Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is yidE [C]
Identifier: 187735358
GI number: 187735358
Start: 1020760
End: 1022373
Strand: Reverse
Name: yidE [C]
Synonym: Amuc_0856
Alternate gene names: 187735358
Gene position: 1022373-1020760 (Counterclockwise)
Preceding gene: 187735359
Following gene: 187735355
Centisome position: 38.38
GC content: 60.84
Gene sequence:
>1614_bases ATGTTTGATATCCTGCTCCATCACAGTACCCTGGTTCTTTTCGGAATCATATTTTTCGGCATCGCTCTCGGCAGCATTAA AATATACGGACTGAACCTGGGCCTTTCCGGCGTTCTTTTCGTGGCTCTGGCCGCCGGCCACTACCGCCTGGCCATTCCCG ACGGCGTAGGGCAGCTGGGTCTGGCGCTCTTTGTGTACTGCGTGGGCCTCAGCGCGGGCAACCGCTTCTTTTCCGCCATC GCCAAGCAGGGCAGCAAACTGGCCATCATGTCTGCGGTGATTGTAGGAGTGTCAGCTTTATTCACCTGCCTCTTCGGCAT CTGGTTCAAAGTTCCCGCGGGAATCTCTTCCGGCATCTTTGCCGGCGCATGCACCAGCACCCCGGCGCTGGCGGCCGCCA CGGAAAGCCTGCCGGGAGCCTCCGGAAGCGGCGTCAGCATCGGTTACGGCATCGCCTATCCGTTCGGCGTGGTGGGCGTG GTCCTTTTCGTCCAGCTTCTGCCGCGCCTGCTGCACTTTGACCTCAACAAAGAGGCCAAAGCCATGCATTCCAGACAGGA GGTCAGCATCATTTCCCGCCTTGTCCGCGTCACACAGCCCAACCTGATAGGCCAGAACATTGCGGACTGCAAGCTGCTGG ACGGCCTGCACTGCATGGTCACCCGCGTGGTTCGCAACGACAGGCTGATGCCTCTGACTCCGGAAGACACGTTCCGGGAA GGAACGGAAGTCCTCATCGTGGGCAACAGCGACACCATGCCCCACGACATCGCCTTTCTGGGGGAAGTATGTGACAATCC CTACCCCATGGACTCCCAGAAGGAGCGCCGCAAACTGATTCTGACAAACAAGAACTATGCCGGGCACAAGCTCCGCGACC TGAAAACCCTGCGTACGGACGGTATCATTATCTCCCGCATTTCCCGCCTGGGCTTCACTTTCGTCCCCACGGGGGAAACC ACGCTGGAACGCAACGACGTGCTGACCGTGGTGGGGACCCCGGAAAACCTTACCAAATACGGGGACAAAATCGGCCACCG CAGCCAGGACATGAACCAGACGGACCTGCTTTCCCTGGGCTTCGGCCTCTCCCTGGGCATCATTCTTGGCCTGGTCAACT TCAGCCTCGGCAACGGCGCGGGAATCTCCCTGGGTATTGCGGGAGGCCCCCTCATCGTCGCCCTGCTGCTCGGCCACTTC GGACGGCTGGGCCCCATCGTCGGCTACATCCCGCGCCCCACGCGCCTTCTTTTACAGGACCTGGGGCTGGTCTTCTTCCT GGCTGACGCCGGCATCAAGGGCGGAGCGGACCTGGTGGATACGGTAGCCACCCACGGCGCGGCCGTCTTCATCATGGGCG TTATCGTCACCTGCTCCGGCATGTTTGCCGGTTACTTCGTGGGCATGAAGGTCTTCAAGATGAACATTCTGGAATGCCTG GGCGGCATCTGCGGCGGCATGACCTCCACCCCGGCTCTGGGGGCCATCGCCAGCAAAACGGACTCCCAGGCTCCCGTGGT CAGCTACGCCACCGCCTACCCCGTGGCCCTTATCCTGATGACCATCATTGCCAAGGTCATCATCCAGACCATCGGCGGCG TGGTGGGCATCTAG
Upstream 100 bases:
>100_bases ATACGCCGCACCCTCTACTTTTTCAACGCACGCATTCTCATCCTGACGGGCATTCCCCCTCCCTTCGTCAAGGAAGGGAA CAAAACCGCTAACCGCCTTT
Downstream 100 bases:
>100_bases GACTGCCAGCAAATCCACAGGAACTCAATAAAGAATAAAGGCGGCAATAATTCTTTTATTGCCGCCTTCATGTTAGTGCC CCCTTAACGCAACTGCCCCA
Product: YidE/YbjL duplication
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 537; Mature: 537
Protein sequence:
>537_residues MFDILLHHSTLVLFGIIFFGIALGSIKIYGLNLGLSGVLFVALAAGHYRLAIPDGVGQLGLALFVYCVGLSAGNRFFSAI AKQGSKLAIMSAVIVGVSALFTCLFGIWFKVPAGISSGIFAGACTSTPALAAATESLPGASGSGVSIGYGIAYPFGVVGV VLFVQLLPRLLHFDLNKEAKAMHSRQEVSIISRLVRVTQPNLIGQNIADCKLLDGLHCMVTRVVRNDRLMPLTPEDTFRE GTEVLIVGNSDTMPHDIAFLGEVCDNPYPMDSQKERRKLILTNKNYAGHKLRDLKTLRTDGIIISRISRLGFTFVPTGET TLERNDVLTVVGTPENLTKYGDKIGHRSQDMNQTDLLSLGFGLSLGIILGLVNFSLGNGAGISLGIAGGPLIVALLLGHF GRLGPIVGYIPRPTRLLLQDLGLVFFLADAGIKGGADLVDTVATHGAAVFIMGVIVTCSGMFAGYFVGMKVFKMNILECL GGICGGMTSTPALGAIASKTDSQAPVVSYATAYPVALILMTIIAKVIIQTIGGVVGI
Sequences:
>Translated_537_residues MFDILLHHSTLVLFGIIFFGIALGSIKIYGLNLGLSGVLFVALAAGHYRLAIPDGVGQLGLALFVYCVGLSAGNRFFSAI AKQGSKLAIMSAVIVGVSALFTCLFGIWFKVPAGISSGIFAGACTSTPALAAATESLPGASGSGVSIGYGIAYPFGVVGV VLFVQLLPRLLHFDLNKEAKAMHSRQEVSIISRLVRVTQPNLIGQNIADCKLLDGLHCMVTRVVRNDRLMPLTPEDTFRE GTEVLIVGNSDTMPHDIAFLGEVCDNPYPMDSQKERRKLILTNKNYAGHKLRDLKTLRTDGIIISRISRLGFTFVPTGET TLERNDVLTVVGTPENLTKYGDKIGHRSQDMNQTDLLSLGFGLSLGIILGLVNFSLGNGAGISLGIAGGPLIVALLLGHF GRLGPIVGYIPRPTRLLLQDLGLVFFLADAGIKGGADLVDTVATHGAAVFIMGVIVTCSGMFAGYFVGMKVFKMNILECL GGICGGMTSTPALGAIASKTDSQAPVVSYATAYPVALILMTIIAKVIIQTIGGVVGI >Mature_537_residues MFDILLHHSTLVLFGIIFFGIALGSIKIYGLNLGLSGVLFVALAAGHYRLAIPDGVGQLGLALFVYCVGLSAGNRFFSAI AKQGSKLAIMSAVIVGVSALFTCLFGIWFKVPAGISSGIFAGACTSTPALAAATESLPGASGSGVSIGYGIAYPFGVVGV VLFVQLLPRLLHFDLNKEAKAMHSRQEVSIISRLVRVTQPNLIGQNIADCKLLDGLHCMVTRVVRNDRLMPLTPEDTFRE GTEVLIVGNSDTMPHDIAFLGEVCDNPYPMDSQKERRKLILTNKNYAGHKLRDLKTLRTDGIIISRISRLGFTFVPTGET TLERNDVLTVVGTPENLTKYGDKIGHRSQDMNQTDLLSLGFGLSLGIILGLVNFSLGNGAGISLGIAGGPLIVALLLGHF GRLGPIVGYIPRPTRLLLQDLGLVFFLADAGIKGGADLVDTVATHGAAVFIMGVIVTCSGMFAGYFVGMKVFKMNILECL GGICGGMTSTPALGAIASKTDSQAPVVSYATAYPVALILMTIIAKVIIQTIGGVVGI
Specific function: Unknown
COG id: COG2985
COG function: function code R; Predicted permease
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 RCK C-terminal domains [H]
Homologues:
Organism=Escherichia coli, GI87082315, Length=547, Percent_Identity=30.3473491773309, Blast_Score=229, Evalue=2e-61, Organism=Escherichia coli, GI1787071, Length=558, Percent_Identity=27.2401433691756, Blast_Score=194, Evalue=1e-50,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006037 - InterPro: IPR006512 [H]
Pfam domain/function: PF06826 Asp-Al_Ex; PF02080 TrkA_C [H]
EC number: NA
Molecular weight: Translated: 56586; Mature: 56586
Theoretical pI: Translated: 8.61; Mature: 8.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFDILLHHSTLVLFGIIFFGIALGSIKIYGLNLGLSGVLFVALAAGHYRLAIPDGVGQLG CCEEEEHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCEEEECCCCCHHHH LALFVYCVGLSAGNRFFSAIAKQGSKLAIMSAVIVGVSALFTCLFGIWFKVPAGISSGIF HHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC AGACTSTPALAAATESLPGASGSGVSIGYGIAYPFGVVGVVLFVQLLPRLLHFDLNKEAK CCCCCCCCHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH AMHSRQEVSIISRLVRVTQPNLIGQNIADCKLLDGLHCMVTRVVRNDRLMPLTPEDTFRE HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHCC GTEVLIVGNSDTMPHDIAFLGEVCDNPYPMDSQKERRKLILTNKNYAGHKLRDLKTLRTD CCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHCCEEEEECCCCCCCHHHHHHHHHHC GIIISRISRLGFTFVPTGETTLERNDVLTVVGTPENLTKYGDKIGHRSQDMNQTDLLSLG CHHHHHHHHCCEEEECCCCCEECCCCEEEEEECCHHHHHHHHHHCCCCCCCCHHHHHHHH FGLSLGIILGLVNFSLGNGAGISLGIAGGPLIVALLLGHFGRLGPIVGYIPRPTRLLLQD HHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHH LGLVFFLADAGIKGGADLVDTVATHGAAVFIMGVIVTCSGMFAGYFVGMKVFKMNILECL HHHHEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GGICGGMTSTPALGAIASKTDSQAPVVSYATAYPVALILMTIIAKVIIQTIGGVVGI HHHHCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MFDILLHHSTLVLFGIIFFGIALGSIKIYGLNLGLSGVLFVALAAGHYRLAIPDGVGQLG CCEEEEHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCEEEECCCCCHHHH LALFVYCVGLSAGNRFFSAIAKQGSKLAIMSAVIVGVSALFTCLFGIWFKVPAGISSGIF HHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC AGACTSTPALAAATESLPGASGSGVSIGYGIAYPFGVVGVVLFVQLLPRLLHFDLNKEAK CCCCCCCCHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH AMHSRQEVSIISRLVRVTQPNLIGQNIADCKLLDGLHCMVTRVVRNDRLMPLTPEDTFRE HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHCC GTEVLIVGNSDTMPHDIAFLGEVCDNPYPMDSQKERRKLILTNKNYAGHKLRDLKTLRTD CCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHCCEEEEECCCCCCCHHHHHHHHHHC GIIISRISRLGFTFVPTGETTLERNDVLTVVGTPENLTKYGDKIGHRSQDMNQTDLLSLG CHHHHHHHHCCEEEECCCCCEECCCCEEEEEECCHHHHHHHHHHCCCCCCCCHHHHHHHH FGLSLGIILGLVNFSLGNGAGISLGIAGGPLIVALLLGHFGRLGPIVGYIPRPTRLLLQD HHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHH LGLVFFLADAGIKGGADLVDTVATHGAAVFIMGVIVTCSGMFAGYFVGMKVFKMNILECL HHHHEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GGICGGMTSTPALGAIASKTDSQAPVVSYATAYPVALILMTIIAKVIIQTIGGVVGI HHHHCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12835416 [H]