Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is 187735507
Identifier: 187735507
GI number: 187735507
Start: 1207542
End: 1208348
Strand: Direct
Name: 187735507
Synonym: Amuc_1012
Alternate gene names: NA
Gene position: 1207542-1208348 (Clockwise)
Preceding gene: 187735506
Following gene: 187735508
Centisome position: 45.33
GC content: 58.98
Gene sequence:
>807_bases ATGTCCCGTCTTAATCTCATCGTGGAATCCCTGCTGAAGGACATTATTGAAGCGCAGCATGCGGCAAACTGCCACGCGGC ATCACTGGCGCGCCAGTATGGGAAGAGAGGCCGTGCGTGCGGTTTCCCGCTTCCCAGCGCCCAGATAGGCTCCCTGGAAT TCGATTTGAAATATGCGGTGACGGGAACTTCCGGGGTGGAGGAGAAACAGGTTGCGGACACGGAGCAGTGGAGCCTGTTC CGGCAGGAACTGGAAGAGCGCGTGCCGGCGTTTGCCATCCGTTCCATTGTGATGGCCGTGGTGCATTCCAGCCTTCCGGA CGACGAAGCGAGAAGCGACTTCTCAAGCCTGCTGGCCAGGGAGGAACAGTGGAAAAAGAATTTCTGCTCCTACCTGGGGA AGAAAATTTCCGCAGCCGTTTCCGCTCATGAGGGCGCGCTCCTGAAGGCGGAACCCGGGCTGGACAGGGGATTGCTGCTG GAGCTTCTGGCAGGCGTCGCGGAAAGGGAGTTCATGGATAATCCGGAGCTGGAGGACCTGTTCCAGGGAACCCGGGGAGA CCCCCTCAGGCAGGAATGCCGCGCCAATCTCCGGGAAGGCCTTTCCTCTTTCTTGGCCGCTCTGGCGGAAAAGTACGTCC TCACCAGGCAGGAAAGCAGTGTGGTGGTGGATGTGGAAGTAGAGGCGGACAAGCTGAAAAAGATGCCGGAGGAAGCCGTG CAGACCCTGCGCCTGAATATATCCCCTGCTTCCATTCCCTCCGTTCTGGCGGAGCAGAATGATGTTTCCGGGTTGTCCGC GCAATAG
Upstream 100 bases:
>100_bases ACGCCAGAAACTGCACGGTGAGCGCTGGAGAACTCAAGAGGAAGGTGGCTGTAGGCGCCTGATAACCGAACCATAGCGAT TTCTCCTCCATTCCAGAGCC
Downstream 100 bases:
>100_bases TGATAGATGATGAGTGATTCTACAAATAATAACAAGGTGAACGGGCACATTATGAGCCTGCAGCAGCTGATTTCAGCGCC GCTGGTCGCAACGATTGACG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 268; Mature: 267
Protein sequence:
>268_residues MSRLNLIVESLLKDIIEAQHAANCHAASLARQYGKRGRACGFPLPSAQIGSLEFDLKYAVTGTSGVEEKQVADTEQWSLF RQELEERVPAFAIRSIVMAVVHSSLPDDEARSDFSSLLAREEQWKKNFCSYLGKKISAAVSAHEGALLKAEPGLDRGLLL ELLAGVAEREFMDNPELEDLFQGTRGDPLRQECRANLREGLSSFLAALAEKYVLTRQESSVVVDVEVEADKLKKMPEEAV QTLRLNISPASIPSVLAEQNDVSGLSAQ
Sequences:
>Translated_268_residues MSRLNLIVESLLKDIIEAQHAANCHAASLARQYGKRGRACGFPLPSAQIGSLEFDLKYAVTGTSGVEEKQVADTEQWSLF RQELEERVPAFAIRSIVMAVVHSSLPDDEARSDFSSLLAREEQWKKNFCSYLGKKISAAVSAHEGALLKAEPGLDRGLLL ELLAGVAEREFMDNPELEDLFQGTRGDPLRQECRANLREGLSSFLAALAEKYVLTRQESSVVVDVEVEADKLKKMPEEAV QTLRLNISPASIPSVLAEQNDVSGLSAQ >Mature_267_residues SRLNLIVESLLKDIIEAQHAANCHAASLARQYGKRGRACGFPLPSAQIGSLEFDLKYAVTGTSGVEEKQVADTEQWSLFR QELEERVPAFAIRSIVMAVVHSSLPDDEARSDFSSLLAREEQWKKNFCSYLGKKISAAVSAHEGALLKAEPGLDRGLLLE LLAGVAEREFMDNPELEDLFQGTRGDPLRQECRANLREGLSSFLAALAEKYVLTRQESSVVVDVEVEADKLKKMPEEAVQ TLRLNISPASIPSVLAEQNDVSGLSAQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29428; Mature: 29296
Theoretical pI: Translated: 4.73; Mature: 4.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRLNLIVESLLKDIIEAQHAANCHAASLARQYGKRGRACGFPLPSAQIGSLEFDLKYAV CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEE TGTSGVEEKQVADTEQWSLFRQELEERVPAFAIRSIVMAVVHSSLPDDEARSDFSSLLAR ECCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH EEQWKKNFCSYLGKKISAAVSAHEGALLKAEPGLDRGLLLELLAGVAEREFMDNPELEDL HHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCHHHH FQGTRGDPLRQECRANLREGLSSFLAALAEKYVLTRQESSVVVDVEVEADKLKKMPEEAV HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHCCHHHHH QTLRLNISPASIPSVLAEQNDVSGLSAQ HHHHCCCCHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure SRLNLIVESLLKDIIEAQHAANCHAASLARQYGKRGRACGFPLPSAQIGSLEFDLKYAV CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEE TGTSGVEEKQVADTEQWSLFRQELEERVPAFAIRSIVMAVVHSSLPDDEARSDFSSLLAR ECCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH EEQWKKNFCSYLGKKISAAVSAHEGALLKAEPGLDRGLLLELLAGVAEREFMDNPELEDL HHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCHHHH FQGTRGDPLRQECRANLREGLSSFLAALAEKYVLTRQESSVVVDVEVEADKLKKMPEEAV HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHCCHHHHH QTLRLNISPASIPSVLAEQNDVSGLSAQ HHHHCCCCHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA