Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is epsJ [H]
Identifier: 187735446
GI number: 187735446
Start: 1125947
End: 1127023
Strand: Direct
Name: epsJ [H]
Synonym: Amuc_0945
Alternate gene names: 187735446
Gene position: 1125947-1127023 (Clockwise)
Preceding gene: 187735439
Following gene: 187735453
Centisome position: 42.26
GC content: 59.15
Gene sequence:
>1077_bases ATGAGCGTATCCGTTTCCATCATTGTTCCCTGTTATAATGTTGCCGCTTATTTGGACCAGTGTATGGAAAGCCTGGCCGG CCAGAGCATGGAAGATATCGAAATCATTTGCGTCAATGACGGTTCTTCCGACCGTACGGCGGAGATATTGCGCGAATGGC GGGACAGGGACGGCCGCGTCCGGGTAATTGACCGGAAAAACAGCGGTGTTTCCGCGGCGAGGAACAGCGGCATGGAAGCG GCTGCGGGAAAGTATATCGGCTTTGTGGACCCGGACGACGTGGTGGAGCGGAATATGTTCCGGCGCCTGTTTGATGCGGC CGTGGAAAAAGATGCGGACGTAGCGGTGTGCGGATACCATGAGTTCTGCGACCGCGGAGGCATGGATATGCCTGAAAGCG GCTGGTCGCCGTCAGCCGGGTTTTTCCCGGAAGAAAAAGCGGAGCGGTTCCGGCGGGGGACGCCCTGGAGCCGGTGCGCG GGAACGGTGTGGAATAAGCTGATCCGCAGGGAGCTGCTGGAAGAAAACGGTGTGCGTTTCGTTCCCGGATTGCGCCAGGG GGAGGATTTGTATTTCTGTCTGATGCTGTTGACTGTTGCTCCGCGGCTCCTGATCCTTCCCGACCGTTTGTACCATTACC GGAGGGAACGCCCCGGTTCCGCCTCCTGCGGGCGGGATCCCCGCCTGGGGGATTTCCGCATGGATTTGATGGGCATGGAA TCTCTGGCGCGTTTCTGGGGGGAGCGGGGGCTCCTTGATTCTCCCGCCGCCTTCGGTCTGGTGGACTACTGCATGGAGTT GATGCGCAGGCATTTCATCATGAAAGAGGGAGCTTTTTTCAAAGCGTCTCCGGAAGACCGGGAAGTTCTGCTTTCCGGCT GGAAAAAGTGGCTGGAGCTGGTGGGCGCGGAGAACGTCCTTCCCCGTCTGGACCGGTGGGACCGGGCTTTTTGCCGCCTT CTGCTGGATTGCCCCCTGCGGAGCAATTTTTTCTCTGCCCTGCATTCCCGCCTGATGTCGTCCCGCAAGGGGCGCCGGGG GGCTTACTATACCCTGAAAAGGCACCTGATGAAGTGA
Upstream 100 bases:
>100_bases AATAGTTTCCCTCTTCCGGGTGTTCCGTTTTTCAACAGATGGCGTTGCTGTTTTTTCTTGATGTGAATTTTCAATCCGGA TAAAAAAGGATGCTTCCGCC
Downstream 100 bases:
>100_bases AAAGGGGAAATTTTCTCCCCCCTTTCCCTGCTGTTCCGGCGCCGCATGGGGCTGCGGAAAGGCGGAATGCCTGCCGGCAT CCTACAGGCCCGTGTAGCAC
Product: glycosyl transferase family 2
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 358; Mature: 357
Protein sequence:
>358_residues MSVSVSIIVPCYNVAAYLDQCMESLAGQSMEDIEIICVNDGSSDRTAEILREWRDRDGRVRVIDRKNSGVSAARNSGMEA AAGKYIGFVDPDDVVERNMFRRLFDAAVEKDADVAVCGYHEFCDRGGMDMPESGWSPSAGFFPEEKAERFRRGTPWSRCA GTVWNKLIRRELLEENGVRFVPGLRQGEDLYFCLMLLTVAPRLLILPDRLYHYRRERPGSASCGRDPRLGDFRMDLMGME SLARFWGERGLLDSPAAFGLVDYCMELMRRHFIMKEGAFFKASPEDREVLLSGWKKWLELVGAENVLPRLDRWDRAFCRL LLDCPLRSNFFSALHSRLMSSRKGRRGAYYTLKRHLMK
Sequences:
>Translated_358_residues MSVSVSIIVPCYNVAAYLDQCMESLAGQSMEDIEIICVNDGSSDRTAEILREWRDRDGRVRVIDRKNSGVSAARNSGMEA AAGKYIGFVDPDDVVERNMFRRLFDAAVEKDADVAVCGYHEFCDRGGMDMPESGWSPSAGFFPEEKAERFRRGTPWSRCA GTVWNKLIRRELLEENGVRFVPGLRQGEDLYFCLMLLTVAPRLLILPDRLYHYRRERPGSASCGRDPRLGDFRMDLMGME SLARFWGERGLLDSPAAFGLVDYCMELMRRHFIMKEGAFFKASPEDREVLLSGWKKWLELVGAENVLPRLDRWDRAFCRL LLDCPLRSNFFSALHSRLMSSRKGRRGAYYTLKRHLMK >Mature_357_residues SVSVSIIVPCYNVAAYLDQCMESLAGQSMEDIEIICVNDGSSDRTAEILREWRDRDGRVRVIDRKNSGVSAARNSGMEAA AGKYIGFVDPDDVVERNMFRRLFDAAVEKDADVAVCGYHEFCDRGGMDMPESGWSPSAGFFPEEKAERFRRGTPWSRCAG TVWNKLIRRELLEENGVRFVPGLRQGEDLYFCLMLLTVAPRLLILPDRLYHYRRERPGSASCGRDPRLGDFRMDLMGMES LARFWGERGLLDSPAAFGLVDYCMELMRRHFIMKEGAFFKASPEDREVLLSGWKKWLELVGAENVLPRLDRWDRAFCRLL LDCPLRSNFFSALHSRLMSSRKGRRGAYYTLKRHLMK
Specific function: May be involved in the production of the exopolysaccharide (EPS) component of the extracellular matrix during biofilm formation. EPS is responsible for the adhesion of chains of cells into bundles [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 2 family [H]
Homologues:
Organism=Homo sapiens, GI57770468, Length=125, Percent_Identity=32.8, Blast_Score=73, Evalue=5e-13, Organism=Escherichia coli, GI1790044, Length=234, Percent_Identity=32.4786324786325, Blast_Score=121, Evalue=9e-29, Organism=Escherichia coli, GI1787259, Length=96, Percent_Identity=35.4166666666667, Blast_Score=67, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: 2.-.-.- [C]
Molecular weight: Translated: 41049; Mature: 40918
Theoretical pI: Translated: 8.04; Mature: 8.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 7.5 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 7.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVSVSIIVPCYNVAAYLDQCMESLAGQSMEDIEIICVNDGSSDRTAEILREWRDRDGRV CCEEEEEEEHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCE RVIDRKNSGVSAARNSGMEAAAGKYIGFVDPDDVVERNMFRRLFDAAVEKDADVAVCGYH EEEECCCCCCHHHHHCCCHHHCCCEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCH EFCDRGGMDMPESGWSPSAGFFPEEKAERFRRGTPWSRCAGTVWNKLIRRELLEENGVRF HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEE VPGLRQGEDLYFCLMLLTVAPRLLILPDRLYHYRRERPGSASCGRDPRLGDFRMDLMGME CCCCCCCCHHHHHHHHHHHCCHHEECCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH SLARFWGERGLLDSPAAFGLVDYCMELMRRHFIMKEGAFFKASPEDREVLLSGWKKWLEL HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH VGAENVLPRLDRWDRAFCRLLLDCPLRSNFFSALHSRLMSSRKGRRGAYYTLKRHLMK HCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC >Mature Secondary Structure SVSVSIIVPCYNVAAYLDQCMESLAGQSMEDIEIICVNDGSSDRTAEILREWRDRDGRV CEEEEEEEHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCE RVIDRKNSGVSAARNSGMEAAAGKYIGFVDPDDVVERNMFRRLFDAAVEKDADVAVCGYH EEEECCCCCCHHHHHCCCHHHCCCEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCH EFCDRGGMDMPESGWSPSAGFFPEEKAERFRRGTPWSRCAGTVWNKLIRRELLEENGVRF HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEE VPGLRQGEDLYFCLMLLTVAPRLLILPDRLYHYRRERPGSASCGRDPRLGDFRMDLMGME CCCCCCCCHHHHHHHHHHHCCHHEECCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH SLARFWGERGLLDSPAAFGLVDYCMELMRRHFIMKEGAFFKASPEDREVLLSGWKKWLEL HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH VGAENVLPRLDRWDRAFCRLLLDCPLRSNFFSALHSRLMSSRKGRRGAYYTLKRHLMK HCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8969506; 9384377 [H]