGLHMQKHFTFHWDALQDYRDGSKS CCCEEEEEEEEEHHHHHHHCCCCCC >Mature Secondary Structure MLKRLLSAFFSLFFLGAASGTSFAEVTVPDALKDRIALKKTARQLNIVYFLGSDTEPVPD CHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCEEEEEEEECCCCCCCCH YERRLSELLLYLQQFYGKEMQRHGYGARSFGLDIKSPGRVNIIEYKAKNPAAHYPYENGG HHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCCC GWKAAQELDEFFKAHPDRKKSQHTLIIMPTWNDEKNGPDNPGGVPFYGMGRNCFALDYPA CCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCEEEECCCC FDIKHLGQKTREGRLLTKWYGGMAHELGHGLNLPHNHQTASDGKKYGTALMGSGNYTFGT HHHHHHHHHHHCCEEEHHHHCCHHHHHCCCCCCCCCCCCCCCCHHHCCEEECCCCEECCC SPTFLTPASCALLDACEVFSVTPSQQFYEGKPEVEVGDVAISFKGDQILVSGNYKSPQTV CCCEECCCHHHHHHHHHHEECCCCHHHHCCCCCEEECCEEEEECCCEEEEECCCCCCCEE KALNVYIQDPPYAVNQDYDAVSFSRRLGKKSGKFSMKIDKKELEGLNNNEFRISLMFILA EEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECHHHHCCCCCCCEEEEEEEEEC NGLHMQKHFTFHWDALQDYRDGSKS CCCEEEEEEEEEHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA