Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is 187735616
Identifier: 187735616
GI number: 187735616
Start: 1342645
End: 1344018
Strand: Reverse
Name: 187735616
Synonym: Amuc_1121
Alternate gene names: NA
Gene position: 1344018-1342645 (Counterclockwise)
Preceding gene: 187735617
Following gene: 187735614
Centisome position: 50.45
GC content: 59.02
Gene sequence:
>1374_bases ATGGACCTGCGCTCCATGGCCTCCCTGTATGAGGAAGCCCTTTCCGCAGCAAGGGAAGAAGGGCCGGCCGCCGTCAGGGA ACATTCCGTTTCCAATCATTCCGCCCTTCCGGACGAGCGGACTCTTCAGCTTCTTCTTCTGGAAGGAGTATTCGGAACCT CTTTTACGGATGATTCAGGCAGGGACGTTCACATTCTGGATTTCGGGAACTGGAATAAATCCGCCGGACCGGACTTTCTA AACGCCAGGATATGCATTAATGGCGTCCCGCAATCGGGAGATATCGAACTGGATCCCGCGCCGGAAGACTGGGAACGCCA CGGGCACGGTTCCAACCCGGGGTTTAACGGCGTTATCCTGCACCTCGCCTGTGCGCCCAGCCGCAGGAAATGGTTCACCC GCAATGCCAGGCATGAACGCGTTCCTCTGGCTGTCATTCCCCCCGCTACGCTGGCGCGGTCAGGAACATCCCCTTCCGGC AACGCCCCGGTACGCCACTGCCGCCACTCCGGACTGCTGGCATCCATGGCTCCGGAGTTTCTGGAAACACTCCTCCAATC AGCGGCAGCCTACAGGTTCCGGAACAAGCACCGCCGCCATGCGGAACGCGCCAAATACGCAGGAGAGGAACAGGCCCTTT TTGAAAACCTGGCGGAAACGCTGGGCTATCACGCCAACAAAACCGCCATGCGCCACCTGGCCCTGCGGGCGCCCCTGCGT TCCATCCGGAACTGTCCGGAAGCCCTGCTTTTCGGTACGGCGGGCTTCCTCCTTCCCGTTCTTCCGGCCTCCTGCACACC GGAAGCCGTAGAACTCCACAAAAAACTCTGGGCTCAATGGTGGCCCCTGCGGGCGCAATTTGAACTGGCACCGGACCGCT CCTTTCCCTGGACGTATTCCGGCAACAGGCCGGCCAACCATCCGCAGAGGCGCGTAGGGGCGCTGGCCGTCATCACAGCA GATTTTGATGCGTTTAAGCGTCTTTGCCTTGCCGGACATACGGAAGAGCTGACGAAGTACCTCTCCTCCCTTACACACCC CTACTGGAGTACCCATGTAACGCTTCCTTCCCCACCGTCTCCCCGCCCCATGGCCCTGATGGGCCGGGATAGAATTCTGG ACTTCATCATCAATCACCTTCTCCCGATGAAAGATGACGAACATGCATGGAAGCATTATCTTTCCCTCCGGGCCGGACAG GCGGGAACAAAAGTCCTCTCCGTCCACCAATCCCTGCTGGGCGGCAGGCCGGATGCACACGCCTTTCTTGCGAAAGCCTG GCACCACCAAGCATTGCTTCAAATTCACGAAGACCTGTGTTCCCTCCATTCCTGCGCCATTTGCTCCCTGCTCAGGCAGA TGGAAAAGAAATGA
Upstream 100 bases:
>100_bases AAATGAGCGAAGAGAACGAAGAAAAATTCCGCAACGTAACCGACTGCCTGAAAGAAGAATTGGAACGGCAGAAAGATCAA TAAAAATACCTCCCCTCCAC
Downstream 100 bases:
>100_bases GAGCGCAGCCCTTCTTTCCTTAAGACGGGGTGAAGAACCGCCCCCTGCGAAAACCCTTCCCAATCTTTACATCCCGAGAG GAATTCCTTCTTTCGGAACG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 457; Mature: 457
Protein sequence:
>457_residues MDLRSMASLYEEALSAAREEGPAAVREHSVSNHSALPDERTLQLLLLEGVFGTSFTDDSGRDVHILDFGNWNKSAGPDFL NARICINGVPQSGDIELDPAPEDWERHGHGSNPGFNGVILHLACAPSRRKWFTRNARHERVPLAVIPPATLARSGTSPSG NAPVRHCRHSGLLASMAPEFLETLLQSAAAYRFRNKHRRHAERAKYAGEEQALFENLAETLGYHANKTAMRHLALRAPLR SIRNCPEALLFGTAGFLLPVLPASCTPEAVELHKKLWAQWWPLRAQFELAPDRSFPWTYSGNRPANHPQRRVGALAVITA DFDAFKRLCLAGHTEELTKYLSSLTHPYWSTHVTLPSPPSPRPMALMGRDRILDFIINHLLPMKDDEHAWKHYLSLRAGQ AGTKVLSVHQSLLGGRPDAHAFLAKAWHHQALLQIHEDLCSLHSCAICSLLRQMEKK
Sequences:
>Translated_457_residues MDLRSMASLYEEALSAAREEGPAAVREHSVSNHSALPDERTLQLLLLEGVFGTSFTDDSGRDVHILDFGNWNKSAGPDFL NARICINGVPQSGDIELDPAPEDWERHGHGSNPGFNGVILHLACAPSRRKWFTRNARHERVPLAVIPPATLARSGTSPSG NAPVRHCRHSGLLASMAPEFLETLLQSAAAYRFRNKHRRHAERAKYAGEEQALFENLAETLGYHANKTAMRHLALRAPLR SIRNCPEALLFGTAGFLLPVLPASCTPEAVELHKKLWAQWWPLRAQFELAPDRSFPWTYSGNRPANHPQRRVGALAVITA DFDAFKRLCLAGHTEELTKYLSSLTHPYWSTHVTLPSPPSPRPMALMGRDRILDFIINHLLPMKDDEHAWKHYLSLRAGQ AGTKVLSVHQSLLGGRPDAHAFLAKAWHHQALLQIHEDLCSLHSCAICSLLRQMEKK >Mature_457_residues MDLRSMASLYEEALSAAREEGPAAVREHSVSNHSALPDERTLQLLLLEGVFGTSFTDDSGRDVHILDFGNWNKSAGPDFL NARICINGVPQSGDIELDPAPEDWERHGHGSNPGFNGVILHLACAPSRRKWFTRNARHERVPLAVIPPATLARSGTSPSG NAPVRHCRHSGLLASMAPEFLETLLQSAAAYRFRNKHRRHAERAKYAGEEQALFENLAETLGYHANKTAMRHLALRAPLR SIRNCPEALLFGTAGFLLPVLPASCTPEAVELHKKLWAQWWPLRAQFELAPDRSFPWTYSGNRPANHPQRRVGALAVITA DFDAFKRLCLAGHTEELTKYLSSLTHPYWSTHVTLPSPPSPRPMALMGRDRILDFIINHLLPMKDDEHAWKHYLSLRAGQ AGTKVLSVHQSLLGGRPDAHAFLAKAWHHQALLQIHEDLCSLHSCAICSLLRQMEKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50965; Mature: 50965
Theoretical pI: Translated: 8.51; Mature: 8.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLRSMASLYEEALSAAREEGPAAVREHSVSNHSALPDERTLQLLLLEGVFGTSFTDDSG CCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC RDVHILDFGNWNKSAGPDFLNARICINGVPQSGDIELDPAPEDWERHGHGSNPGFNGVIL CEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCEEECCCCCHHHHCCCCCCCCCCCEEE HLACAPSRRKWFTRNARHERVPLAVIPPATLARSGTSPSGNAPVRHCRHSGLLASMAPEF EEEECCCHHHHHHCCCCCCCCCEEEECCHHHHCCCCCCCCCCHHHHHHHCCHHHHHHHHH LETLLQSAAAYRFRNKHRRHAERAKYAGEEQALFENLAETLGYHANKTAMRHLALRAPLR HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH SIRNCPEALLFGTAGFLLPVLPASCTPEAVELHKKLWAQWWPLRAQFELAPDRSFPWTYS HHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC GNRPANHPQRRVGALAVITADFDAFKRLCLAGHTEELTKYLSSLTHPYWSTHVTLPSPPS CCCCCCCHHHHHCEEEEEECCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEECCCCCC PRPMALMGRDRILDFIINHLLPMKDDEHAWKHYLSLRAGQAGTKVLSVHQSLLGGRPDAH CCCEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHH AFLAKAWHHQALLQIHEDLCSLHSCAICSLLRQMEKK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MDLRSMASLYEEALSAAREEGPAAVREHSVSNHSALPDERTLQLLLLEGVFGTSFTDDSG CCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC RDVHILDFGNWNKSAGPDFLNARICINGVPQSGDIELDPAPEDWERHGHGSNPGFNGVIL CEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCEEECCCCCHHHHCCCCCCCCCCCEEE HLACAPSRRKWFTRNARHERVPLAVIPPATLARSGTSPSGNAPVRHCRHSGLLASMAPEF EEEECCCHHHHHHCCCCCCCCCEEEECCHHHHCCCCCCCCCCHHHHHHHCCHHHHHHHHH LETLLQSAAAYRFRNKHRRHAERAKYAGEEQALFENLAETLGYHANKTAMRHLALRAPLR HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH SIRNCPEALLFGTAGFLLPVLPASCTPEAVELHKKLWAQWWPLRAQFELAPDRSFPWTYS HHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC GNRPANHPQRRVGALAVITADFDAFKRLCLAGHTEELTKYLSSLTHPYWSTHVTLPSPPS CCCCCCCHHHHHCEEEEEECCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEECCCCCC PRPMALMGRDRILDFIINHLLPMKDDEHAWKHYLSLRAGQAGTKVLSVHQSLLGGRPDAH CCCEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHH AFLAKAWHHQALLQIHEDLCSLHSCAICSLLRQMEKK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA