Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735468
Identifier: 187735468
GI number: 187735468
Start: 1154023
End: 1154688
Strand: Reverse
Name: 187735468
Synonym: Amuc_0967
Alternate gene names: NA
Gene position: 1154688-1154023 (Counterclockwise)
Preceding gene: 187735472
Following gene: 187735461
Centisome position: 43.34
GC content: 58.11
Gene sequence:
>666_bases ATGTCACAACACAACACACAGGGAAGACAGGGCCAGGGAGCCCGCCGCCGCTACAACAAGGGCGGACGCTCCTATGGCAA TGACCGCCGCGATTCCAGCGGTTACCGTCCCAAGTACAGAAAAGAAGCGCCCGCCAAACTCTCCTTGTGGCAGCGTTTCC TGGGCCTCTTCGGCATTCGTCCGTCCAAGAATAACAAGCATGCGGCCAGGGATAAAGCCGCCGCCAAAACCAACACCCGC GTAGCCCGCAACAGGCAAGATCGCGTTTCCGCACCCAAACAGCCCGTCTCCAACCGCCGGCTTTATGTGGGCAATCTTTC CTATGAAGCTACGGAAAGCGACCTGGAGGACGTGTTCAAGGGCATCGGGGAAGTCAATTCCGTGGAAATCATTTACAACC CCCGCACCCACAAGTCCAAGGGGTATGCTTTTGTGGAAATGAAGAAGATGGAAGACGCCATCCGTTCCGTGGACATTCTC CACAACCAGCCTTTCATGGGCCGCAATCTGCTGGTCAGCGGAGCCAATGAACGCCAGGAACAACCCCGGCAGCCCCGCGA AGACCGCGCGCCCAGGGAAGAACAGGATTCCATGGCGGAAGTGAAAGAAACCTCCACTCCCCTGCTCCAGCCGGAAGCTC CCGCTCCCCAGTCCCAGGAACAATAA
Upstream 100 bases:
>100_bases TGGCAGCGGAACGTCCCGGCGATCCTCCGGATGGAATTTACTGCACACAGCGATAAATCCGGCATGACACCAACATAATC ACCAACTTAGCATTATAAGT
Downstream 100 bases:
>100_bases CCGTTTTACCATGCGGAAGCCGGCCTTTCTTCAAAGGCCGGCTTCCTGCATTTACGGAAAAGGGAACTCCAGGCAGCAAC GAACGTGCAGCACGGCACGG
Product: RNP-1 like RNA-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 221; Mature: 220
Protein sequence:
>221_residues MSQHNTQGRQGQGARRRYNKGGRSYGNDRRDSSGYRPKYRKEAPAKLSLWQRFLGLFGIRPSKNNKHAARDKAAAKTNTR VARNRQDRVSAPKQPVSNRRLYVGNLSYEATESDLEDVFKGIGEVNSVEIIYNPRTHKSKGYAFVEMKKMEDAIRSVDIL HNQPFMGRNLLVSGANERQEQPRQPREDRAPREEQDSMAEVKETSTPLLQPEAPAPQSQEQ
Sequences:
>Translated_221_residues MSQHNTQGRQGQGARRRYNKGGRSYGNDRRDSSGYRPKYRKEAPAKLSLWQRFLGLFGIRPSKNNKHAARDKAAAKTNTR VARNRQDRVSAPKQPVSNRRLYVGNLSYEATESDLEDVFKGIGEVNSVEIIYNPRTHKSKGYAFVEMKKMEDAIRSVDIL HNQPFMGRNLLVSGANERQEQPRQPREDRAPREEQDSMAEVKETSTPLLQPEAPAPQSQEQ >Mature_220_residues SQHNTQGRQGQGARRRYNKGGRSYGNDRRDSSGYRPKYRKEAPAKLSLWQRFLGLFGIRPSKNNKHAARDKAAAKTNTRV ARNRQDRVSAPKQPVSNRRLYVGNLSYEATESDLEDVFKGIGEVNSVEIIYNPRTHKSKGYAFVEMKKMEDAIRSVDILH NQPFMGRNLLVSGANERQEQPRQPREDRAPREEQDSMAEVKETSTPLLQPEAPAPQSQEQ
Specific function: Unknown
COG id: COG0724
COG function: function code R; RNA-binding proteins (RRM domain)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI4557493, Length=79, Percent_Identity=41.7721518987342, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI14149675, Length=79, Percent_Identity=41.7721518987342, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17508567, Length=76, Percent_Identity=42.1052631578947, Blast_Score=66, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25237; Mature: 25106
Theoretical pI: Translated: 10.67; Mature: 10.67
Prosite motif: PS50102 RRM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQHNTQGRQGQGARRRYNKGGRSYGNDRRDSSGYRPKYRKEAPAKLSLWQRFLGLFGIR CCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHCCC PSKNNKHAARDKAAAKTNTRVARNRQDRVSAPKQPVSNRRLYVGNLSYEATESDLEDVFK CCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHH GIGEVNSVEIIYNPRTHKSKGYAFVEMKKMEDAIRSVDILHNQPFMGRNLLVSGANERQE HHCCCCCEEEEECCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHH QPRQPREDRAPREEQDSMAEVKETSTPLLQPEAPAPQSQEQ CCCCCCHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure SQHNTQGRQGQGARRRYNKGGRSYGNDRRDSSGYRPKYRKEAPAKLSLWQRFLGLFGIR CCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHCCC PSKNNKHAARDKAAAKTNTRVARNRQDRVSAPKQPVSNRRLYVGNLSYEATESDLEDVFK CCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHH GIGEVNSVEIIYNPRTHKSKGYAFVEMKKMEDAIRSVDILHNQPFMGRNLLVSGANERQE HHCCCCCEEEEECCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHH QPRQPREDRAPREEQDSMAEVKETSTPLLQPEAPAPQSQEQ CCCCCCHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA