Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is epsJ [H]
Identifier: 187735442
GI number: 187735442
Start: 1121219
End: 1122349
Strand: Reverse
Name: epsJ [H]
Synonym: Amuc_0941
Alternate gene names: 187735442
Gene position: 1122349-1121219 (Counterclockwise)
Preceding gene: 187735443
Following gene: 187735441
Centisome position: 42.13
GC content: 57.56
Gene sequence:
>1131_bases ATGCCTCTCCCCTCACCCCTCATTTCCGTCATCGTCCCCATCTACAACATGGAGCCTCTTCTTCCGCGCTGTCTGGACAG CCTGGCGGCACAAACCCTCCGCGACCTGGAAATCATCTGCGTGGACGACGGTTCAACCGACGGGTCCGGAGGCATCGTCC GGAAATATGCTTCCGGAGACAGTCGTTTCCGCCTGATTACACAGGAAAATTCCGGCAGGGCGGAAGCCCGTAACGCGGGA ATCAGGGCAGCCGCGGCGCCTTACCTGGGTTTTGCGGATCCGGATGACTACGTTGAGCCGGACATGTACGAACGGCTCTA CCGGCTCGCGGAAGAAAGCGGGGCGGACATGGTCCAATGTTCCTATTCCCCCTTCCTTCCGGCTGAAAGCGGAGAATCGC GCGGAATGGCTGAGGAAAAACTCCTTCATATTGAAAACACCGCCTGCGACGGCGTCTTTACGGAGAAAGGAGAAATATTC AGGCTCTTTCTGGAAGACAGGATCACCGGCGTCGTCTGGAGCAAATTGTTCAGGCGGATACTCCCCGGCTGTTCCGCCCC CCTGGAAGTCCGCCTGCCTTCTTCCTTCACCAGCGGAGAAGACACCCTTTACGTTTCCCGGGCCATCGCCCGCTGCCGCA GCGTCGCCCTCACCTCTGAAAAACTCTACCACTACGGGCTGGGCGGTCCCCAATCCGTTTCTTCTCGCAACCGGAAAGCG GAAACCCGGCCCGCAAGTTATTACGCCGTATTCGAGATGCTCACCAGGGAAAAACTCCGGGAAGGGGTTCTGGGCAGCAA CCGCACGGCCTACATGAATTATATTGTCCCCCTGCTTTTTCCGGACAATGAAATGCCGGCCGGGCGGCTCAGGCATTGGG CGGAACTCTGGCGGGAGGCGGACATCACTTCCGAACACGTTTGCGGGATGCCCAGGGAACAGAGGGCTTATCTTGAGGCC GCCCTGGCCGGACGGTGGATTTACCTGCGCCTCCTTCAATGCTTCTGGAAGTTCAAGACCGCCAGAAGGAAAATGTTTCG GCTGAGGTTTTCCAAAAACGGAATAGACACGCTCCAAATCCTCGGATACACTCTTTATTCTGCAAAGAAGCTCCCCCGAT CATCCCTGTAA
Upstream 100 bases:
>100_bases TCTGGTTCAACAGGGAGGAAGGCGACCGGTACCATACGGATGACGCGCTCATCCCCGGCTCATGGCTCCGGATATAACCC CGTTTCCTATACAGCAGACC
Downstream 100 bases:
>100_bases CTGCTGTTTTTCCCGTGTTCATCTATTCCTACCAGCAACACGACCACCTCCTGCCCGGCAATGACAGAATGCTGGTGATC GGCAGTTCCGCTCTGGCAAA
Product: glycosyl transferase family 2
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 376; Mature: 375
Protein sequence:
>376_residues MPLPSPLISVIVPIYNMEPLLPRCLDSLAAQTLRDLEIICVDDGSTDGSGGIVRKYASGDSRFRLITQENSGRAEARNAG IRAAAAPYLGFADPDDYVEPDMYERLYRLAEESGADMVQCSYSPFLPAESGESRGMAEEKLLHIENTACDGVFTEKGEIF RLFLEDRITGVVWSKLFRRILPGCSAPLEVRLPSSFTSGEDTLYVSRAIARCRSVALTSEKLYHYGLGGPQSVSSRNRKA ETRPASYYAVFEMLTREKLREGVLGSNRTAYMNYIVPLLFPDNEMPAGRLRHWAELWREADITSEHVCGMPREQRAYLEA ALAGRWIYLRLLQCFWKFKTARRKMFRLRFSKNGIDTLQILGYTLYSAKKLPRSSL
Sequences:
>Translated_376_residues MPLPSPLISVIVPIYNMEPLLPRCLDSLAAQTLRDLEIICVDDGSTDGSGGIVRKYASGDSRFRLITQENSGRAEARNAG IRAAAAPYLGFADPDDYVEPDMYERLYRLAEESGADMVQCSYSPFLPAESGESRGMAEEKLLHIENTACDGVFTEKGEIF RLFLEDRITGVVWSKLFRRILPGCSAPLEVRLPSSFTSGEDTLYVSRAIARCRSVALTSEKLYHYGLGGPQSVSSRNRKA ETRPASYYAVFEMLTREKLREGVLGSNRTAYMNYIVPLLFPDNEMPAGRLRHWAELWREADITSEHVCGMPREQRAYLEA ALAGRWIYLRLLQCFWKFKTARRKMFRLRFSKNGIDTLQILGYTLYSAKKLPRSSL >Mature_375_residues PLPSPLISVIVPIYNMEPLLPRCLDSLAAQTLRDLEIICVDDGSTDGSGGIVRKYASGDSRFRLITQENSGRAEARNAGI RAAAAPYLGFADPDDYVEPDMYERLYRLAEESGADMVQCSYSPFLPAESGESRGMAEEKLLHIENTACDGVFTEKGEIFR LFLEDRITGVVWSKLFRRILPGCSAPLEVRLPSSFTSGEDTLYVSRAIARCRSVALTSEKLYHYGLGGPQSVSSRNRKAE TRPASYYAVFEMLTREKLREGVLGSNRTAYMNYIVPLLFPDNEMPAGRLRHWAELWREADITSEHVCGMPREQRAYLEAA LAGRWIYLRLLQCFWKFKTARRKMFRLRFSKNGIDTLQILGYTLYSAKKLPRSSL
Specific function: May be involved in the production of the exopolysaccharide (EPS) component of the extracellular matrix during biofilm formation. EPS is responsible for the adhesion of chains of cells into bundles [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 2 family [H]
Homologues:
Organism=Escherichia coli, GI1790044, Length=258, Percent_Identity=32.5581395348837, Blast_Score=112, Evalue=5e-26, Organism=Escherichia coli, GI1786560, Length=119, Percent_Identity=40.3361344537815, Blast_Score=67, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: 2.-.-.- [C]
Molecular weight: Translated: 42476; Mature: 42345
Theoretical pI: Translated: 8.35; Mature: 8.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLPSPLISVIVPIYNMEPLLPRCLDSLAAQTLRDLEIICVDDGSTDGSGGIVRKYASGD CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCEEEEECCCC SRFRLITQENSGRAEARNAGIRAAAAPYLGFADPDDYVEPDMYERLYRLAEESGADMVQC CEEEEEEECCCCCHHHHHCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEE SYSPFLPAESGESRGMAEEKLLHIENTACDGVFTEKGEIFRLFLEDRITGVVWSKLFRRI CCCCCCCCCCCCCCCCHHHHHEEECCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHH LPGCSAPLEVRLPSSFTSGEDTLYVSRAIARCRSVALTSEKLYHYGLGGPQSVSSRNRKA CCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCC ETRPASYYAVFEMLTREKLREGVLGSNRTAYMNYIVPLLFPDNEMPAGRLRHWAELWREA CCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHC DITSEHVCGMPREQRAYLEAALAGRWIYLRLLQCFWKFKTARRKMFRLRFSKNGIDTLQI CCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH LGYTLYSAKKLPRSSL HHHHHHHHHCCCCCCC >Mature Secondary Structure PLPSPLISVIVPIYNMEPLLPRCLDSLAAQTLRDLEIICVDDGSTDGSGGIVRKYASGD CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCEEEEECCCC SRFRLITQENSGRAEARNAGIRAAAAPYLGFADPDDYVEPDMYERLYRLAEESGADMVQC CEEEEEEECCCCCHHHHHCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEE SYSPFLPAESGESRGMAEEKLLHIENTACDGVFTEKGEIFRLFLEDRITGVVWSKLFRRI CCCCCCCCCCCCCCCCHHHHHEEECCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHH LPGCSAPLEVRLPSSFTSGEDTLYVSRAIARCRSVALTSEKLYHYGLGGPQSVSSRNRKA CCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCC ETRPASYYAVFEMLTREKLREGVLGSNRTAYMNYIVPLLFPDNEMPAGRLRHWAELWREA CCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHC DITSEHVCGMPREQRAYLEAALAGRWIYLRLLQCFWKFKTARRKMFRLRFSKNGIDTLQI CCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH LGYTLYSAKKLPRSSL HHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8969506; 9384377 [H]