Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is 187735597
Identifier: 187735597
GI number: 187735597
Start: 1317279
End: 1317995
Strand: Reverse
Name: 187735597
Synonym: Amuc_1102
Alternate gene names: NA
Gene position: 1317995-1317279 (Counterclockwise)
Preceding gene: 187735600
Following gene: 187735596
Centisome position: 49.47
GC content: 55.09
Gene sequence:
>717_bases ATGAAATCCATCCTTAACACTATCACGGCCATGCTGGCTGCGGTGCTTTTCGTCCCTGCGGCATCGGCGCAGACCACCAG CAATCCCAGAATGCAGGTGCGGGTCTCCCTGGAAAAGCTGTCCCTGTATATGCGCCAGTCCCCCAACGTCCTGACGCAGG ACGATCCCCGGCCGCTGCCGAAACCGAAGAAATGGGCGGATTTTGAAATTCCCTTCAAGGTGGAAGCCGCTCCCACCCCC AAATCCGGCTATATTGATGCCCTGACGTTCAAATTCTACATCGCGGTAGTCAATCCGGACCGCTCCCGCCAGTATCTGAA ACTGTATAAGGAAGTCAAATACGTCAATGTTCCGGTAGGAGAAAACACGTACGCTTCCGTGTATCTCTCCCCGTCCTCCG TCAAGCGCATTACCGGTGTGGAAGGAGGAAGAGGAAAATGGGTGAAGTACCAGGGCGTAGTGGTGGAATACAACGGCAAG ATTGTCGCCACTTATTCCTCCGAACGCGGCAAAATGGAAAAATGGTGGACCATCCAGTCCCCCAGCATCGTGGAGACCTC TTATTACCCCCTGCTGAACAAGGATGAAACTCCTTTCTCCGTGTTCTGGTACGACCGTTATCCGGAAATTATGAGGCCCA ACAGCCAGCAGGCGGCTTCCAGTTCCGTCCCCGCCCCGTTCGGTACTCCTGTGGAACCTCCGGCGGACGGCGAATAA
Upstream 100 bases:
>100_bases CCGTGTCATGCTCCACACACGCTACATGGAAAGAAACAAGAGATTTTTGCTAGCCACAGTTCGGTTTTTGGTGTAACTAA TCAGGGAATTGAATTGTGCT
Downstream 100 bases:
>100_bases CGTTCCATTAATTCTATCATTTCATCTTATTTAACAGAAATCACCCATGGCTAATTCACGACCAATCGTCGCATTAAACG TAGGTTCCCAGAGAGTTTCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 238; Mature: 238
Protein sequence:
>238_residues MKSILNTITAMLAAVLFVPAASAQTTSNPRMQVRVSLEKLSLYMRQSPNVLTQDDPRPLPKPKKWADFEIPFKVEAAPTP KSGYIDALTFKFYIAVVNPDRSRQYLKLYKEVKYVNVPVGENTYASVYLSPSSVKRITGVEGGRGKWVKYQGVVVEYNGK IVATYSSERGKMEKWWTIQSPSIVETSYYPLLNKDETPFSVFWYDRYPEIMRPNSQQAASSSVPAPFGTPVEPPADGE
Sequences:
>Translated_238_residues MKSILNTITAMLAAVLFVPAASAQTTSNPRMQVRVSLEKLSLYMRQSPNVLTQDDPRPLPKPKKWADFEIPFKVEAAPTP KSGYIDALTFKFYIAVVNPDRSRQYLKLYKEVKYVNVPVGENTYASVYLSPSSVKRITGVEGGRGKWVKYQGVVVEYNGK IVATYSSERGKMEKWWTIQSPSIVETSYYPLLNKDETPFSVFWYDRYPEIMRPNSQQAASSSVPAPFGTPVEPPADGE >Mature_238_residues MKSILNTITAMLAAVLFVPAASAQTTSNPRMQVRVSLEKLSLYMRQSPNVLTQDDPRPLPKPKKWADFEIPFKVEAAPTP KSGYIDALTFKFYIAVVNPDRSRQYLKLYKEVKYVNVPVGENTYASVYLSPSSVKRITGVEGGRGKWVKYQGVVVEYNGK IVATYSSERGKMEKWWTIQSPSIVETSYYPLLNKDETPFSVFWYDRYPEIMRPNSQQAASSSVPAPFGTPVEPPADGE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26791; Mature: 26791
Theoretical pI: Translated: 9.74; Mature: 9.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSILNTITAMLAAVLFVPAASAQTTSNPRMQVRVSLEKLSLYMRQSPNVLTQDDPRPLP CHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCC KPKKWADFEIPFKVEAAPTPKSGYIDALTFKFYIAVVNPDRSRQYLKLYKEVKYVNVPVG CCCCCCCEECCEEEECCCCCCCCCEEEEEEEEEEEEECCCCCHHHHHHHHHCEEEECCCC ENTYASVYLSPSSVKRITGVEGGRGKWVKYQGVVVEYNGKIVATYSSERGKMEKWWTIQS CCCEEEEEECHHHHHHECCCCCCCCCEEEEEEEEEEECCEEEEEECCCCCCCEEEEEECC PSIVETSYYPLLNKDETPFSVFWYDRYPEIMRPNSQQAASSSVPAPFGTPVEPPADGE CCEEEECCCCCCCCCCCCEEEEEECCCHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKSILNTITAMLAAVLFVPAASAQTTSNPRMQVRVSLEKLSLYMRQSPNVLTQDDPRPLP CHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCC KPKKWADFEIPFKVEAAPTPKSGYIDALTFKFYIAVVNPDRSRQYLKLYKEVKYVNVPVG CCCCCCCEECCEEEECCCCCCCCCEEEEEEEEEEEEECCCCCHHHHHHHHHCEEEECCCC ENTYASVYLSPSSVKRITGVEGGRGKWVKYQGVVVEYNGKIVATYSSERGKMEKWWTIQS CCCEEEEEECHHHHHHECCCCCCCCCEEEEEEEEEEECCEEEEEECCCCCCCEEEEEECC PSIVETSYYPLLNKDETPFSVFWYDRYPEIMRPNSQQAASSSVPAPFGTPVEPPADGE CCEEEECCCCCCCCCCCCEEEEEECCCHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA