Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735600
Identifier: 187735600
GI number: 187735600
Start: 1320336
End: 1320995
Strand: Reverse
Name: 187735600
Synonym: Amuc_1105
Alternate gene names: NA
Gene position: 1320995-1320336 (Counterclockwise)
Preceding gene: 187735604
Following gene: 187735597
Centisome position: 49.59
GC content: 53.03
Gene sequence:
>660_bases ATGCCCGTTTCCCCTTTAATTACCCATCCCCTTCACGCGGACTCCAGGCAGAGCTGTTTTGGAGGCGTCTGGTATAATCC CTCGGAACAGGCCGTCTGGAATTCTCCAAGGCTGAAAGTATATGTAGCCCCCGTCAATATTGACTATATCAAAGCCAGAT TCCCCAAGGAATCCCCGTCCCTGGCGGCACAATTCAGGGCCGGGCTGCAGAAAGACATCCGCAACGTGTTGGAAAACAAA TCCAGACAGACAGGCGGGAGGATGAAATGGCAGTTGGTTGACCGCCCCGTTCCGGGATCTGTAACTCTCAGCCTCGCCAT AGTCAAGCTGAAGCCTACGGACGTGGGCGGCAACATCATGTCCGATCTTGTTTCCCTGGTCTCCCCCCTTCCGGGAACTT CCCTGATCCTGGGGCGCTTCATGAGCGGGGACGTAGGCATTGAGGGACGCCTGTCAAATACGAATACGGACGCCGGCATC ATGGAATTCAAAGCTTACAACACGGATCCCATCACCCTGTTTTCCGTAAAGGAATTTGAACGTTTTGCCTTCGACCAACG GAATTTGCGGCTTTTTTCCAGCTGCATTGCAGATATTTTCAAGGCTGGTCCCGCCAGCAGTATTCCCAAAACAGGGGAAT TTGACCTGGACCCGTTTTAA
Upstream 100 bases:
>100_bases CCGGGCGGATACCGTCTTATTCTGCATGCACGGCGCTATTCCACGGCTATTCCTGGCGCTGGGAACAGGTTTGGTTTTTT CCTGTTCCAGTTCCCGGACA
Downstream 100 bases:
>100_bases ACGGCCTTTCCGGACGATTCATTCCCGTCTTTCTTTTCAGGTTCATAGAAAGCGCATTCCTGAACCGTCTGCCTGGTCTT GAAGGCATATACAAAGAAAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 219; Mature: 218
Protein sequence:
>219_residues MPVSPLITHPLHADSRQSCFGGVWYNPSEQAVWNSPRLKVYVAPVNIDYIKARFPKESPSLAAQFRAGLQKDIRNVLENK SRQTGGRMKWQLVDRPVPGSVTLSLAIVKLKPTDVGGNIMSDLVSLVSPLPGTSLILGRFMSGDVGIEGRLSNTNTDAGI MEFKAYNTDPITLFSVKEFERFAFDQRNLRLFSSCIADIFKAGPASSIPKTGEFDLDPF
Sequences:
>Translated_219_residues MPVSPLITHPLHADSRQSCFGGVWYNPSEQAVWNSPRLKVYVAPVNIDYIKARFPKESPSLAAQFRAGLQKDIRNVLENK SRQTGGRMKWQLVDRPVPGSVTLSLAIVKLKPTDVGGNIMSDLVSLVSPLPGTSLILGRFMSGDVGIEGRLSNTNTDAGI MEFKAYNTDPITLFSVKEFERFAFDQRNLRLFSSCIADIFKAGPASSIPKTGEFDLDPF >Mature_218_residues PVSPLITHPLHADSRQSCFGGVWYNPSEQAVWNSPRLKVYVAPVNIDYIKARFPKESPSLAAQFRAGLQKDIRNVLENKS RQTGGRMKWQLVDRPVPGSVTLSLAIVKLKPTDVGGNIMSDLVSLVSPLPGTSLILGRFMSGDVGIEGRLSNTNTDAGIM EFKAYNTDPITLFSVKEFERFAFDQRNLRLFSSCIADIFKAGPASSIPKTGEFDLDPF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24134; Mature: 24003
Theoretical pI: Translated: 9.47; Mature: 9.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVSPLITHPLHADSRQSCFGGVWYNPSEQAVWNSPRLKVYVAPVNIDYIKARFPKESPS CCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEECCCCEEEEEEECCEEEEEEECCCCCHH LAAQFRAGLQKDIRNVLENKSRQTGGRMKWQLVDRPVPGSVTLSLAIVKLKPTDVGGNIM HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEEEEEEEEECCCCCCHHH SDLVSLVSPLPGTSLILGRFMSGDVGIEGRLSNTNTDAGIMEFKAYNTDPITLFSVKEFE HHHHHHHCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCEEEEEECCCCCEEEEEHHHHH RFAFDQRNLRLFSSCIADIFKAGPASSIPKTGEFDLDPF HHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC >Mature Secondary Structure PVSPLITHPLHADSRQSCFGGVWYNPSEQAVWNSPRLKVYVAPVNIDYIKARFPKESPS CCCCCCCCCCCCCCCCCCCCCCEECCCCCCEECCCCEEEEEEECCEEEEEEECCCCCHH LAAQFRAGLQKDIRNVLENKSRQTGGRMKWQLVDRPVPGSVTLSLAIVKLKPTDVGGNIM HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEEEEEEEEECCCCCCHHH SDLVSLVSPLPGTSLILGRFMSGDVGIEGRLSNTNTDAGIMEFKAYNTDPITLFSVKEFE HHHHHHHCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCEEEEEECCCCCEEEEEHHHHH RFAFDQRNLRLFSSCIADIFKAGPASSIPKTGEFDLDPF HHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA