Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is phoR [H]
Identifier: 187735604
GI number: 187735604
Start: 1324301
End: 1325530
Strand: Reverse
Name: phoR [H]
Synonym: Amuc_1109
Alternate gene names: 187735604
Gene position: 1325530-1324301 (Counterclockwise)
Preceding gene: 187735605
Following gene: 187735600
Centisome position: 49.76
GC content: 57.15
Gene sequence:
>1230_bases ATGTCGGCCATCGACTACATCCTAACCATCCTTATTCTGGCCTCCCTGTACCTGAACTGGCATCTGGTCCAGGTATGTCG GTCCGCCATGAAAGCCCGGAAAAAAGCCTTGCGGGACGCTCAGCGCCTGCTGAAGCGCGGGGAAGAAGCGCAGGAACAGG CCATCGCGGACAAACGGCGCTTCCTGGAAGCTCTGGGAGAGGCCTTCCTGCTCATCGGTCCATCCGGACACATCGTGCTG GCTAATACGCTGGCCAAAGAACTCTTTCAGGAAGAAAAGCTGGAAGGGCGCAAAGTGGGGGCCCTGGTCTGCAACCAGGA ATTGCTGGGGCATGTTCAGGAAGCATTCGATACGGACGGCCCCGTCACCAAGGAATTCACGCTGAGCGCCGCCAATTCCC CCGGCGGCGTGCAAAACGGCATCACGGCGTGGCATCTGGACAGCGCCATCACGGACGCCCCAATCAGAGAAAAGCGCATC CTGCTGCGCAACATCACGCAGAACTACCTCACCAACCAGATGCGCCGGGACTTCGTGGCAAACGCCTCCCACGAGCTGCG TACGCCCCTCACCATCATCGTGGGATATCTGGAAAACCTGATGGAGGACGATCTGGTGGAGGAAAGTCCCGGACTGGCCC GCAAATTCATCGGAGTCATGCACCAGAACAGCCAGAGGCTGATGAACATTATTGAAGACATGCTCATGATCTCCAAACTC GAATCAGGCCACAAGGCGATTCTGAAGGAGCAGTGGTTCCGCCTCACCTCCTGCGCGGACGACGTCTTCTCCCGTCTGGA TTCCATCCGGGAGAAAAAACAGGCCGTCCTGCACATGGACATTCCCACGGATTGGGAACTTTATGGAGATCCCTTTTACT GGACGCAAATTCTGTTCAATTTGGTGGAAAACGCCCTCAAGCAAAACACGGAGCCGGGACTTTCCATTACTGTGGCCGCC GCCAAAACACAGGACGCCTGCGTCATCACCGTCACGGATACGGGCGTGGGCATTCCTGTGGAAAGCATCCCCTTCCTCTT CAACCGCTTTTACCGGGTGGAAACCCACCACTCCTCGGAAATCAAGGGAACGGGCCTAGGCCTCTCCATTGTGAAACGCG CCGTGGAAGCCCACGACGGAGCCATCACCGTCTCCAGCATCCCCCACCGGGAAACTGTTTTTACCATCACCATTCCCCTG AAAAGGTTCCGGGAAGAAAAGGCGGCGTAA
Upstream 100 bases:
>100_bases TCCCTACGCGGACTGCATTGAAACCGTCCGCAGCATCGGCTACCGCTTTACCCTGCCGGGACGCCGCATCCCGGAGGAAA AGGCTTAACACTCCGGTTCC
Downstream 100 bases:
>100_bases AACGCCGATGCGGAACAGTCTGACATGGCCTGCCGTTAAAACCGGAAAAAAGGCATCCTTTCAACCCGGAGGGATGGCCC ACGAGACATCCGCCTGTTTT
Product: histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 409; Mature: 408
Protein sequence:
>409_residues MSAIDYILTILILASLYLNWHLVQVCRSAMKARKKALRDAQRLLKRGEEAQEQAIADKRRFLEALGEAFLLIGPSGHIVL ANTLAKELFQEEKLEGRKVGALVCNQELLGHVQEAFDTDGPVTKEFTLSAANSPGGVQNGITAWHLDSAITDAPIREKRI LLRNITQNYLTNQMRRDFVANASHELRTPLTIIVGYLENLMEDDLVEESPGLARKFIGVMHQNSQRLMNIIEDMLMISKL ESGHKAILKEQWFRLTSCADDVFSRLDSIREKKQAVLHMDIPTDWELYGDPFYWTQILFNLVENALKQNTEPGLSITVAA AKTQDACVITVTDTGVGIPVESIPFLFNRFYRVETHHSSEIKGTGLGLSIVKRAVEAHDGAITVSSIPHRETVFTITIPL KRFREEKAA
Sequences:
>Translated_409_residues MSAIDYILTILILASLYLNWHLVQVCRSAMKARKKALRDAQRLLKRGEEAQEQAIADKRRFLEALGEAFLLIGPSGHIVL ANTLAKELFQEEKLEGRKVGALVCNQELLGHVQEAFDTDGPVTKEFTLSAANSPGGVQNGITAWHLDSAITDAPIREKRI LLRNITQNYLTNQMRRDFVANASHELRTPLTIIVGYLENLMEDDLVEESPGLARKFIGVMHQNSQRLMNIIEDMLMISKL ESGHKAILKEQWFRLTSCADDVFSRLDSIREKKQAVLHMDIPTDWELYGDPFYWTQILFNLVENALKQNTEPGLSITVAA AKTQDACVITVTDTGVGIPVESIPFLFNRFYRVETHHSSEIKGTGLGLSIVKRAVEAHDGAITVSSIPHRETVFTITIPL KRFREEKAA >Mature_408_residues SAIDYILTILILASLYLNWHLVQVCRSAMKARKKALRDAQRLLKRGEEAQEQAIADKRRFLEALGEAFLLIGPSGHIVLA NTLAKELFQEEKLEGRKVGALVCNQELLGHVQEAFDTDGPVTKEFTLSAANSPGGVQNGITAWHLDSAITDAPIREKRIL LRNITQNYLTNQMRRDFVANASHELRTPLTIIVGYLENLMEDDLVEESPGLARKFIGVMHQNSQRLMNIIEDMLMISKLE SGHKAILKEQWFRLTSCADDVFSRLDSIREKKQAVLHMDIPTDWELYGDPFYWTQILFNLVENALKQNTEPGLSITVAAA KTQDACVITVTDTGVGIPVESIPFLFNRFYRVETHHSSEIKGTGLGLSIVKRAVEAHDGAITVSSIPHRETVFTITIPLK RFREEKAA
Specific function: Member of the two-component regulatory system phoP/phoR involved in the alkaline phosphatase genes regulation. PhoR may function as a membrane-associated protein kinase that phosphorylates phoP in response to environmental signals [H]
COG id: COG0642
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
Organism=Escherichia coli, GI1786600, Length=260, Percent_Identity=33.4615384615385, Blast_Score=124, Evalue=7e-30, Organism=Escherichia coli, GI145693157, Length=233, Percent_Identity=34.7639484978541, Blast_Score=113, Evalue=2e-26, Organism=Escherichia coli, GI1789149, Length=227, Percent_Identity=33.4801762114537, Blast_Score=108, Evalue=5e-25, Organism=Escherichia coli, GI1788393, Length=232, Percent_Identity=31.0344827586207, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1788713, Length=232, Percent_Identity=31.4655172413793, Blast_Score=102, Evalue=5e-23, Organism=Escherichia coli, GI48994928, Length=232, Percent_Identity=30.6034482758621, Blast_Score=95, Evalue=6e-21, Organism=Escherichia coli, GI1786783, Length=227, Percent_Identity=29.9559471365639, Blast_Score=92, Evalue=7e-20, Organism=Escherichia coli, GI1790346, Length=237, Percent_Identity=30.379746835443, Blast_Score=88, Evalue=1e-18, Organism=Escherichia coli, GI1786912, Length=233, Percent_Identity=31.3304721030043, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1790436, Length=251, Percent_Identity=27.4900398406374, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI87081816, Length=246, Percent_Identity=28.4552845528455, Blast_Score=81, Evalue=1e-16, Organism=Escherichia coli, GI1790861, Length=217, Percent_Identity=28.5714285714286, Blast_Score=78, Evalue=1e-15, Organism=Escherichia coli, GI1788549, Length=232, Percent_Identity=25.4310344827586, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI1790551, Length=205, Percent_Identity=28.780487804878, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI87082128, Length=243, Percent_Identity=24.6913580246914, Blast_Score=66, Evalue=4e-12, Organism=Escherichia coli, GI1787374, Length=244, Percent_Identity=23.3606557377049, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1790300, Length=243, Percent_Identity=28.8065843621399, Blast_Score=62, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR000014 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 45944; Mature: 45812
Theoretical pI: Translated: 6.65; Mature: 6.65
Prosite motif: PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAIDYILTILILASLYLNWHLVQVCRSAMKARKKALRDAQRLLKRGEEAQEQAIADKRR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH FLEALGEAFLLIGPSGHIVLANTLAKELFQEEKLEGRKVGALVCNQELLGHVQEAFDTDG HHHHHCCEEEEECCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC PVTKEFTLSAANSPGGVQNGITAWHLDSAITDAPIREKRILLRNITQNYLTNQMRRDFVA CCCCEEEEECCCCCCCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH NASHELRTPLTIIVGYLENLMEDDLVEESPGLARKFIGVMHQNSQRLMNIIEDMLMISKL CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHH ESGHKAILKEQWFRLTSCADDVFSRLDSIREKKQAVLHMDIPTDWELYGDPFYWTQILFN CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCHHHHHHHHH LVENALKQNTEPGLSITVAAAKTQDACVITVTDTGVGIPVESIPFLFNRFYRVETHHSSE HHHHHHHCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHEECCCCCC IKGTGLGLSIVKRAVEAHDGAITVSSIPHRETVFTITIPLKRFREEKAA CCCCCCCHHHHHHHHHHCCCEEEECCCCCCCEEEEEEECHHHHHHHCCC >Mature Secondary Structure SAIDYILTILILASLYLNWHLVQVCRSAMKARKKALRDAQRLLKRGEEAQEQAIADKRR CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH FLEALGEAFLLIGPSGHIVLANTLAKELFQEEKLEGRKVGALVCNQELLGHVQEAFDTDG HHHHHCCEEEEECCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC PVTKEFTLSAANSPGGVQNGITAWHLDSAITDAPIREKRILLRNITQNYLTNQMRRDFVA CCCCEEEEECCCCCCCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH NASHELRTPLTIIVGYLENLMEDDLVEESPGLARKFIGVMHQNSQRLMNIIEDMLMISKL CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHH ESGHKAILKEQWFRLTSCADDVFSRLDSIREKKQAVLHMDIPTDWELYGDPFYWTQILFN CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCHHHHHHHHH LVENALKQNTEPGLSITVAAAKTQDACVITVTDTGVGIPVESIPFLFNRFYRVETHHSSE HHHHHHHCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHEECCCCCC IKGTGLGLSIVKRAVEAHDGAITVSSIPHRETVFTITIPLKRFREEKAA CCCCCCCHHHHHHHHHHCCCEEEECCCCCCCEEEEEEECHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 3142862; 9387221; 9384377 [H]