Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is epsJ [H]
Identifier: 187735444
GI number: 187735444
Start: 1123289
End: 1124344
Strand: Reverse
Name: epsJ [H]
Synonym: Amuc_0943
Alternate gene names: 187735444
Gene position: 1124344-1123289 (Counterclockwise)
Preceding gene: 187735445
Following gene: 187735443
Centisome position: 42.2
GC content: 56.34
Gene sequence:
>1056_bases ATGACCCGAACCCGCCCGCCACAGCCCCAGGTTTCCGTCATCGTTCCCGTTTACAATCAGGAACAATATCTTGAAGAGTG CATCAGCAGCATCCGCCGGCAAACCCTTGCGGAGTGGGAATGCATCATCGTCAACGACGGGTCCTCCGACTCGTCAGGGG AAATCGCCCGGCGCTTTTCAGAGGAGGACTCAAGAATCCTCTGCCTCGAACAGGAAAACAGGGGCGTTTCCTCCGCCCGC AATCTGGGCATGCGGCACGCTTCCGGGCGCTATTTGTGTTTTGTTGACGGTGACGATTTCATCGACGCGGCCTTTCTCAA ACATCTTCTGGACGCCTCGGACCGCGGAGCAAGCGATTTGACCGTAGCGGGAAAGCTGTTCTGCGACAGGTTTCCGCTGG ACAAAATCCCCGCCCTCCCCACCTGCGGCATATTTCTGCGCCGGGAGTTCCCCTTGAAAAACAATCTGGAATTCCCGGAA GGCATTCACCCCTGTGAGGACGGCCTCTTCTCGCATTTCGTGCTCGCGCTGACAGAAAAAATTTCCTTCTGTCCGGAGGC CGTTTACCATTACCGCCAGCATGAACAGGGCAACCACCACCAGATACGGAAAAGAACCGCCGACATCCTGCCCATGATCC CCCGGTGGCTTTCCCTGATTGAAGAGTTTTATGAACAACGCCATCTCTGGAAAAGAAAAGCCGGCCATCTCGTCCGCTTT ATTGAGCATGAACCATTTGAACTGAGGCTGCTTGGCATGCCTTTCTCCCCGCCGGAGCAGGAAATACTTTACAGCATCAT CCGGGACTTCCTGAACGCCCATTGCACGGCCGCCGAGTGCCGGAGGGCCTCCCTGCATCTTCCTTTCCGCCTGTTGTTGC AATCCTCCGGCTTTTCAGACTTCGGAAGAAGGCTCCGGAGGGCCGGCAAAAACACCGGAATCCGCCGGAAGCTCCTCCAT TTCTGCCCTGTCCCCTCATGGAGGAGGAATGGCAGGGCACAGCTGCGGCAAGTACGCGAACAGCTGGAGGAAATACGCAG GAATATCACGTTTTAA
Upstream 100 bases:
>100_bases CGCTTCTCCAACTGGGCAGGGATATTGACGGGGAATCCCGTTCCAATCTGGAGCGGGCCCTTGCCGCATGCTCCCCCTCC GAACCTCAACAGGCCCGCTC
Downstream 100 bases:
>100_bases CCCCTTCCCCTGCTTGAACATGGCAAAAGGAAAAATAATAGTCATGCGTCTTTTCGGAGGGCTGGGAAACCAGCTGTTCC AATACGCCTTCCTCTTCGCG
Product: glycosyl transferase family 2
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 351; Mature: 350
Protein sequence:
>351_residues MTRTRPPQPQVSVIVPVYNQEQYLEECISSIRRQTLAEWECIIVNDGSSDSSGEIARRFSEEDSRILCLEQENRGVSSAR NLGMRHASGRYLCFVDGDDFIDAAFLKHLLDASDRGASDLTVAGKLFCDRFPLDKIPALPTCGIFLRREFPLKNNLEFPE GIHPCEDGLFSHFVLALTEKISFCPEAVYHYRQHEQGNHHQIRKRTADILPMIPRWLSLIEEFYEQRHLWKRKAGHLVRF IEHEPFELRLLGMPFSPPEQEILYSIIRDFLNAHCTAAECRRASLHLPFRLLLQSSGFSDFGRRLRRAGKNTGIRRKLLH FCPVPSWRRNGRAQLRQVREQLEEIRRNITF
Sequences:
>Translated_351_residues MTRTRPPQPQVSVIVPVYNQEQYLEECISSIRRQTLAEWECIIVNDGSSDSSGEIARRFSEEDSRILCLEQENRGVSSAR NLGMRHASGRYLCFVDGDDFIDAAFLKHLLDASDRGASDLTVAGKLFCDRFPLDKIPALPTCGIFLRREFPLKNNLEFPE GIHPCEDGLFSHFVLALTEKISFCPEAVYHYRQHEQGNHHQIRKRTADILPMIPRWLSLIEEFYEQRHLWKRKAGHLVRF IEHEPFELRLLGMPFSPPEQEILYSIIRDFLNAHCTAAECRRASLHLPFRLLLQSSGFSDFGRRLRRAGKNTGIRRKLLH FCPVPSWRRNGRAQLRQVREQLEEIRRNITF >Mature_350_residues TRTRPPQPQVSVIVPVYNQEQYLEECISSIRRQTLAEWECIIVNDGSSDSSGEIARRFSEEDSRILCLEQENRGVSSARN LGMRHASGRYLCFVDGDDFIDAAFLKHLLDASDRGASDLTVAGKLFCDRFPLDKIPALPTCGIFLRREFPLKNNLEFPEG IHPCEDGLFSHFVLALTEKISFCPEAVYHYRQHEQGNHHQIRKRTADILPMIPRWLSLIEEFYEQRHLWKRKAGHLVRFI EHEPFELRLLGMPFSPPEQEILYSIIRDFLNAHCTAAECRRASLHLPFRLLLQSSGFSDFGRRLRRAGKNTGIRRKLLHF CPVPSWRRNGRAQLRQVREQLEEIRRNITF
Specific function: May be involved in the production of the exopolysaccharide (EPS) component of the extracellular matrix during biofilm formation. EPS is responsible for the adhesion of chains of cells into bundles [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 2 family [H]
Homologues:
Organism=Homo sapiens, GI57770468, Length=102, Percent_Identity=38.2352941176471, Blast_Score=68, Evalue=1e-11, Organism=Escherichia coli, GI1790044, Length=226, Percent_Identity=27.8761061946903, Blast_Score=98, Evalue=1e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: 2.-.-.- [C]
Molecular weight: Translated: 40868; Mature: 40737
Theoretical pI: Translated: 8.37; Mature: 8.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRTRPPQPQVSVIVPVYNQEQYLEECISSIRRQTLAEWECIIVNDGSSDSSGEIARRFS CCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHC EEDSRILCLEQENRGVSSARNLGMRHASGRYLCFVDGDDFIDAAFLKHLLDASDRGASDL CCCCEEEEEECCCCCHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCH TVAGKLFCDRFPLDKIPALPTCGIFLRREFPLKNNLEFPEGIHPCEDGLFSHFVLALTEK HHHHHHHHCCCCCCCCCCCCCCCHHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH ISFCPEAVYHYRQHEQGNHHQIRKRTADILPMIPRWLSLIEEFYEQRHLWKRKAGHLVRF HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IEHEPFELRLLGMPFSPPEQEILYSIIRDFLNAHCTAAECRRASLHLPFRLLLQSSGFSD HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHCCCCHH FGRRLRRAGKNTGIRRKLLHFCPVPSWRRNGRAQLRQVREQLEEIRRNITF HHHHHHHCCCCCCHHHHHHHHCCCCCHHCCCHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TRTRPPQPQVSVIVPVYNQEQYLEECISSIRRQTLAEWECIIVNDGSSDSSGEIARRFS CCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHC EEDSRILCLEQENRGVSSARNLGMRHASGRYLCFVDGDDFIDAAFLKHLLDASDRGASDL CCCCEEEEEECCCCCHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCH TVAGKLFCDRFPLDKIPALPTCGIFLRREFPLKNNLEFPEGIHPCEDGLFSHFVLALTEK HHHHHHHHCCCCCCCCCCCCCCCHHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH ISFCPEAVYHYRQHEQGNHHQIRKRTADILPMIPRWLSLIEEFYEQRHLWKRKAGHLVRF HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IEHEPFELRLLGMPFSPPEQEILYSIIRDFLNAHCTAAECRRASLHLPFRLLLQSSGFSD HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHCCCCHH FGRRLRRAGKNTGIRRKLLHFCPVPSWRRNGRAQLRQVREQLEEIRRNITF HHHHHHHCCCCCCHHHHHHHHCCCCCHHCCCHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8969506; 9384377 [H]