Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735441
Identifier: 187735441
GI number: 187735441
Start: 1119855
End: 1121204
Strand: Reverse
Name: 187735441
Synonym: Amuc_0940
Alternate gene names: NA
Gene position: 1121204-1119855 (Counterclockwise)
Preceding gene: 187735442
Following gene: 187735440
Centisome position: 42.09
GC content: 58.0
Gene sequence:
>1350_bases GTGTTCATCTATTCCTACCAGCAACACGACCACCTCCTGCCCGGCAATGACAGAATGCTGGTGATCGGCAGTTCCGCTCT GGCAAAAAACCATGGCCATCTGAAATCGTCCCGACTGGCCGCCGACACGCTCATCTTCAATTTCCCGCTCAACCATCCCC GCCTGTGGCGGCAAATGGAGCACAGCCTTTCCGGCGCCCGCTACAGCATCATTCTTTTCATGTGGCCGCCCCTGCATCTT TCCCCGGCCAACGGCAGGCTCATGGAAAAGCCCCCAGAAGGGGGCGGGCCCACGGAAAGCGCCGAAGATATGCTTTGCAG GCTTTTCGCCTTTCTGCGGAAACAGACGCGCCGCCTGATCCTCCTGTCATCCCCGCCCTCCGACTACGGCAGCGCCCGGC ACCCCTACGCGGAAGAACCGGGCGTCCTTGAAGCCTGGAACGCCCTTCTTCGCACGCTGGCAGGCAAGCTGAACCTTCCA TTCATTGACTTTTGCGGCGATATGCTGCAATACCGCCCCCTGCCCGGCTCCGGGGAAGAAGATTTCCCGGAAGCTTACCG GAATCTGGGGAAACAGGTCCTCCACCGGCTGCCTTTCGGCCAAACGTGGGTGAGAAGGCGTTCCGGGAAAATACACCGCC TGCTGGAGAAAAGAAGAAAACGCCGGAAAGAACGCATGCTTGCCCGATGGAGGACATTGGCGGCCCCTCCCCATTACCGT GAGGAAACCGACTGGATTACGGCCATTCATTCAGAAAAAGGGCAGGCGCGCATACTGCTCATTGGCGGTTCCGTCATGCG GCATTTGTGGCGGCCCCTTGCCTCAGAACTTCAGGAAGACATTGATTTGTTCTCCTCCACGCTGATTCCCGGAGATCCGG ACTATCTCCCCACTCTTGCAGGATATTTTCCCTCCGCCGGATACGAAGCCGTCATTGTTTCCTTCGGTTCCCACGTCACC AATAAAGTCTCCGCCATTTCCGTGGATGACTTCCGCAAAAATTACATGGCATTCGTCTCCCAGCTCAGCAAACGCTGCCG TTTCCTCATCCTGGCAACCAGTACGTCCATCATGGATGGGCCGGACGGCACGCTGAATGAAGAAAAAGAGAAAATCATCA CCGCCTTTAATGCCATTGTCCGCGAGGCGGCATCTTCCCTGCCCGGCGCGGTTCTTTCAGACCACCATGACTTCATGCAG GGGCGCAGATATATAGATCCCTTCCATTTCTCCCCTCCGGACCGCGCGTACCAGGCAGGGAAAACAGCCGGACTGCTCCT GCCCCTTCTCTCCGCCCGGCAGGAACCGCCAAAGGAACAGGAATACCCGCAAAGCCGCCCCGAACCATGA
Upstream 100 bases:
>100_bases GGTTTTCCAAAAACGGAATAGACACGCTCCAAATCCTCGGATACACTCTTTATTCTGCAAAGAAGCTCCCCCGATCATCC CTGTAACTGCTGTTTTTCCC
Downstream 100 bases:
>100_bases AACGGACAAATGAACGAAAACCGCCAAATTATTTTCCATGCGGGGAAAAACGGTTACCCCCCGCAAAAATCCCGGCCCCG GCATTTAAAGACTTCAGATT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 449; Mature: 449
Protein sequence:
>449_residues MFIYSYQQHDHLLPGNDRMLVIGSSALAKNHGHLKSSRLAADTLIFNFPLNHPRLWRQMEHSLSGARYSIILFMWPPLHL SPANGRLMEKPPEGGGPTESAEDMLCRLFAFLRKQTRRLILLSSPPSDYGSARHPYAEEPGVLEAWNALLRTLAGKLNLP FIDFCGDMLQYRPLPGSGEEDFPEAYRNLGKQVLHRLPFGQTWVRRRSGKIHRLLEKRRKRRKERMLARWRTLAAPPHYR EETDWITAIHSEKGQARILLIGGSVMRHLWRPLASELQEDIDLFSSTLIPGDPDYLPTLAGYFPSAGYEAVIVSFGSHVT NKVSAISVDDFRKNYMAFVSQLSKRCRFLILATSTSIMDGPDGTLNEEKEKIITAFNAIVREAASSLPGAVLSDHHDFMQ GRRYIDPFHFSPPDRAYQAGKTAGLLLPLLSARQEPPKEQEYPQSRPEP
Sequences:
>Translated_449_residues MFIYSYQQHDHLLPGNDRMLVIGSSALAKNHGHLKSSRLAADTLIFNFPLNHPRLWRQMEHSLSGARYSIILFMWPPLHL SPANGRLMEKPPEGGGPTESAEDMLCRLFAFLRKQTRRLILLSSPPSDYGSARHPYAEEPGVLEAWNALLRTLAGKLNLP FIDFCGDMLQYRPLPGSGEEDFPEAYRNLGKQVLHRLPFGQTWVRRRSGKIHRLLEKRRKRRKERMLARWRTLAAPPHYR EETDWITAIHSEKGQARILLIGGSVMRHLWRPLASELQEDIDLFSSTLIPGDPDYLPTLAGYFPSAGYEAVIVSFGSHVT NKVSAISVDDFRKNYMAFVSQLSKRCRFLILATSTSIMDGPDGTLNEEKEKIITAFNAIVREAASSLPGAVLSDHHDFMQ GRRYIDPFHFSPPDRAYQAGKTAGLLLPLLSARQEPPKEQEYPQSRPEP >Mature_449_residues MFIYSYQQHDHLLPGNDRMLVIGSSALAKNHGHLKSSRLAADTLIFNFPLNHPRLWRQMEHSLSGARYSIILFMWPPLHL SPANGRLMEKPPEGGGPTESAEDMLCRLFAFLRKQTRRLILLSSPPSDYGSARHPYAEEPGVLEAWNALLRTLAGKLNLP FIDFCGDMLQYRPLPGSGEEDFPEAYRNLGKQVLHRLPFGQTWVRRRSGKIHRLLEKRRKRRKERMLARWRTLAAPPHYR EETDWITAIHSEKGQARILLIGGSVMRHLWRPLASELQEDIDLFSSTLIPGDPDYLPTLAGYFPSAGYEAVIVSFGSHVT NKVSAISVDDFRKNYMAFVSQLSKRCRFLILATSTSIMDGPDGTLNEEKEKIITAFNAIVREAASSLPGAVLSDHHDFMQ GRRYIDPFHFSPPDRAYQAGKTAGLLLPLLSARQEPPKEQEYPQSRPEP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50971; Mature: 50971
Theoretical pI: Translated: 9.66; Mature: 9.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFIYSYQQHDHLLPGNDRMLVIGSSALAKNHGHLKSSRLAADTLIFNFPLNHPRLWRQME CEEECCCCCCCCCCCCCEEEEEECHHHHHCCCCCHHHHHHHHHEEEECCCCCHHHHHHHH HSLSGARYSIILFMWPPLHLSPANGRLMEKPPEGGGPTESAEDMLCRLFAFLRKQTRRLI HHHCCCEEEEEEEECCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEE LLSSPPSDYGSARHPYAEEPGVLEAWNALLRTLAGKLNLPFIDFCGDMLQYRPLPGSGEE EEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCC DFPEAYRNLGKQVLHRLPFGQTWVRRRSGKIHRLLEKRRKRRKERMLARWRTLAAPPHYR HHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC EETDWITAIHSEKGQARILLIGGSVMRHLWRPLASELQEDIDLFSSTLIPGDPDYLPTLA CCCHHHHHEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH GYFPSAGYEAVIVSFGSHVTNKVSAISVDDFRKNYMAFVSQLSKRCRFLILATSTSIMDG HHCCCCCCCEEEEEHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCC PDGTLNEEKEKIITAFNAIVREAASSLPGAVLSDHHDFMQGRRYIDPFHFSPPDRAYQAG CCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHCCCCCCCCCCCCCHHHHHCC KTAGLLLPLLSARQEPPKEQEYPQSRPEP CHHHHHHHHHHHCCCCCCHHCCCCCCCCC >Mature Secondary Structure MFIYSYQQHDHLLPGNDRMLVIGSSALAKNHGHLKSSRLAADTLIFNFPLNHPRLWRQME CEEECCCCCCCCCCCCCEEEEEECHHHHHCCCCCHHHHHHHHHEEEECCCCCHHHHHHHH HSLSGARYSIILFMWPPLHLSPANGRLMEKPPEGGGPTESAEDMLCRLFAFLRKQTRRLI HHHCCCEEEEEEEECCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEE LLSSPPSDYGSARHPYAEEPGVLEAWNALLRTLAGKLNLPFIDFCGDMLQYRPLPGSGEE EEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCC DFPEAYRNLGKQVLHRLPFGQTWVRRRSGKIHRLLEKRRKRRKERMLARWRTLAAPPHYR HHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC EETDWITAIHSEKGQARILLIGGSVMRHLWRPLASELQEDIDLFSSTLIPGDPDYLPTLA CCCHHHHHEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH GYFPSAGYEAVIVSFGSHVTNKVSAISVDDFRKNYMAFVSQLSKRCRFLILATSTSIMDG HHCCCCCCCEEEEEHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCC PDGTLNEEKEKIITAFNAIVREAASSLPGAVLSDHHDFMQGRRYIDPFHFSPPDRAYQAG CCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHCCCCCCCCCCCCCHHHHHCC KTAGLLLPLLSARQEPPKEQEYPQSRPEP CHHHHHHHHHHHCCCCCCHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA