Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is hupR1 [H]
Identifier: 187735359
GI number: 187735359
Start: 1022488
End: 1022967
Strand: Reverse
Name: hupR1 [H]
Synonym: Amuc_0857
Alternate gene names: 187735359
Gene position: 1022967-1022488 (Counterclockwise)
Preceding gene: 187735360
Following gene: 187735358
Centisome position: 38.4
GC content: 56.25
Gene sequence:
>480_bases ATGGAAAAAATTAACATCATTTGCGTGGACGACCAGCCGGAAGTCCTGGACAGCGTTTTGCGCGACCTTCGTCCGCTGAA TTCCTGCTTCCGCCTGGAAGGGGTGGAATCCGCATCCGAATGCCGCGAGCTATTGGAAGAATTCGACCAGGACGGAGAAC TGACGGGACTGATTATTTCCGACCACGTCATGCCGGGAGGTTCAGGAGTAGAATTGCTTGGAGGCATCGCCAAAGACGAC CGTTTTGCCGGGACACGCAAAATCCTGCTGACCGGCCAGGCCACCCACGCGGACACCATCCAGGCCGTCAATGACGCACA CATTGACAACTATCTGGAAAAACCCTGGGATCCCGCCGTTCTCCTTGCGACCGCCCGCAAACTGCTGACCAGGTTCATCA TGGACAAGGGCATCGACCACATGCCCTATATGTCCTGCCTGGACCAGGCCACTCTGCTGGATTACCTGCGGAGAAACTGA
Upstream 100 bases:
>100_bases ATCGTCCGGCGCATTGTGGACAGCTACGGCGGCCGCATCCGCCTGGAGAGCGTTCCGGGCCATACCGTTTTTACGATAGT CATACCAACCATCAACAATC
Downstream 100 bases:
>100_bases CGGGGCTGGAAGGCATACGCCGCACCCTCTACTTTTTCAACGCACGCATTCTCATCCTGACGGGCATTCCCCCTCCCTTC GTCAAGGAAGGGAACAAAAC
Product: response regulator receiver protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 159; Mature: 159
Protein sequence:
>159_residues MEKINIICVDDQPEVLDSVLRDLRPLNSCFRLEGVESASECRELLEEFDQDGELTGLIISDHVMPGGSGVELLGGIAKDD RFAGTRKILLTGQATHADTIQAVNDAHIDNYLEKPWDPAVLLATARKLLTRFIMDKGIDHMPYMSCLDQATLLDYLRRN
Sequences:
>Translated_159_residues MEKINIICVDDQPEVLDSVLRDLRPLNSCFRLEGVESASECRELLEEFDQDGELTGLIISDHVMPGGSGVELLGGIAKDD RFAGTRKILLTGQATHADTIQAVNDAHIDNYLEKPWDPAVLLATARKLLTRFIMDKGIDHMPYMSCLDQATLLDYLRRN >Mature_159_residues MEKINIICVDDQPEVLDSVLRDLRPLNSCFRLEGVESASECRELLEEFDQDGELTGLIISDHVMPGGSGVELLGGIAKDD RFAGTRKILLTGQATHADTIQAVNDAHIDNYLEKPWDPAVLLATARKLLTRFIMDKGIDHMPYMSCLDQATLLDYLRRN
Specific function: Probable member of the two-component regulatory system involved in the regulation of the [NiFe] hydrogenase activity. HupR1 is probably phosphorylated by the sensory component and then acts in conjunction with sigma-54 as a transcriptional activator [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 sigma-54 factor interaction domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011006 - InterPro: IPR020441 - InterPro: IPR009057 - InterPro: IPR002197 - InterPro: IPR002078 - InterPro: IPR001789 [H]
Pfam domain/function: PF02954 HTH_8; PF00072 Response_reg; PF00158 Sigma54_activat [H]
EC number: NA
Molecular weight: Translated: 17757; Mature: 17757
Theoretical pI: Translated: 4.39; Mature: 4.39
Prosite motif: PS50110 RESPONSE_REGULATORY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEKINIICVDDQPEVLDSVLRDLRPLNSCFRLEGVESASECRELLEEFDQDGELTGLIIS CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEEE DHVMPGGSGVELLGGIAKDDRFAGTRKILLTGQATHADTIQAVNDAHIDNYLEKPWDPAV CCCCCCCCCHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHH LLATARKLLTRFIMDKGIDHMPYMSCLDQATLLDYLRRN HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MEKINIICVDDQPEVLDSVLRDLRPLNSCFRLEGVESASECRELLEEFDQDGELTGLIIS CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEEE DHVMPGGSGVELLGGIAKDDRFAGTRKILLTGQATHADTIQAVNDAHIDNYLEKPWDPAV CCCCCCCCCHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHH LLATARKLLTRFIMDKGIDHMPYMSCLDQATLLDYLRRN HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1885559; 8497190; 2007559 [H]