Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is aga [H]
Identifier: 187735357
GI number: 187735357
Start: 1018288
End: 1020438
Strand: Direct
Name: aga [H]
Synonym: Amuc_0855
Alternate gene names: 187735357
Gene position: 1018288-1020438 (Clockwise)
Preceding gene: 187735356
Following gene: 187735365
Centisome position: 38.22
GC content: 59.32
Gene sequence:
>2151_bases ATGATTCCGGATTCCGTTCATTTGCTGACCCGTTCCTCTCAGATGACCCTGTACAAAGATGAACAGGGCCGTGTGCGCCG CGCCTATTACGGACCGAAGCTGCGTGAACCGGAGGATGCCCTGGAAAACGCCGCGGATGCTCCTCTCCTGTATTCCTCCC TGGCGGATTCCGTAACAGGGCTTCCCAATGCGTCCGGCGAGTACTGCATTTGCGTAACCCAGGCGGACGGGGCCCTTTCC CTGAGCCTGGAATGCCTGGATTGGGAAGTGCTGGAACTGGATGACGACCGGGAAGAAGCCGTCTTCTATGGGAAGGACCC TTCCTACCCTGTGCGGGTGGAAATCCACGTGCGCTCCCACAGGGAATCGGACACTTTTCTGCAATGGGCGGTGATTCGGA ACGAAGGGAAAGAAGGCATCCGCCTGCACCGCGCGGCATCCGCACAGCTGGGTTTGCGCGCAGAACGGTATTTCGTCACC AGCTTCCGCGGCACCTGGGGCGGCGAGTCCCTGATGAGTGAGGAAGAAGTGGCCCGGGGGCATGAACTTGCCCTGGTATC CGGAACCGGCACCCGCACCGCCCAGGAGGGAAGCCCCGGATTCATCATCTCTCTGGACGGTCCGGCGCGGGAGGATTCCG GGGAGGTGGTTCTGGGGGCGCTGGCATGGTCCGGCAATTACCGGATATGGTTCCGGCACAGCCCGTATCATTACCTTTTT GCCGGAGCGGGGCTGGATATGGCTCCCGCGCCCTATCTGCTGGACGGCGGCGGTGTGTTCAAGACGCCGCCCCTCATTCT GGCGCACAGTAAAAACGGCAAGGGAGAGGCCTCCCGGCGCATCCACCGCTGGGCGCGCCGTTACGGCCTGCGCGGTGGAG AATCAGAGAGGCCGACCTTGCTGAATTCCTGGGAGGGGGTGTATTTTACCTTTACGGAAAAAGTGCTGCACGGCATGATG AAACGTGCGGCAGACTTGGGGATAGAGCTTTTCGTGCTGGATGACGGCTGGTTTGGCGGCCGGTTCCCCCGCAATGACGC CCGTGCCGGATTGGGGGACTGGCAGGTTAACCGCGCTAAATTGCCTCATGGACTGGAAGACCTCATTCGCCAGGCGGAAA AACTGGGAATACGCTTCGGCATCTGGGTGGAGCCGGAAATGGTGAACCCTCATTCGGAGCTTTATCAGAACCATCCGGAG TGGGCCATCGGTCTCCCGCATCGGGAAAACAGGCTGGAACGCAGCCAGTATTTGCTGGACCTGAGCAATCCTCATGTATG CAGGTACATTCTTGATGCCATGCGGAAGCTGCTTGGGGAGCATCCGGGTATTTCCTACGTCAAATGGGATTGCAACCGCA AAATTTCCGACCCCGGCTCTCCCTGGCTGGATGCCTGCCGCCAGGGGAATCTGCCCATTGACTATGTGCGGGGCTATGAA CGTATTCTTGAGACGCTGGCGGCGGAATTCCCGGATGTGATATTCCAGGCCTGTTCCTCCGGAGGAGGCCGCGCCGACTA TGGAACCATGCGGAAGCATCATGAATTCTGGACGTCCGACAACACGGACGCTTATGAACGCGTGTTCATGCAGTGGGGCA TAGGCCACCTGTTCCCGGCTATTTCCATGGCCGCCCATGTGACCGCCTCCCCCAACCACCAGACGGGCCGCTCTGCTCCG CTCAAATTCCGGTTTGACGTGGCCATGTCCGGCCGGCTTGGTTTTGAACTCCAGCCATGTGACATGACGGAGGAGGACAT GGTTTTTTCCAAACGGGCTCTGGCGGAATACAAGCGCATCCGCCCCGTAGTCCAGTTCGGTGACTTGTACCGGCTTTCCT CCCCGTATGAAAGCCGGGTGGCCTCCCTGATGTATGTATGCGGAAAACGGGCTGTCGTTTTCGCCTGGCTGATGGATAAA TGGCTGGCGGATTCCCCTCCGCCCCTGCGCCTGAAAGGCCTGAATTTTTCCGCTAGGTACTTGGTGCGGGAAATCAACAT GAATGAAGACGGCTCTCTCACGGATGTTCACGAACGAAGGCTGGGAGGCGACTTTCTGATGGACGCCGGCATCCGCATCC GCTGGAAAAAGGCCTTCCAGTCCGTCTGCCTGGAGGTGGTGGAAACAAACCCTGATGCTCCGGCTTCATGA
Upstream 100 bases:
>100_bases GCCATTGACTTCCCCGTCCGTGGAGGCCCTTAATGTGGATAAGGCAGGAGCGTTTTTGCCTGCCTGAATAAGTAACTGGC CCTTTCCGCATTTGCCGATC
Downstream 100 bases:
>100_bases TAAAAAGCTGTAGACTTTCCGCCAGCAGCCTGATGTTCTTTTTTCATAGTGGGAACCGGCGTTTGGCGCAGGTTTCATCC CCGCTTTGTTAATATTGTGA
Product: glycoside hydrolase clan GH-D
Products: NA
Alternate protein names: Melibiase [H]
Number of amino acids: Translated: 716; Mature: 716
Protein sequence:
>716_residues MIPDSVHLLTRSSQMTLYKDEQGRVRRAYYGPKLREPEDALENAADAPLLYSSLADSVTGLPNASGEYCICVTQADGALS LSLECLDWEVLELDDDREEAVFYGKDPSYPVRVEIHVRSHRESDTFLQWAVIRNEGKEGIRLHRAASAQLGLRAERYFVT SFRGTWGGESLMSEEEVARGHELALVSGTGTRTAQEGSPGFIISLDGPAREDSGEVVLGALAWSGNYRIWFRHSPYHYLF AGAGLDMAPAPYLLDGGGVFKTPPLILAHSKNGKGEASRRIHRWARRYGLRGGESERPTLLNSWEGVYFTFTEKVLHGMM KRAADLGIELFVLDDGWFGGRFPRNDARAGLGDWQVNRAKLPHGLEDLIRQAEKLGIRFGIWVEPEMVNPHSELYQNHPE WAIGLPHRENRLERSQYLLDLSNPHVCRYILDAMRKLLGEHPGISYVKWDCNRKISDPGSPWLDACRQGNLPIDYVRGYE RILETLAAEFPDVIFQACSSGGGRADYGTMRKHHEFWTSDNTDAYERVFMQWGIGHLFPAISMAAHVTASPNHQTGRSAP LKFRFDVAMSGRLGFELQPCDMTEEDMVFSKRALAEYKRIRPVVQFGDLYRLSSPYESRVASLMYVCGKRAVVFAWLMDK WLADSPPPLRLKGLNFSARYLVREINMNEDGSLTDVHERRLGGDFLMDAGIRIRWKKAFQSVCLEVVETNPDAPAS
Sequences:
>Translated_716_residues MIPDSVHLLTRSSQMTLYKDEQGRVRRAYYGPKLREPEDALENAADAPLLYSSLADSVTGLPNASGEYCICVTQADGALS LSLECLDWEVLELDDDREEAVFYGKDPSYPVRVEIHVRSHRESDTFLQWAVIRNEGKEGIRLHRAASAQLGLRAERYFVT SFRGTWGGESLMSEEEVARGHELALVSGTGTRTAQEGSPGFIISLDGPAREDSGEVVLGALAWSGNYRIWFRHSPYHYLF AGAGLDMAPAPYLLDGGGVFKTPPLILAHSKNGKGEASRRIHRWARRYGLRGGESERPTLLNSWEGVYFTFTEKVLHGMM KRAADLGIELFVLDDGWFGGRFPRNDARAGLGDWQVNRAKLPHGLEDLIRQAEKLGIRFGIWVEPEMVNPHSELYQNHPE WAIGLPHRENRLERSQYLLDLSNPHVCRYILDAMRKLLGEHPGISYVKWDCNRKISDPGSPWLDACRQGNLPIDYVRGYE RILETLAAEFPDVIFQACSSGGGRADYGTMRKHHEFWTSDNTDAYERVFMQWGIGHLFPAISMAAHVTASPNHQTGRSAP LKFRFDVAMSGRLGFELQPCDMTEEDMVFSKRALAEYKRIRPVVQFGDLYRLSSPYESRVASLMYVCGKRAVVFAWLMDK WLADSPPPLRLKGLNFSARYLVREINMNEDGSLTDVHERRLGGDFLMDAGIRIRWKKAFQSVCLEVVETNPDAPAS >Mature_716_residues MIPDSVHLLTRSSQMTLYKDEQGRVRRAYYGPKLREPEDALENAADAPLLYSSLADSVTGLPNASGEYCICVTQADGALS LSLECLDWEVLELDDDREEAVFYGKDPSYPVRVEIHVRSHRESDTFLQWAVIRNEGKEGIRLHRAASAQLGLRAERYFVT SFRGTWGGESLMSEEEVARGHELALVSGTGTRTAQEGSPGFIISLDGPAREDSGEVVLGALAWSGNYRIWFRHSPYHYLF AGAGLDMAPAPYLLDGGGVFKTPPLILAHSKNGKGEASRRIHRWARRYGLRGGESERPTLLNSWEGVYFTFTEKVLHGMM KRAADLGIELFVLDDGWFGGRFPRNDARAGLGDWQVNRAKLPHGLEDLIRQAEKLGIRFGIWVEPEMVNPHSELYQNHPE WAIGLPHRENRLERSQYLLDLSNPHVCRYILDAMRKLLGEHPGISYVKWDCNRKISDPGSPWLDACRQGNLPIDYVRGYE RILETLAAEFPDVIFQACSSGGGRADYGTMRKHHEFWTSDNTDAYERVFMQWGIGHLFPAISMAAHVTASPNHQTGRSAP LKFRFDVAMSGRLGFELQPCDMTEEDMVFSKRALAEYKRIRPVVQFGDLYRLSSPYESRVASLMYVCGKRAVVFAWLMDK WLADSPPPLRLKGLNFSARYLVREINMNEDGSLTDVHERRLGGDFLMDAGIRIRWKKAFQSVCLEVVETNPDAPAS
Specific function: Unknown
COG id: COG3345
COG function: function code G; Alpha-galactosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 36 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR002252 - InterPro: IPR017853 - InterPro: IPR000111 [H]
Pfam domain/function: PF02065 Melibiase [H]
EC number: =3.2.1.22 [H]
Molecular weight: Translated: 80812; Mature: 80812
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: PS00512 ALPHA_GALACTOSIDASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIPDSVHLLTRSSQMTLYKDEQGRVRRAYYGPKLREPEDALENAADAPLLYSSLADSVTG CCCCCEEEEECCCCEEEEECCCCCEEEECCCCCCCCHHHHHHCCCCCCHHHHHHHHHHCC LPNASGEYCICVTQADGALSLSLECLDWEVLELDDDREEAVFYGKDPSYPVRVEIHVRSH CCCCCCCEEEEEEECCCCEEEEEEEECEEEEECCCCCCCEEEECCCCCCCEEEEEEEECC RESDTFLQWAVIRNEGKEGIRLHRAASAQLGLRAERYFVTSFRGTWGGESLMSEEEVARG CCCCCEEEEEEEECCCCCCEEEEEHHHHHCCCCEEEEEEEEECCCCCCHHHCCHHHHHCC HELALVSGTGTRTAQEGSPGFIISLDGPAREDSGEVVLGALAWSGNYRIWFRHSPYHYLF CEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEEEECCCEEEEEEECCCEEEE AGAGLDMAPAPYLLDGGGVFKTPPLILAHSKNGKGEASRRIHRWARRYGLRGGESERPTL EECCCCCCCCCEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCE LNSWEGVYFTFTEKVLHGMMKRAADLGIELFVLDDGWFGGRFPRNDARAGLGDWQVNRAK ECCCCCEEEEEHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHC LPHGLEDLIRQAEKLGIRFGIWVEPEMVNPHSELYQNHPEWAIGLPHRENRLERSQYLLD CCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHCCCCEEEECCCHHHHHHHHHEEEE