Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is ytqB [H]
Identifier: 187735461
GI number: 187735461
Start: 1145036
End: 1145743
Strand: Reverse
Name: ytqB [H]
Synonym: Amuc_0960
Alternate gene names: 187735461
Gene position: 1145743-1145036 (Counterclockwise)
Preceding gene: 187735468
Following gene: 187735458
Centisome position: 43.01
GC content: 61.16
Gene sequence:
>708_bases ATGCGGGAACACGCAGAAGGTTTTATGCCTCTTCCTAACACACGCCCTGCCAAAAAACAACCTGTCATTCTTCCCGCACC GGAATTTCATAAACGAATTGTCATACAGGCAAGGCTTCTGTACAACCCGGTCATGAAATGTTCCCTGCTCAGCCGCCCCA TGACCTGCGCTCATGACTGGATCAGCCGCGTCGTCTCCCCCGGGGACGCAGTCGTGGACGCCACGGCGGGCAACGGGCAC GATACGGTTTTCCTGGCCCGGCTGGTTGGCACTTCCGGCCAGGTGCACGCCTTTGACGTGCAGGAAGAAGCCATCCGCGC CACCAGGGAGCGTCTGGAGAAGGAAGGGCTGCTCACCCCTTCCGTCCAGCTCCATCTTGCCAGCCATGACCGCCTGGCGG AACTGGTCGGAGGCCCCGTGAAGGCCATCGTTTTCAACCTGGGCTATCTGCCGGGCGGGGACAAAAAAACGGTCACCAGG ACGGAATGCACCCTGGCGGCGCTGGAACAGGCCGCCGCTCTCATTGCCCCGAACGGGCTTCTCAGCGTCATGTGCTATCC CGGCCACGAAGGAGGAAAGGAAGAAGCGGAAGCCGTGGAAGCCTTCCTGTCCCGCCTGCCCCATCATTCCTGGCGCGCCG GCAAATACCAGCTCCTGAACACCGGAACACCGGCTCCCTTCCAGATATGCGCCTTCAGGCTGGACTGA
Upstream 100 bases:
>100_bases CATGTCCGATATGGCCGCCAGCGCCCCTGCGGCGGCAGTCCTTTTCAAAAAAGTGCGTCTGTCAGTCATCTTCATGGCAA CGTCTGTGGTTTATCCCCGC
Downstream 100 bases:
>100_bases CCTCCCCGCCGCCAGGCGTCCGGGAAAGACCTCAGGCCCGGCGTTCCTTCATCCACTCCACCACCTGTGCCAGAGCGCGG GCGCGGTGCGACATGGAATT
Product: rRNA methylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 235; Mature: 235
Protein sequence:
>235_residues MREHAEGFMPLPNTRPAKKQPVILPAPEFHKRIVIQARLLYNPVMKCSLLSRPMTCAHDWISRVVSPGDAVVDATAGNGH DTVFLARLVGTSGQVHAFDVQEEAIRATRERLEKEGLLTPSVQLHLASHDRLAELVGGPVKAIVFNLGYLPGGDKKTVTR TECTLAALEQAAALIAPNGLLSVMCYPGHEGGKEEAEAVEAFLSRLPHHSWRAGKYQLLNTGTPAPFQICAFRLD
Sequences:
>Translated_235_residues MREHAEGFMPLPNTRPAKKQPVILPAPEFHKRIVIQARLLYNPVMKCSLLSRPMTCAHDWISRVVSPGDAVVDATAGNGH DTVFLARLVGTSGQVHAFDVQEEAIRATRERLEKEGLLTPSVQLHLASHDRLAELVGGPVKAIVFNLGYLPGGDKKTVTR TECTLAALEQAAALIAPNGLLSVMCYPGHEGGKEEAEAVEAFLSRLPHHSWRAGKYQLLNTGTPAPFQICAFRLD >Mature_235_residues MREHAEGFMPLPNTRPAKKQPVILPAPEFHKRIVIQARLLYNPVMKCSLLSRPMTCAHDWISRVVSPGDAVVDATAGNGH DTVFLARLVGTSGQVHAFDVQEEAIRATRERLEKEGLLTPSVQLHLASHDRLAELVGGPVKAIVFNLGYLPGGDKKTVTR TECTLAALEQAAALIAPNGLLSVMCYPGHEGGKEEAEAVEAFLSRLPHHSWRAGKYQLLNTGTPAPFQICAFRLD
Specific function: Unknown
COG id: COG0500
COG function: function code QR; SAM-dependent methyltransferases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the methyltransferase superfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010719 [H]
Pfam domain/function: PF06962 rRNA_methylase [H]
EC number: NA
Molecular weight: Translated: 25612; Mature: 25612
Theoretical pI: Translated: 7.96; Mature: 7.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MREHAEGFMPLPNTRPAKKQPVILPAPEFHKRIVIQARLLYNPVMKCSLLSRPMTCAHDW CCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH ISRVVSPGDAVVDATAGNGHDTVFLARLVGTSGQVHAFDVQEEAIRATRERLEKEGLLTP HHHHCCCCCEEEEECCCCCCCCEEEEEECCCCCCEEEECCHHHHHHHHHHHHHHCCCCCC SVQLHLASHDRLAELVGGPVKAIVFNLGYLPGGDKKTVTRTECTLAALEQAAALIAPNGL CEEEEECCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCE LSVMCYPGHEGGKEEAEAVEAFLSRLPHHSWRAGKYQLLNTGTPAPFQICAFRLD EEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCEEEEEEECC >Mature Secondary Structure MREHAEGFMPLPNTRPAKKQPVILPAPEFHKRIVIQARLLYNPVMKCSLLSRPMTCAHDW CCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH ISRVVSPGDAVVDATAGNGHDTVFLARLVGTSGQVHAFDVQEEAIRATRERLEKEGLLTP HHHHCCCCCEEEEECCCCCCCCEEEEEECCCCCCEEEECCHHHHHHHHHHHHHHCCCCCC SVQLHLASHDRLAELVGGPVKAIVFNLGYLPGGDKKTVTRTECTLAALEQAAALIAPNGL CEEEEECCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCE LSVMCYPGHEGGKEEAEAVEAFLSRLPHHSWRAGKYQLLNTGTPAPFQICAFRLD EEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9387221; 9384377 [H]