Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is 187735445
Identifier: 187735445
GI number: 187735445
Start: 1124341
End: 1125540
Strand: Reverse
Name: 187735445
Synonym: Amuc_0944
Alternate gene names: NA
Gene position: 1125540-1124341 (Counterclockwise)
Preceding gene: 187735447
Following gene: 187735444
Centisome position: 42.25
GC content: 57.75
Gene sequence:
>1200_bases ATGACACATACGCAGACAGTCATGCTCCGATTGCTGACCATGTGTATTCCGTTTCGGAACCTGCGTAAAAAATGGCGCAC TTTCCTGCGCGATTTTCTGTCCGACTATGACCGGGACGCCCGCCGAAGCATGCGCGCATGGCGCAGGCATCCAGTGGCCG GCCGTACCATCCTTATTCTGGAACCCAACTATTGCCACGGGGAAGTCATCCCCGGTTTCTGCCGCCACCTGCTCGACATG GGATACCGCGTTGATGTCCTGATGCATCACAGCCTGGCCAGGCAATCCCCCCTGTGTTGTTTCAAGGAAGGCGATATCCA TATTTTCACGGCCATGTGCACTTCATGGAAGCGCCTGGCCAAAGCGCGCGTCCTCACCCGGTACGAAGCCATCCTGGTAT CAACATCCGCCTTTTATGACATTCCGGGTTGGGCAAGTTTCCTTCACATGACGGGGCTTGACAAATTCGCCAATCTTCTG GCCGTCGAACATGAATTAAAGGACATCCCCCGGTTCGGGGAAGAAGAACTTGACCGCCAGGGACGGCTGCTGACGCTGGG CTCCTTTCCCAGGGGCATGATGGTTAATCCGCACTTTTTCGGGGAAATCCCGCCTGCGCCCCGGAACCGCGAACCCGTGT TCATCACCGTAGGGTCCCTCTCCGCACAGCGGAAAAACCACGAACTCCTGGTTGAGGCGCTGGAAACCGTCTGCAATGAA GGGTACAGGAACTTTTCCGTCATCATCGTGGGGGAAGGAGAGCTGGGAAAAATCCCCGGCCATCTGCGCCCCTTCCTGCA TGTGGCCGGAAAGCTCGACTTCCCCGCCATGTACGAGGCCATGAGGCGGGCGGACTATTTCCTGCCCCTGCTTGATCCCG GCAATCCGGCGCATAACCGCTACATTACCACCGGCGTCACCGGTTCCGCCCAGCTTGTTTACGGATTCGCGAAAATCCCG GTCATCCATGAGAAATTCGCTTCCTTCTACGGCTTCAACGACAGGAACGCACTCCTTTACAGGGAAGAAACGCTTGGCGG CGCCATGCTCCGCGCCATCAGGCAAACGGAAGAGGAATACGCAGGAATGCAGCAGGCGCTTCTCCAACTGGGCAGGGATA TTGACGGGGAATCCCGTTCCAATCTGGAGCGGGCCCTTGCCGCATGCTCCCCCTCCGAACCTCAACAGGCCCGCTCATGA
Upstream 100 bases:
>100_bases CCGGCGGGGGAAAAACCGCCCGGAACGGTAACAAGGGCCATTCATCATCCGCGTCAGGCGATATTCATTATATTTCCTGC AATTTTTCACCATGAAACCA
Downstream 100 bases:
>100_bases CCCGAACCCGCCCGCCACAGCCCCAGGTTTCCGTCATCGTTCCCGTTTACAATCAGGAACAATATCTTGAAGAGTGCATC AGCAGCATCCGCCGGCAAAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 399; Mature: 398
Protein sequence:
>399_residues MTHTQTVMLRLLTMCIPFRNLRKKWRTFLRDFLSDYDRDARRSMRAWRRHPVAGRTILILEPNYCHGEVIPGFCRHLLDM GYRVDVLMHHSLARQSPLCCFKEGDIHIFTAMCTSWKRLAKARVLTRYEAILVSTSAFYDIPGWASFLHMTGLDKFANLL AVEHELKDIPRFGEEELDRQGRLLTLGSFPRGMMVNPHFFGEIPPAPRNREPVFITVGSLSAQRKNHELLVEALETVCNE GYRNFSVIIVGEGELGKIPGHLRPFLHVAGKLDFPAMYEAMRRADYFLPLLDPGNPAHNRYITTGVTGSAQLVYGFAKIP VIHEKFASFYGFNDRNALLYREETLGGAMLRAIRQTEEEYAGMQQALLQLGRDIDGESRSNLERALAACSPSEPQQARS
Sequences:
>Translated_399_residues MTHTQTVMLRLLTMCIPFRNLRKKWRTFLRDFLSDYDRDARRSMRAWRRHPVAGRTILILEPNYCHGEVIPGFCRHLLDM GYRVDVLMHHSLARQSPLCCFKEGDIHIFTAMCTSWKRLAKARVLTRYEAILVSTSAFYDIPGWASFLHMTGLDKFANLL AVEHELKDIPRFGEEELDRQGRLLTLGSFPRGMMVNPHFFGEIPPAPRNREPVFITVGSLSAQRKNHELLVEALETVCNE GYRNFSVIIVGEGELGKIPGHLRPFLHVAGKLDFPAMYEAMRRADYFLPLLDPGNPAHNRYITTGVTGSAQLVYGFAKIP VIHEKFASFYGFNDRNALLYREETLGGAMLRAIRQTEEEYAGMQQALLQLGRDIDGESRSNLERALAACSPSEPQQARS >Mature_398_residues THTQTVMLRLLTMCIPFRNLRKKWRTFLRDFLSDYDRDARRSMRAWRRHPVAGRTILILEPNYCHGEVIPGFCRHLLDMG YRVDVLMHHSLARQSPLCCFKEGDIHIFTAMCTSWKRLAKARVLTRYEAILVSTSAFYDIPGWASFLHMTGLDKFANLLA VEHELKDIPRFGEEELDRQGRLLTLGSFPRGMMVNPHFFGEIPPAPRNREPVFITVGSLSAQRKNHELLVEALETVCNEG YRNFSVIIVGEGELGKIPGHLRPFLHVAGKLDFPAMYEAMRRADYFLPLLDPGNPAHNRYITTGVTGSAQLVYGFAKIPV IHEKFASFYGFNDRNALLYREETLGGAMLRAIRQTEEEYAGMQQALLQLGRDIDGESRSNLERALAACSPSEPQQARS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45530; Mature: 45399
Theoretical pI: Translated: 8.71; Mature: 8.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTHTQTVMLRLLTMCIPFRNLRKKWRTFLRDFLSDYDRDARRSMRAWRRHPVAGRTILIL CCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEEEE EPNYCHGEVIPGFCRHLLDMGYRVDVLMHHSLARQSPLCCFKEGDIHIFTAMCTSWKRLA CCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEECCCEEEEHHHHHHHHHHH KARVLTRYEAILVSTSAFYDIPGWASFLHMTGLDKFANLLAVEHELKDIPRFGEEELDRQ HHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCC GRLLTLGSFPRGMMVNPHFFGEIPPAPRNREPVFITVGSLSAQRKNHELLVEALETVCNE CCEEEECCCCCCCEECCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHC GYRNFSVIIVGEGELGKIPGHLRPFLHVAGKLDFPAMYEAMRRADYFLPLLDPGNPAHNR CCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEECCCCCCCCC YITTGVTGSAQLVYGFAKIPVIHEKFASFYGFNDRNALLYREETLGGAMLRAIRQTEEEY EEEECCCCCHHHEEHHHHCCHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHH AGMQQALLQLGRDIDGESRSNLERALAACSPSEPQQARS HHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHCCC >Mature Secondary Structure THTQTVMLRLLTMCIPFRNLRKKWRTFLRDFLSDYDRDARRSMRAWRRHPVAGRTILIL CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEEEE EPNYCHGEVIPGFCRHLLDMGYRVDVLMHHSLARQSPLCCFKEGDIHIFTAMCTSWKRLA CCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEECCCEEEEHHHHHHHHHHH KARVLTRYEAILVSTSAFYDIPGWASFLHMTGLDKFANLLAVEHELKDIPRFGEEELDRQ HHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCC GRLLTLGSFPRGMMVNPHFFGEIPPAPRNREPVFITVGSLSAQRKNHELLVEALETVCNE CCEEEECCCCCCCEECCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHC GYRNFSVIIVGEGELGKIPGHLRPFLHVAGKLDFPAMYEAMRRADYFLPLLDPGNPAHNR CCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEECCCCCCCCC YITTGVTGSAQLVYGFAKIPVIHEKFASFYGFNDRNALLYREETLGGAMLRAIRQTEEEY EEEECCCCCHHHEEHHHHCCHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHH AGMQQALLQLGRDIDGESRSNLERALAACSPSEPQQARS HHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA