Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is 187735355
Identifier: 187735355
GI number: 187735355
Start: 1016268
End: 1017731
Strand: Reverse
Name: 187735355
Synonym: Amuc_0853
Alternate gene names: NA
Gene position: 1017731-1016268 (Counterclockwise)
Preceding gene: 187735358
Following gene: 187735353
Centisome position: 38.2
GC content: 60.45
Gene sequence:
>1464_bases ATGCCTGCCGCTGATGCCCCGTGCCCGGAACAAGCGTTCAACGCAACTGCGCTGAAGTGGCACACCTGCGCCTGGCTTCT GCTGCCCGTCCTGGTATTCCTGGCCGGGTGGATGCACTGGTACGCCGCTCTCCCCCTCATGTTTTTGACGGCTGCGGGAC TGGCTCCCCGAAAACGCAAGGAACCGCAAACAAGGGATTCCCTCCCTGCCTTCCCCCTGTTTACCCGCTCTTCATTTCTC GCCCTGGCGGCGTTTGCCGCCCTGATGACGCTTTCCGGCTGGGGGGAATGGGTCAACCAGCACCCTGACCATATCGTCAG AAACGCCTGCCTGCGTGAATTGGTAGCCAGCCCATGGCCCGTCATCTTTCCGGACGGGAACATGCTGGTTTACAACACGG GGCTCTGGCTAATCCCAGCCCTGGCGGGAAAACTGGCGGGGCTGGATGCCGCGCGCGTGCTTGTCGTTCTGTGGGGAGCC TGGGGACTGTTTCTTGCCTGGCTGTGGCTCTGCGTTTTCTCCGGACGCCGCTCCCTGCTGCTCGCCCTGCTGATGGCGGC ATTCGGTTCTCTGCTGAATTTCCAGTGCTGGCTGGGGCTGGACCTGTTCCGCCTGCATTACTTCGGCACGGCGGAACAAA TCATGTGCAGCGCAAACGCTTCCATTCCAGTTCTGCTCTTTTTCATCTTCCTGGCTTCGGGACGCATGCCTCTGCCCTGG ATACCCCTTCTGTTCGCAGCCACGGCCTTTTATTCCCCCCTCGCGGCCCTCGGAGGGCTACCCCTGGCGGCCTGCCAGTG GTACCGTCAGTGGAGAGGCGTCCCCCCTCTCCGGGATGTCCTGCTCCATCCCTCCTTTTCGGCCTCCGTTCTGCTGGGAG TGTGCTTCCTTCTTTATTATGGGACGGTAAACGCGCCATCCTCCCACATGGGCATGCGGCCTTTTTATACGCATCCGGGG GATTTCCCGCTTATGGCGACCTCATTCCTGCTGTACGCCCTGTTCTGCTGGCGGGATTTCCGGAGGAATCCCCTCTTTAT CTGTACGCTGGCAACCGGCCTGATTCTGCCTTTTTTTTACGTGAACGGAGACGTCAATGACCTGCTTTGCAAAGGAAGCG TTCCGGTCATGGCCTGCCTGCTTGCCTTTCTGGCTTCCTCCTGGACGCGGCATCCCGGTTTCCGCGTCTGGATATGGCTT CTGCTGGCGTTCGGAATGGCGCCCCGGTTCAACATTCCCTATTATTGCTGTTCTTCCAGCGCCCTCCAGGCGTTTCTGGC GCCTCCGGCTTCGGAAACAGAGCCTTCTTCCTTCGTCAGCCGGGAGTGGAAGCAGCTCTTCTATACGCCCCAGGCGCGCC GTCAGGATGAATGGGGCCGCACCATGCACCACCCCGAACACCGGTGGTATCCCTACTATTCCGGCACGCCGCGCCCATGG CTGCGCTTCATTTACCGTTTTTAA
Upstream 100 bases:
>100_bases TCATTCCTGCCACTATACCCATACAAATCCCCCCCTTCCATTCCGGCCTGCGAGTTTCCTCCTTGCCCCCGCGGGCCGGC CCCATTAAGGTTCAGGGGAA
Downstream 100 bases:
>100_bases CGGCAATCGCTCCGCCCCGGAAAAAGATTCCGCACGCTGCCTTTTTTAAAGGAGCCGGAGGGATGCCGGGAGGATTTTTT CGCTTCCTATAAAATAAACA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 487; Mature: 486
Protein sequence:
>487_residues MPAADAPCPEQAFNATALKWHTCAWLLLPVLVFLAGWMHWYAALPLMFLTAAGLAPRKRKEPQTRDSLPAFPLFTRSSFL ALAAFAALMTLSGWGEWVNQHPDHIVRNACLRELVASPWPVIFPDGNMLVYNTGLWLIPALAGKLAGLDAARVLVVLWGA WGLFLAWLWLCVFSGRRSLLLALLMAAFGSLLNFQCWLGLDLFRLHYFGTAEQIMCSANASIPVLLFFIFLASGRMPLPW IPLLFAATAFYSPLAALGGLPLAACQWYRQWRGVPPLRDVLLHPSFSASVLLGVCFLLYYGTVNAPSSHMGMRPFYTHPG DFPLMATSFLLYALFCWRDFRRNPLFICTLATGLILPFFYVNGDVNDLLCKGSVPVMACLLAFLASSWTRHPGFRVWIWL LLAFGMAPRFNIPYYCCSSSALQAFLAPPASETEPSSFVSREWKQLFYTPQARRQDEWGRTMHHPEHRWYPYYSGTPRPW LRFIYRF
Sequences:
>Translated_487_residues MPAADAPCPEQAFNATALKWHTCAWLLLPVLVFLAGWMHWYAALPLMFLTAAGLAPRKRKEPQTRDSLPAFPLFTRSSFL ALAAFAALMTLSGWGEWVNQHPDHIVRNACLRELVASPWPVIFPDGNMLVYNTGLWLIPALAGKLAGLDAARVLVVLWGA WGLFLAWLWLCVFSGRRSLLLALLMAAFGSLLNFQCWLGLDLFRLHYFGTAEQIMCSANASIPVLLFFIFLASGRMPLPW IPLLFAATAFYSPLAALGGLPLAACQWYRQWRGVPPLRDVLLHPSFSASVLLGVCFLLYYGTVNAPSSHMGMRPFYTHPG DFPLMATSFLLYALFCWRDFRRNPLFICTLATGLILPFFYVNGDVNDLLCKGSVPVMACLLAFLASSWTRHPGFRVWIWL LLAFGMAPRFNIPYYCCSSSALQAFLAPPASETEPSSFVSREWKQLFYTPQARRQDEWGRTMHHPEHRWYPYYSGTPRPW LRFIYRF >Mature_486_residues PAADAPCPEQAFNATALKWHTCAWLLLPVLVFLAGWMHWYAALPLMFLTAAGLAPRKRKEPQTRDSLPAFPLFTRSSFLA LAAFAALMTLSGWGEWVNQHPDHIVRNACLRELVASPWPVIFPDGNMLVYNTGLWLIPALAGKLAGLDAARVLVVLWGAW GLFLAWLWLCVFSGRRSLLLALLMAAFGSLLNFQCWLGLDLFRLHYFGTAEQIMCSANASIPVLLFFIFLASGRMPLPWI PLLFAATAFYSPLAALGGLPLAACQWYRQWRGVPPLRDVLLHPSFSASVLLGVCFLLYYGTVNAPSSHMGMRPFYTHPGD FPLMATSFLLYALFCWRDFRRNPLFICTLATGLILPFFYVNGDVNDLLCKGSVPVMACLLAFLASSWTRHPGFRVWIWLL LAFGMAPRFNIPYYCCSSSALQAFLAPPASETEPSSFVSREWKQLFYTPQARRQDEWGRTMHHPEHRWYPYYSGTPRPWL RFIYRF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55128; Mature: 54997
Theoretical pI: Translated: 9.04; Mature: 9.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAADAPCPEQAFNATALKWHTCAWLLLPVLVFLAGWMHWYAALPLMFLTAAGLAPRKRK CCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC EPQTRDSLPAFPLFTRSSFLALAAFAALMTLSGWGEWVNQHPDHIVRNACLRELVASPWP CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC VIFPDGNMLVYNTGLWLIPALAGKLAGLDAARVLVVLWGAWGLFLAWLWLCVFSGRRSLL EEECCCCEEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH LALLMAAFGSLLNFQCWLGLDLFRLHYFGTAEQIMCSANASIPVLLFFIFLASGRMPLPW HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCCCH IPLLFAATAFYSPLAALGGLPLAACQWYRQWRGVPPLRDVLLHPSFSASVLLGVCFLLYY HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHH GTVNAPSSHMGMRPFYTHPGDFPLMATSFLLYALFCWRDFRRNPLFICTLATGLILPFFY CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHH VNGDVNDLLCKGSVPVMACLLAFLASSWTRHPGFRVWIWLLLAFGMAPRFNIPYYCCSSS CCCCHHHHEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCEEECCHH ALQAFLAPPASETEPSSFVSREWKQLFYTPQARRQDEWGRTMHHPEHRWYPYYSGTPRPW HHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHCCCHHHHHCCCCCCCCCCCCCCCCCHH LRFIYRF HHHHHCC >Mature Secondary Structure PAADAPCPEQAFNATALKWHTCAWLLLPVLVFLAGWMHWYAALPLMFLTAAGLAPRKRK CCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC EPQTRDSLPAFPLFTRSSFLALAAFAALMTLSGWGEWVNQHPDHIVRNACLRELVASPWP CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC VIFPDGNMLVYNTGLWLIPALAGKLAGLDAARVLVVLWGAWGLFLAWLWLCVFSGRRSLL EEECCCCEEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH LALLMAAFGSLLNFQCWLGLDLFRLHYFGTAEQIMCSANASIPVLLFFIFLASGRMPLPW HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCCCH IPLLFAATAFYSPLAALGGLPLAACQWYRQWRGVPPLRDVLLHPSFSASVLLGVCFLLYY HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHH GTVNAPSSHMGMRPFYTHPGDFPLMATSFLLYALFCWRDFRRNPLFICTLATGLILPFFY CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHH VNGDVNDLLCKGSVPVMACLLAFLASSWTRHPGFRVWIWLLLAFGMAPRFNIPYYCCSSS CCCCHHHHEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCEEECCHH ALQAFLAPPASETEPSSFVSREWKQLFYTPQARRQDEWGRTMHHPEHRWYPYYSGTPRPW HHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHCCCHHHHHCCCCCCCCCCCCCCCCCHH LRFIYRF HHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA