Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735506
Identifier: 187735506
GI number: 187735506
Start: 1206664
End: 1207503
Strand: Direct
Name: 187735506
Synonym: Amuc_1011
Alternate gene names: NA
Gene position: 1206664-1207503 (Clockwise)
Preceding gene: 187735505
Following gene: 187735507
Centisome position: 45.29
GC content: 55.95
Gene sequence:
>840_bases ATGGCAATTGACAGATCAGCAGCAGAAGCGGCGACTTCCTCCCTGCAGTCGCTGCCTTTCGGCAACATCATCGGCGGTCC CCTGGTCGCCTGTGTGGAAGCACAGGCCCAGGCGGCCCGGACTTCCTGGGAATTCATCCAGAACGTGGGCCTGTACGCGG ATGGGGAAGAGAAGAAGACGGTGAACGTTTCCTTCCAGTTCATCAAGGACGGCCGCATGGCTCAGATTACGGTTCCCCTT CTGACCATCGTCCCCATTCCCTATATCGCCATTAACTCCATCGACATCAATTTCAAGGCGAATATCAGCGCGTCCGCCGC CAGTACGGAGACGGAAAATTCCTCCAGTTCCGTAGACACCAGCGTTTCCGCCTCTGCAAGGTGCTTTTGGGCGCGCGGCA GCATGAATGCCAGCTATTCCAGCAAAAAGGACTCCTCTGCGACCAGGGATTCCAAATACAGCGTGGAATACACCATGGAC GTAGCCGTCCATGCCGGACAGGACAGTATGCCTGCCGGGATGGCCAAGGTGCTGGAGATGCTGAACAATAGCATTTCCGT CGTTTCTCCGGAAGGGTTCCTGGACGTGCAGCATGCCATCCAGGACGACGGAACCGTGAAATTGATAACCTCCTACAAAA ACAGGGAGGGGCTGTTTGACCCGGAAGCCATCACCCTGCGGATAGGCGAAGCGACGGAAATATTTGAAAACGGTGCGGGG AATGAAGCCAGGATTGTGAAAACGGATTCCGGCAAGGAATACACACTTTCCAGGGAAGACGCCAGAAACTGCACGGTGAG CGCTGGAGAACTCAAGAGGAAGGTGGCTGTAGGCGCCTGA
Upstream 100 bases:
>100_bases AAAGGCGGGATGGAAGCAGAAACGGAATGGCCGCATCATTCACGACGTCGCCGGAAGGCGGCATATCAATGAATCTAAAC CAGAAATAGAAATTAAATAT
Downstream 100 bases:
>100_bases TAACCGAACCATAGCGATTTCTCCTCCATTCCAGAGCCATGTCCCGTCTTAATCTCATCGTGGAATCCCTGCTGAAGGAC ATTATTGAAGCGCAGCATGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 279; Mature: 278
Protein sequence:
>279_residues MAIDRSAAEAATSSLQSLPFGNIIGGPLVACVEAQAQAARTSWEFIQNVGLYADGEEKKTVNVSFQFIKDGRMAQITVPL LTIVPIPYIAINSIDINFKANISASAASTETENSSSSVDTSVSASARCFWARGSMNASYSSKKDSSATRDSKYSVEYTMD VAVHAGQDSMPAGMAKVLEMLNNSISVVSPEGFLDVQHAIQDDGTVKLITSYKNREGLFDPEAITLRIGEATEIFENGAG NEARIVKTDSGKEYTLSREDARNCTVSAGELKRKVAVGA
Sequences:
>Translated_279_residues MAIDRSAAEAATSSLQSLPFGNIIGGPLVACVEAQAQAARTSWEFIQNVGLYADGEEKKTVNVSFQFIKDGRMAQITVPL LTIVPIPYIAINSIDINFKANISASAASTETENSSSSVDTSVSASARCFWARGSMNASYSSKKDSSATRDSKYSVEYTMD VAVHAGQDSMPAGMAKVLEMLNNSISVVSPEGFLDVQHAIQDDGTVKLITSYKNREGLFDPEAITLRIGEATEIFENGAG NEARIVKTDSGKEYTLSREDARNCTVSAGELKRKVAVGA >Mature_278_residues AIDRSAAEAATSSLQSLPFGNIIGGPLVACVEAQAQAARTSWEFIQNVGLYADGEEKKTVNVSFQFIKDGRMAQITVPLL TIVPIPYIAINSIDINFKANISASAASTETENSSSSVDTSVSASARCFWARGSMNASYSSKKDSSATRDSKYSVEYTMDV AVHAGQDSMPAGMAKVLEMLNNSISVVSPEGFLDVQHAIQDDGTVKLITSYKNREGLFDPEAITLRIGEATEIFENGAGN EARIVKTDSGKEYTLSREDARNCTVSAGELKRKVAVGA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29772; Mature: 29640
Theoretical pI: Translated: 4.69; Mature: 4.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIDRSAAEAATSSLQSLPFGNIIGGPLVACVEAQAQAARTSWEFIQNVGLYADGEEKKT CCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEE VNVSFQFIKDGRMAQITVPLLTIVPIPYIAINSIDINFKANISASAASTETENSSSSVDT EEEEEEEECCCCEEEEEECHHHHCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCC SVSASARCFWARGSMNASYSSKKDSSATRDSKYSVEYTMDVAVHAGQDSMPAGMAKVLEM CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCHHHHHHHHH LNNSISVVSPEGFLDVQHAIQDDGTVKLITSYKNREGLFDPEAITLRIGEATEIFENGAG HCCCEEEECCCCCCHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCHHHHHHCCCC NEARIVKTDSGKEYTLSREDARNCTVSAGELKRKVAVGA CCEEEEECCCCCEEEECCCCCCCCEEEHHHHHHHHCCCC >Mature Secondary Structure AIDRSAAEAATSSLQSLPFGNIIGGPLVACVEAQAQAARTSWEFIQNVGLYADGEEKKT CCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEE VNVSFQFIKDGRMAQITVPLLTIVPIPYIAINSIDINFKANISASAASTETENSSSSVDT EEEEEEEECCCCEEEEEECHHHHCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCC SVSASARCFWARGSMNASYSSKKDSSATRDSKYSVEYTMDVAVHAGQDSMPAGMAKVLEM CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCHHHHHHHHH LNNSISVVSPEGFLDVQHAIQDDGTVKLITSYKNREGLFDPEAITLRIGEATEIFENGAG HCCCEEEECCCCCCHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCHHHHHHCCCC NEARIVKTDSGKEYTLSREDARNCTVSAGELKRKVAVGA CCEEEEECCCCCEEEECCCCCCCCEEEHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9389475 [H]