LSNPHVCRYILDAMRKLLGEHPGISYVKWDCNRKISDPGSPWLDACRQGNLPIDYVRGYE CCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCHHHHHHHH RILETLAAEFPDVIFQACSSGGGRADYGTMRKHHEFWTSDNTDAYERVFMQWGIGHLFPA HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHH ISMAAHVTASPNHQTGRSAPLKFRFDVAMSGRLGFELQPCDMTEEDMVFSKRALAEYKRI HHHHHEEECCCCCCCCCCCCEEEEEEEEECCCCCCEECCCCCCHHHHHHHHHHHHHHHHH RPVVQFGDLYRLSSPYESRVASLMYVCGKRAVVFAWLMDKWLADSPPPLRLKGLNFSARY HHHHHHCCHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCHHEE LVREINMNEDGSLTDVHERRLGGDFLMDAGIRIRWKKAFQSVCLEVVETNPDAPAS HEEECCCCCCCCCCHHHHHHCCCCEEECCCCEEEEHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MIPDSVHLLTRSSQMTLYKDEQGRVRRAYYGPKLREPEDALENAADAPLLYSSLADSVTG CCCCCEEEEECCCCEEEEECCCCCEEEECCCCCCCCHHHHHHCCCCCCHHHHHHHHHHCC LPNASGEYCICVTQADGALSLSLECLDWEVLELDDDREEAVFYGKDPSYPVRVEIHVRSH CCCCCCCEEEEEEECCCCEEEEEEEECEEEEECCCCCCCEEEECCCCCCCEEEEEEEECC RESDTFLQWAVIRNEGKEGIRLHRAASAQLGLRAERYFVTSFRGTWGGESLMSEEEVARG CCCCCEEEEEEEECCCCCCEEEEEHHHHHCCCCEEEEEEEEECCCCCCHHHCCHHHHHCC HELALVSGTGTRTAQEGSPGFIISLDGPAREDSGEVVLGALAWSGNYRIWFRHSPYHYLF CEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEEEECCCEEEEEEECCCEEEE AGAGLDMAPAPYLLDGGGVFKTPPLILAHSKNGKGEASRRIHRWARRYGLRGGESERPTL EECCCCCCCCCEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCE LNSWEGVYFTFTEKVLHGMMKRAADLGIELFVLDDGWFGGRFPRNDARAGLGDWQVNRAK ECCCCCEEEEEHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHC LPHGLEDLIRQAEKLGIRFGIWVEPEMVNPHSELYQNHPEWAIGLPHRENRLERSQYLLD CCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHCCCCEEEECCCHHHHHHHHHEEEE LSNPHVCRYILDAMRKLLGEHPGISYVKWDCNRKISDPGSPWLDACRQGNLPIDYVRGYE CCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCHHHHHHHH RILETLAAEFPDVIFQACSSGGGRADYGTMRKHHEFWTSDNTDAYERVFMQWGIGHLFPA HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHH ISMAAHVTASPNHQTGRSAPLKFRFDVAMSGRLGFELQPCDMTEEDMVFSKRALAEYKRI HHHHHEEECCCCCCCCCCCCEEEEEEEEECCCCCCEECCCCCCHHHHHHHHHHHHHHHHH RPVVQFGDLYRLSSPYESRVASLMYVCGKRAVVFAWLMDKWLADSPPPLRLKGLNFSARY HHHHHHCCHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCHHEE LVREINMNEDGSLTDVHERRLGGDFLMDAGIRIRWKKAFQSVCLEVVETNPDAPAS HEEECCCCCCCCCCHHHHHHCCCCEEECCCCEEEEHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1649890; 1660918; 12397186 [H]