Definition Akkermansia muciniphila ATCC BAA-835, complete genome.
Accession NC_010655
Length 2,664,102

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The map label for this gene is 187735468

Identifier: 187735468

GI number: 187735468

Start: 1154023

End: 1154688

Strand: Reverse

Name: 187735468

Synonym: Amuc_0967

Alternate gene names: NA

Gene position: 1154688-1154023 (Counterclockwise)

Preceding gene: 187735472

Following gene: 187735461

Centisome position: 43.34

GC content: 58.11

Gene sequence:

>666_bases
ATGTCACAACACAACACACAGGGAAGACAGGGCCAGGGAGCCCGCCGCCGCTACAACAAGGGCGGACGCTCCTATGGCAA
TGACCGCCGCGATTCCAGCGGTTACCGTCCCAAGTACAGAAAAGAAGCGCCCGCCAAACTCTCCTTGTGGCAGCGTTTCC
TGGGCCTCTTCGGCATTCGTCCGTCCAAGAATAACAAGCATGCGGCCAGGGATAAAGCCGCCGCCAAAACCAACACCCGC
GTAGCCCGCAACAGGCAAGATCGCGTTTCCGCACCCAAACAGCCCGTCTCCAACCGCCGGCTTTATGTGGGCAATCTTTC
CTATGAAGCTACGGAAAGCGACCTGGAGGACGTGTTCAAGGGCATCGGGGAAGTCAATTCCGTGGAAATCATTTACAACC
CCCGCACCCACAAGTCCAAGGGGTATGCTTTTGTGGAAATGAAGAAGATGGAAGACGCCATCCGTTCCGTGGACATTCTC
CACAACCAGCCTTTCATGGGCCGCAATCTGCTGGTCAGCGGAGCCAATGAACGCCAGGAACAACCCCGGCAGCCCCGCGA
AGACCGCGCGCCCAGGGAAGAACAGGATTCCATGGCGGAAGTGAAAGAAACCTCCACTCCCCTGCTCCAGCCGGAAGCTC
CCGCTCCCCAGTCCCAGGAACAATAA

Upstream 100 bases:

>100_bases
TGGCAGCGGAACGTCCCGGCGATCCTCCGGATGGAATTTACTGCACACAGCGATAAATCCGGCATGACACCAACATAATC
ACCAACTTAGCATTATAAGT

Downstream 100 bases:

>100_bases
CCGTTTTACCATGCGGAAGCCGGCCTTTCTTCAAAGGCCGGCTTCCTGCATTTACGGAAAAGGGAACTCCAGGCAGCAAC
GAACGTGCAGCACGGCACGG

Product: RNP-1 like RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MSQHNTQGRQGQGARRRYNKGGRSYGNDRRDSSGYRPKYRKEAPAKLSLWQRFLGLFGIRPSKNNKHAARDKAAAKTNTR
VARNRQDRVSAPKQPVSNRRLYVGNLSYEATESDLEDVFKGIGEVNSVEIIYNPRTHKSKGYAFVEMKKMEDAIRSVDIL
HNQPFMGRNLLVSGANERQEQPRQPREDRAPREEQDSMAEVKETSTPLLQPEAPAPQSQEQ

Sequences:

>Translated_221_residues
MSQHNTQGRQGQGARRRYNKGGRSYGNDRRDSSGYRPKYRKEAPAKLSLWQRFLGLFGIRPSKNNKHAARDKAAAKTNTR
VARNRQDRVSAPKQPVSNRRLYVGNLSYEATESDLEDVFKGIGEVNSVEIIYNPRTHKSKGYAFVEMKKMEDAIRSVDIL
HNQPFMGRNLLVSGANERQEQPRQPREDRAPREEQDSMAEVKETSTPLLQPEAPAPQSQEQ
>Mature_220_residues
SQHNTQGRQGQGARRRYNKGGRSYGNDRRDSSGYRPKYRKEAPAKLSLWQRFLGLFGIRPSKNNKHAARDKAAAKTNTRV
ARNRQDRVSAPKQPVSNRRLYVGNLSYEATESDLEDVFKGIGEVNSVEIIYNPRTHKSKGYAFVEMKKMEDAIRSVDILH
NQPFMGRNLLVSGANERQEQPRQPREDRAPREEQDSMAEVKETSTPLLQPEAPAPQSQEQ

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI4557493, Length=79, Percent_Identity=41.7721518987342, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI14149675, Length=79, Percent_Identity=41.7721518987342, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17508567, Length=76, Percent_Identity=42.1052631578947, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25237; Mature: 25106

Theoretical pI: Translated: 10.67; Mature: 10.67

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQHNTQGRQGQGARRRYNKGGRSYGNDRRDSSGYRPKYRKEAPAKLSLWQRFLGLFGIR
CCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHCCC
PSKNNKHAARDKAAAKTNTRVARNRQDRVSAPKQPVSNRRLYVGNLSYEATESDLEDVFK
CCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHH
GIGEVNSVEIIYNPRTHKSKGYAFVEMKKMEDAIRSVDILHNQPFMGRNLLVSGANERQE
HHCCCCCEEEEECCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHH
QPRQPREDRAPREEQDSMAEVKETSTPLLQPEAPAPQSQEQ
CCCCCCHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SQHNTQGRQGQGARRRYNKGGRSYGNDRRDSSGYRPKYRKEAPAKLSLWQRFLGLFGIR
CCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHCCC
PSKNNKHAARDKAAAKTNTRVARNRQDRVSAPKQPVSNRRLYVGNLSYEATESDLEDVFK
CCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHH
GIGEVNSVEIIYNPRTHKSKGYAFVEMKKMEDAIRSVDILHNQPFMGRNLLVSGANERQE
HHCCCCCEEEEECCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHH
QPRQPREDRAPREEQDSMAEVKETSTPLLQPEAPAPQSQEQ
CCCCCCHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA