Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is 187735611
Identifier: 187735611
GI number: 187735611
Start: 1334351
End: 1335268
Strand: Reverse
Name: 187735611
Synonym: Amuc_1116
Alternate gene names: NA
Gene position: 1335268-1334351 (Counterclockwise)
Preceding gene: 187735614
Following gene: 187735609
Centisome position: 50.12
GC content: 58.17
Gene sequence:
>918_bases ATGAGCGCTACACCGAACAGCCTTTTCCGCCATTATCTTGATTCCCTGATCCAGCAGGGAACAACGCGAACGAGCCTGAC GGATGAAGCCAGAAACGTTCTCAGAACATGGTACGTGGCTTCCAGGCAGGGAGGCCGTCCCGCCGCATCAGCACCCGCTT CTCCGGAACCGCCGCCCCTGCAGGCAGCCGCTCCTGCCTCCGCTCCTGCCTCCGCTCCTGCCGGAAAGCCGGAACCGCCG GAGCTGTTTCCGCAAAACAGGGAACCGGCCTCTGCCATTACCCTCCCGGAAGGGACAATGGAAGACAAGCTGCAATACCT CCGTAATCTGGCGCAGAACTGGAAACCGGCGCGGGAACTCAACTCCCTGCGGGACACCATGGTCTTTGCCACGGGCAATC CCCATACGAAACTCATGCTCATCGGGGAAGCTCCCGGATATTATGAAGAAGTGCAGCAGGAGCCCTTTGTGGGCCGTGCC GGGGAAAAACTCAACCAGATATTAAGGGCCATGGGGCTCTCCAGAGACATGGTCTATATTTCCAATATCGTCAAATTCCG CCCGGCCCTCCCCAACCAGCGGACCAATAACCGTGCACCCACGCCGGAAGAAATTGAAGCATGCCTGCCCATCATCATGC ATGAAATCCGGGTCATCCAGCCGAAAATGATTGTAGCCTTGGGCGGTACCGCCGCCGTAGGCCTATTGGGGGAACAGGGA TCCGTCAGTTCCATGCGCGGCAGGTTCCACGACCTTAACGGCATTCCCGTACGCGTCACTTACCATCCCAGTTATCTGCT CAGATCGGACAGCCCGCGGGAAAAACGCAAGGTATGGGAAGACATGCTGGCCGTTATGGAACGCCTGGACATGCCCATCT CAGAAAAACAGCGCGGCTACTTCCTGCCCAGGGCATAA
Upstream 100 bases:
>100_bases CCGTGTCATTTCCCGGAGAGGAGCGTTCCATGAAGGCCGGGGAGCCTGCGAATCGTCGTGACAGACGGCCTCTTATGGAC TAATCTGGCTTTATCCTCCC
Downstream 100 bases:
>100_bases CCATGGGGACTCCCTCATGCCGCCCTTTTCCGGCTGCGGCAGTCAAACAGCCGTCCCTTCATAGAAAGTCCGTTCCTGCA ATGCCGGTTTTGTTGTTCCA
Product: phage SPO1 DNA polymerase-related protein
Products: diphosphate; DNAn+1
Alternate protein names: Uracil-DNA Glycosylase; Phage SPO1 DNA Polymerase-Like Protein; DNA Polymerase; DNA Polymerase Bacteriophage-Type; Uracil DNA Glycosylase Superfamily Protein; DNA Polymerase-Related Protein Bacteriophage-Type; DNA Glycosylase; Uracil-DNA Glycosylase Family 4 Protein; Phage Spo1 DNA Polymerase-Related Protein; DNA-Directed DNA Polymerase; DNA Polymerase-Related Protein; Bacteriophage-Related DNA Polymerase; Phage DNA Polymerase; Bacteriophage-Type DNA Polymerase N-Terminal Domain Protein; Phage SPO1 DNA Polymerase Domain-Containing Protein; Phage Related DNA Polymerase; Phage SpO1 DNA Polymerase-Related Protein; Arginine Biosynthesis Bifunctional Protein ArgJ; Bacteriophage-Type DNA Polymerase; DNA Polymerase Related Protein; DNA-Directed DNA Polymerase Bacteriophage-Type; Uracil-DNA Glycosylase Phage-Related Protein; Phage Shock Protein E; C-Terminal Part Of DNA Polymerase Bacteriophage-Type; Phage Spo1 DNA Polymerase Domain Protein; Uracil-DNA Glycosylase-Like Protein; Uracil-DNA Glycosylase-Related Protein; N-Terminus Of Phage SPO1 DNA Polymerase
Number of amino acids: Translated: 305; Mature: 304
Protein sequence:
>305_residues MSATPNSLFRHYLDSLIQQGTTRTSLTDEARNVLRTWYVASRQGGRPAASAPASPEPPPLQAAAPASAPASAPAGKPEPP ELFPQNREPASAITLPEGTMEDKLQYLRNLAQNWKPARELNSLRDTMVFATGNPHTKLMLIGEAPGYYEEVQQEPFVGRA GEKLNQILRAMGLSRDMVYISNIVKFRPALPNQRTNNRAPTPEEIEACLPIIMHEIRVIQPKMIVALGGTAAVGLLGEQG SVSSMRGRFHDLNGIPVRVTYHPSYLLRSDSPREKRKVWEDMLAVMERLDMPISEKQRGYFLPRA
Sequences:
>Translated_305_residues MSATPNSLFRHYLDSLIQQGTTRTSLTDEARNVLRTWYVASRQGGRPAASAPASPEPPPLQAAAPASAPASAPAGKPEPP ELFPQNREPASAITLPEGTMEDKLQYLRNLAQNWKPARELNSLRDTMVFATGNPHTKLMLIGEAPGYYEEVQQEPFVGRA GEKLNQILRAMGLSRDMVYISNIVKFRPALPNQRTNNRAPTPEEIEACLPIIMHEIRVIQPKMIVALGGTAAVGLLGEQG SVSSMRGRFHDLNGIPVRVTYHPSYLLRSDSPREKRKVWEDMLAVMERLDMPISEKQRGYFLPRA >Mature_304_residues SATPNSLFRHYLDSLIQQGTTRTSLTDEARNVLRTWYVASRQGGRPAASAPASPEPPPLQAAAPASAPASAPAGKPEPPE LFPQNREPASAITLPEGTMEDKLQYLRNLAQNWKPARELNSLRDTMVFATGNPHTKLMLIGEAPGYYEEVQQEPFVGRAG EKLNQILRAMGLSRDMVYISNIVKFRPALPNQRTNNRAPTPEEIEACLPIIMHEIRVIQPKMIVALGGTAAVGLLGEQGS VSSMRGRFHDLNGIPVRVTYHPSYLLRSDSPREKRKVWEDMLAVMERLDMPISEKQRGYFLPRA
Specific function: Unknown
COG id: COG1573
COG function: function code L; Uracil-DNA glycosylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 2.7.7.7
Molecular weight: Translated: 33844; Mature: 33713
Theoretical pI: Translated: 9.67; Mature: 9.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSATPNSLFRHYLDSLIQQGTTRTSLTDEARNVLRTWYVASRQGGRPAASAPASPEPPPL CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC QAAAPASAPASAPAGKPEPPELFPQNREPASAITLPEGTMEDKLQYLRNLAQNWKPAREL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCHHHHH NSLRDTMVFATGNPHTKLMLIGEAPGYYEEVQQEPFVGRAGEKLNQILRAMGLSRDMVYI HHHHHHEEEECCCCCEEEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHH SNIVKFRPALPNQRTNNRAPTPEEIEACLPIIMHEIRVIQPKMIVALGGTAAVGLLGEQG HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHEEECCCCC SVSSMRGRFHDLNGIPVRVTYHPSYLLRSDSPREKRKVWEDMLAVMERLDMPISEKQRGY CHHHHHHHHCCCCCCEEEEEECCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC FLPRA CCCCC >Mature Secondary Structure SATPNSLFRHYLDSLIQQGTTRTSLTDEARNVLRTWYVASRQGGRPAASAPASPEPPPL CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC QAAAPASAPASAPAGKPEPPELFPQNREPASAITLPEGTMEDKLQYLRNLAQNWKPAREL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCHHHHH NSLRDTMVFATGNPHTKLMLIGEAPGYYEEVQQEPFVGRAGEKLNQILRAMGLSRDMVYI HHHHHHEEEECCCCCEEEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHH SNIVKFRPALPNQRTNNRAPTPEEIEACLPIIMHEIRVIQPKMIVALGGTAAVGLLGEQG HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHEEECCCCC SVSSMRGRFHDLNGIPVRVTYHPSYLLRSDSPREKRKVWEDMLAVMERLDMPISEKQRGY CHHHHHHHHCCCCCCEEEEEECCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC FLPRA CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: deoxynucleoside triphosphate; DNAn
Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA