Click here to switch to the map view.

The map label for this gene is hupB [C]

Identifier: 187735356

GI number: 187735356

Start: 1017886

End: 1018158

Strand: Direct

Name: hupB [C]

Synonym: Amuc_0854

Alternate gene names: 187735356

Gene position: 1017886-1018158 (Clockwise)

Preceding gene: 187735354

Following gene: 187735357

Centisome position: 38.21

GC content: 59.34

Gene sequence:

>273_bases
ATGAACAAAACACAATTTATCCGGGAGCTCCAGCGTGAGCTGGGGAATGACGTTACTTCCCGGCAGGCGGAACATGCGTT
GAACGCGGTGCTGGAGACGATTGCGCGAGCAGTCCGGAGGCGGTCGCTGGTGAAATTCCGGGGCTTTGGCACTTTCCGCG
TCAAGCGGCGCCGCGCCCGCATCGTACGCCATCCGGAAAACGGCGGCAGGCTGCTGGTGCATGAATCGAAAACCATGAAA
TTCCGCCCCTCTTCCCTTCTGTGGAAGGAGTAG

Upstream 100 bases:

>100_bases
CCGGAATGGAAGGGGGGGATTTGTATGGGTATAGTGGCAGGAATGAGGGTGCGCCGTTGCCGCTTTACCGGAGAAACGGG
GGCCTCATACTGGGAGGCCT

Downstream 100 bases:

>100_bases
GGGAAACGCTCGGGAACTCCTGTCATTTTGCCATTGACTTCCCCGTCCGTGGAGGCCCTTAATGTGGATAAGGCAGGAGC
GTTTTTGCCTGCCTGAATAA

Product: histone family protein DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 90; Mature: 90

Protein sequence:

>90_residues
MNKTQFIRELQRELGNDVTSRQAEHALNAVLETIARAVRRRSLVKFRGFGTFRVKRRRARIVRHPENGGRLLVHESKTMK
FRPSSLLWKE

Sequences:

>Translated_90_residues
MNKTQFIRELQRELGNDVTSRQAEHALNAVLETIARAVRRRSLVKFRGFGTFRVKRRRARIVRHPENGGRLLVHESKTMK
FRPSSLLWKE
>Mature_90_residues
MNKTQFIRELQRELGNDVTSRQAEHALNAVLETIARAVRRRSLVKFRGFGTFRVKRRRARIVRHPENGGRLLVHESKTMK
FRPSSLLWKE

Specific function: Histone-Like DNA-Binding Protein Which Is Capable Of Wrapping DNA To Stabilize It, And Thus To Prevent Its Denaturation Under Extreme Environmental Conditions. [C]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 860 Molecules/Cell In: Growth-Phase, Minimal Media (Based on E. coli). 2040 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10641; Mature: 10641

Theoretical pI: Translated: 12.41; Mature: 12.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKTQFIRELQRELGNDVTSRQAEHALNAVLETIARAVRRRSLVKFRGFGTFRVKRRRAR
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
IVRHPENGGRLLVHESKTMKFRPSSLLWKE
HHCCCCCCCEEEEECCCCCEECCCCCCCCC
>Mature Secondary Structure
MNKTQFIRELQRELGNDVTSRQAEHALNAVLETIARAVRRRSLVKFRGFGTFRVKRRRAR
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
IVRHPENGGRLLVHESKTMKFRPSSLLWKE
HHCCCCCCCEEEEECCCCCEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA