Definition Akkermansia muciniphila ATCC BAA-835, complete genome.
Accession NC_010655
Length 2,664,102

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The map label for this gene is yidE [C]

Identifier: 187735358

GI number: 187735358

Start: 1020760

End: 1022373

Strand: Reverse

Name: yidE [C]

Synonym: Amuc_0856

Alternate gene names: 187735358

Gene position: 1022373-1020760 (Counterclockwise)

Preceding gene: 187735359

Following gene: 187735355

Centisome position: 38.38

GC content: 60.84

Gene sequence:

>1614_bases
ATGTTTGATATCCTGCTCCATCACAGTACCCTGGTTCTTTTCGGAATCATATTTTTCGGCATCGCTCTCGGCAGCATTAA
AATATACGGACTGAACCTGGGCCTTTCCGGCGTTCTTTTCGTGGCTCTGGCCGCCGGCCACTACCGCCTGGCCATTCCCG
ACGGCGTAGGGCAGCTGGGTCTGGCGCTCTTTGTGTACTGCGTGGGCCTCAGCGCGGGCAACCGCTTCTTTTCCGCCATC
GCCAAGCAGGGCAGCAAACTGGCCATCATGTCTGCGGTGATTGTAGGAGTGTCAGCTTTATTCACCTGCCTCTTCGGCAT
CTGGTTCAAAGTTCCCGCGGGAATCTCTTCCGGCATCTTTGCCGGCGCATGCACCAGCACCCCGGCGCTGGCGGCCGCCA
CGGAAAGCCTGCCGGGAGCCTCCGGAAGCGGCGTCAGCATCGGTTACGGCATCGCCTATCCGTTCGGCGTGGTGGGCGTG
GTCCTTTTCGTCCAGCTTCTGCCGCGCCTGCTGCACTTTGACCTCAACAAAGAGGCCAAAGCCATGCATTCCAGACAGGA
GGTCAGCATCATTTCCCGCCTTGTCCGCGTCACACAGCCCAACCTGATAGGCCAGAACATTGCGGACTGCAAGCTGCTGG
ACGGCCTGCACTGCATGGTCACCCGCGTGGTTCGCAACGACAGGCTGATGCCTCTGACTCCGGAAGACACGTTCCGGGAA
GGAACGGAAGTCCTCATCGTGGGCAACAGCGACACCATGCCCCACGACATCGCCTTTCTGGGGGAAGTATGTGACAATCC
CTACCCCATGGACTCCCAGAAGGAGCGCCGCAAACTGATTCTGACAAACAAGAACTATGCCGGGCACAAGCTCCGCGACC
TGAAAACCCTGCGTACGGACGGTATCATTATCTCCCGCATTTCCCGCCTGGGCTTCACTTTCGTCCCCACGGGGGAAACC
ACGCTGGAACGCAACGACGTGCTGACCGTGGTGGGGACCCCGGAAAACCTTACCAAATACGGGGACAAAATCGGCCACCG
CAGCCAGGACATGAACCAGACGGACCTGCTTTCCCTGGGCTTCGGCCTCTCCCTGGGCATCATTCTTGGCCTGGTCAACT
TCAGCCTCGGCAACGGCGCGGGAATCTCCCTGGGTATTGCGGGAGGCCCCCTCATCGTCGCCCTGCTGCTCGGCCACTTC
GGACGGCTGGGCCCCATCGTCGGCTACATCCCGCGCCCCACGCGCCTTCTTTTACAGGACCTGGGGCTGGTCTTCTTCCT
GGCTGACGCCGGCATCAAGGGCGGAGCGGACCTGGTGGATACGGTAGCCACCCACGGCGCGGCCGTCTTCATCATGGGCG
TTATCGTCACCTGCTCCGGCATGTTTGCCGGTTACTTCGTGGGCATGAAGGTCTTCAAGATGAACATTCTGGAATGCCTG
GGCGGCATCTGCGGCGGCATGACCTCCACCCCGGCTCTGGGGGCCATCGCCAGCAAAACGGACTCCCAGGCTCCCGTGGT
CAGCTACGCCACCGCCTACCCCGTGGCCCTTATCCTGATGACCATCATTGCCAAGGTCATCATCCAGACCATCGGCGGCG
TGGTGGGCATCTAG

Upstream 100 bases:

>100_bases
ATACGCCGCACCCTCTACTTTTTCAACGCACGCATTCTCATCCTGACGGGCATTCCCCCTCCCTTCGTCAAGGAAGGGAA
CAAAACCGCTAACCGCCTTT

Downstream 100 bases:

>100_bases
GACTGCCAGCAAATCCACAGGAACTCAATAAAGAATAAAGGCGGCAATAATTCTTTTATTGCCGCCTTCATGTTAGTGCC
CCCTTAACGCAACTGCCCCA

Product: YidE/YbjL duplication

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 537; Mature: 537

Protein sequence:

>537_residues
MFDILLHHSTLVLFGIIFFGIALGSIKIYGLNLGLSGVLFVALAAGHYRLAIPDGVGQLGLALFVYCVGLSAGNRFFSAI
AKQGSKLAIMSAVIVGVSALFTCLFGIWFKVPAGISSGIFAGACTSTPALAAATESLPGASGSGVSIGYGIAYPFGVVGV
VLFVQLLPRLLHFDLNKEAKAMHSRQEVSIISRLVRVTQPNLIGQNIADCKLLDGLHCMVTRVVRNDRLMPLTPEDTFRE
GTEVLIVGNSDTMPHDIAFLGEVCDNPYPMDSQKERRKLILTNKNYAGHKLRDLKTLRTDGIIISRISRLGFTFVPTGET
TLERNDVLTVVGTPENLTKYGDKIGHRSQDMNQTDLLSLGFGLSLGIILGLVNFSLGNGAGISLGIAGGPLIVALLLGHF
GRLGPIVGYIPRPTRLLLQDLGLVFFLADAGIKGGADLVDTVATHGAAVFIMGVIVTCSGMFAGYFVGMKVFKMNILECL
GGICGGMTSTPALGAIASKTDSQAPVVSYATAYPVALILMTIIAKVIIQTIGGVVGI

Sequences:

>Translated_537_residues
MFDILLHHSTLVLFGIIFFGIALGSIKIYGLNLGLSGVLFVALAAGHYRLAIPDGVGQLGLALFVYCVGLSAGNRFFSAI
AKQGSKLAIMSAVIVGVSALFTCLFGIWFKVPAGISSGIFAGACTSTPALAAATESLPGASGSGVSIGYGIAYPFGVVGV
VLFVQLLPRLLHFDLNKEAKAMHSRQEVSIISRLVRVTQPNLIGQNIADCKLLDGLHCMVTRVVRNDRLMPLTPEDTFRE
GTEVLIVGNSDTMPHDIAFLGEVCDNPYPMDSQKERRKLILTNKNYAGHKLRDLKTLRTDGIIISRISRLGFTFVPTGET
TLERNDVLTVVGTPENLTKYGDKIGHRSQDMNQTDLLSLGFGLSLGIILGLVNFSLGNGAGISLGIAGGPLIVALLLGHF
GRLGPIVGYIPRPTRLLLQDLGLVFFLADAGIKGGADLVDTVATHGAAVFIMGVIVTCSGMFAGYFVGMKVFKMNILECL
GGICGGMTSTPALGAIASKTDSQAPVVSYATAYPVALILMTIIAKVIIQTIGGVVGI
>Mature_537_residues
MFDILLHHSTLVLFGIIFFGIALGSIKIYGLNLGLSGVLFVALAAGHYRLAIPDGVGQLGLALFVYCVGLSAGNRFFSAI
AKQGSKLAIMSAVIVGVSALFTCLFGIWFKVPAGISSGIFAGACTSTPALAAATESLPGASGSGVSIGYGIAYPFGVVGV
VLFVQLLPRLLHFDLNKEAKAMHSRQEVSIISRLVRVTQPNLIGQNIADCKLLDGLHCMVTRVVRNDRLMPLTPEDTFRE
GTEVLIVGNSDTMPHDIAFLGEVCDNPYPMDSQKERRKLILTNKNYAGHKLRDLKTLRTDGIIISRISRLGFTFVPTGET
TLERNDVLTVVGTPENLTKYGDKIGHRSQDMNQTDLLSLGFGLSLGIILGLVNFSLGNGAGISLGIAGGPLIVALLLGHF
GRLGPIVGYIPRPTRLLLQDLGLVFFLADAGIKGGADLVDTVATHGAAVFIMGVIVTCSGMFAGYFVGMKVFKMNILECL
GGICGGMTSTPALGAIASKTDSQAPVVSYATAYPVALILMTIIAKVIIQTIGGVVGI

Specific function: Unknown

COG id: COG2985

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 RCK C-terminal domains [H]

Homologues:

Organism=Escherichia coli, GI87082315, Length=547, Percent_Identity=30.3473491773309, Blast_Score=229, Evalue=2e-61,
Organism=Escherichia coli, GI1787071, Length=558, Percent_Identity=27.2401433691756, Blast_Score=194, Evalue=1e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006037
- InterPro:   IPR006512 [H]

Pfam domain/function: PF06826 Asp-Al_Ex; PF02080 TrkA_C [H]

EC number: NA

Molecular weight: Translated: 56586; Mature: 56586

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDILLHHSTLVLFGIIFFGIALGSIKIYGLNLGLSGVLFVALAAGHYRLAIPDGVGQLG
CCEEEEHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCEEEECCCCCHHHH
LALFVYCVGLSAGNRFFSAIAKQGSKLAIMSAVIVGVSALFTCLFGIWFKVPAGISSGIF
HHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
AGACTSTPALAAATESLPGASGSGVSIGYGIAYPFGVVGVVLFVQLLPRLLHFDLNKEAK
CCCCCCCCHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
AMHSRQEVSIISRLVRVTQPNLIGQNIADCKLLDGLHCMVTRVVRNDRLMPLTPEDTFRE
HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHCC
GTEVLIVGNSDTMPHDIAFLGEVCDNPYPMDSQKERRKLILTNKNYAGHKLRDLKTLRTD
CCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHCCEEEEECCCCCCCHHHHHHHHHHC
GIIISRISRLGFTFVPTGETTLERNDVLTVVGTPENLTKYGDKIGHRSQDMNQTDLLSLG
CHHHHHHHHCCEEEECCCCCEECCCCEEEEEECCHHHHHHHHHHCCCCCCCCHHHHHHHH
FGLSLGIILGLVNFSLGNGAGISLGIAGGPLIVALLLGHFGRLGPIVGYIPRPTRLLLQD
HHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHH
LGLVFFLADAGIKGGADLVDTVATHGAAVFIMGVIVTCSGMFAGYFVGMKVFKMNILECL
HHHHEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GGICGGMTSTPALGAIASKTDSQAPVVSYATAYPVALILMTIIAKVIIQTIGGVVGI
HHHHCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFDILLHHSTLVLFGIIFFGIALGSIKIYGLNLGLSGVLFVALAAGHYRLAIPDGVGQLG
CCEEEEHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCEEEECCCCCHHHH
LALFVYCVGLSAGNRFFSAIAKQGSKLAIMSAVIVGVSALFTCLFGIWFKVPAGISSGIF
HHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
AGACTSTPALAAATESLPGASGSGVSIGYGIAYPFGVVGVVLFVQLLPRLLHFDLNKEAK
CCCCCCCCHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
AMHSRQEVSIISRLVRVTQPNLIGQNIADCKLLDGLHCMVTRVVRNDRLMPLTPEDTFRE
HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHCC
GTEVLIVGNSDTMPHDIAFLGEVCDNPYPMDSQKERRKLILTNKNYAGHKLRDLKTLRTD
CCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHCCEEEEECCCCCCCHHHHHHHHHHC
GIIISRISRLGFTFVPTGETTLERNDVLTVVGTPENLTKYGDKIGHRSQDMNQTDLLSLG
CHHHHHHHHCCEEEECCCCCEECCCCEEEEEECCHHHHHHHHHHCCCCCCCCHHHHHHHH
FGLSLGIILGLVNFSLGNGAGISLGIAGGPLIVALLLGHFGRLGPIVGYIPRPTRLLLQD
HHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHH
LGLVFFLADAGIKGGADLVDTVATHGAAVFIMGVIVTCSGMFAGYFVGMKVFKMNILECL
HHHHEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GGICGGMTSTPALGAIASKTDSQAPVVSYATAYPVALILMTIIAKVIIQTIGGVVGI
HHHHCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12835416 [H]