Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is comEC [H]
Identifier: 187735350
GI number: 187735350
Start: 1010391
End: 1012460
Strand: Direct
Name: comEC [H]
Synonym: Amuc_0848
Alternate gene names: 187735350
Gene position: 1010391-1012460 (Clockwise)
Preceding gene: 187735349
Following gene: 187735354
Centisome position: 37.93
GC content: 61.35
Gene sequence:
>2070_bases ATGACGGCATCTGCTCCCTTGCTGATTCCGGCTTTGTCCCTGCTGTGCGCCTGCGCGGCAATGGATGTTTCCCTTTGGCT CTGGATTCCATGCTTCTGCCTGGCGTCGCTGCCGTGTTTTTTACGTGCGCCCTCCATGGGGGTGCTTGCCGTTGCCCTGG CGATGTGGGCCGCCGTATATCTTTTCGCGTATGAACGGGAATACGCAGGCGTTCCCGTGGAAGCGGGGAGAGTCATGGTT ATGGAAGGCTCCGTTGAGGCTGTTTCCGGAAAATCCGTGTTGTTTCGCCCGGATGGTTCCCGGTGGCTGTACGCGGTTTC CTCCCGTGACGGGGCCTGCCCTCTGGAGGCAGGGGAACGCTACCGGATCAGGGGAGAGGCGTATCCGCTTCAGGCGCCGT GCGGTCCCGGCATCTTTGACCGGGAGCGTTGGGGGTACCTGCACGGCATCATCGCCGGAATCCGGCTGGATGAGTACTGC CGGAACGGGCCGGGAGACTGGCGCAGCCGTTTCCGGGCTTTTTCCCTGCGGCTCCGGGAAAGGGCTGCCTCCCTGCTCAG GGAGGGCGCCCCTCCGGATGATGAGGCCCGGCAGGTGATGGTTTCCGCCGTGCTTGGGGACAAGACGGACGCGAGGCTGG AAACGATGGCGAAGTTTCTGGAAAGCGGCTGCATGCATGTATTCGCTGTCAGCGGCATGCATGTGGGCGTGGCCGCCATG CTGGTTCTGGGTATGCTGAGGCTTTTGCATGTGCACCCCCGTGCGGCCCGGCTGGCCTGCATCCTTTTGCTGGCGGCGTA CGTGTTCGTGACCGGGATGTCCGCTTCCGCCCTGCGGGCGTTCATCATGGCGACAGTCTGGCTTCTGGCGTTTGTGCTGC GCAGAAAGGGACATCCGGCCAATATTCTGGCACTCGCTTTCATCCTCCTCTGTTTAATGAACCCGCTCCAGGTTTTCCAG CCGGGGTTCCAGCTTTCTTTTTGCGTTTTTGCCGTCATTGTCTGCCTGGCGGAATGGCTCAGTCGGGAAAAGCCCCTGTG GTCGCCGGACCCGTTTATTCCTCCCCGGATTTATCATGCGCGGGAAAGATTCCTGGTGCGGCTGGAAAAAGCATGCCGCG GCGCGCTGATCGTCTCCGTGGGGGCGTGGCTGGCTTCCATTCCCCTGACGGCATGGCACTTCGGAACCTGGAACCTGTAT GCTCCCTTGACCAATTTGTGCCTGAGCGTACTTGTCTTTCCCCTTATGGGCATTTCCCTGTCCGGGCTGATGTTCGCGTG GTGCCCGTGGATGCTGCATGTCTGTAATACGGCCGCTTCCTGGCTGGCGTCCGCCATGCTGTCCGTAGCCGGGGGAGTGG CTTCCCTGCCGTACAGTTATCTTTCTTCCGCACCGCCTTCCGGGGAAAATGAAGCTGTTATCGTTCCCTTGCAGAAGGAT GCCTGGGCCACAGTCATTTCCAATCCCGCATTGGTTGTGGGAAGCGGAACGGAAGATGCGGTGCGGTACACCCTCCTTCC CGTGCTGAAGGCGCGCAGTGTCCGGCCCTGCGGCATGCTGTCCTGGGGAAACGGCAAGGCAGAACGGGCCGGAGAGAAAG AACTGGAGAAGGAATATCCCGGAATCCGGAACTGGGGCGCGGAGCCCGGGGAATGTCCCGTCCGGCAATGGAGGTTACGG CCGGGCAATGCACTTGTGCTGGAAGATTTTCCTGTCCCGTTGCGCACGGGAATCCGTCAGGACCGGAGCCGGGTGTTGTC ATGGGAATGCCGCGGGCGGCGGTTCCTGATGATAGGGAATACCGGGTTTTCTTCCCTGGCGCGCGCGGAAAAAACACCGC GGGCGGACGTATTGCTCATCGGGCATCATCCGCGCGACCCGGTGGACAGCGCAGCGTGGATCAGGGCCACAGGCGCCCGC GCGGTCATTTTCACGACGGAGCATGAATGCCCCGTACCGGAGGGAACAGCCGTATACCGTCTCCGGGAAACCGGAAGCCT CTATCTGCGAATGGAAGAAAAGAGCGTGCAAATCATCCCCTGGAGGGGCATGGAACGCCGTACAGAGTAA
Upstream 100 bases:
>100_bases TTCCGTCCTCCCGCTGGAGCCGGATGGTGCGGATGCCATGCCGTAAGGTTCACCCTGCATGGAAGAAGTTCGGCGTGTTC TGCGTCCGTGGCCGGAACGG
Downstream 100 bases:
>100_bases ATCCCGTGCTTTCCTCAATGCGGATGGGAAGGATCTCTCCCGCCAGGTCAGGGGCGGCATCCACCATGACGGGCTTGTTC TGGGAGGTCCGGCCGGAGAG
Product: ComEC/Rec2-related protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 689; Mature: 688
Protein sequence:
>689_residues MTASAPLLIPALSLLCACAAMDVSLWLWIPCFCLASLPCFLRAPSMGVLAVALAMWAAVYLFAYEREYAGVPVEAGRVMV MEGSVEAVSGKSVLFRPDGSRWLYAVSSRDGACPLEAGERYRIRGEAYPLQAPCGPGIFDRERWGYLHGIIAGIRLDEYC RNGPGDWRSRFRAFSLRLRERAASLLREGAPPDDEARQVMVSAVLGDKTDARLETMAKFLESGCMHVFAVSGMHVGVAAM LVLGMLRLLHVHPRAARLACILLLAAYVFVTGMSASALRAFIMATVWLLAFVLRRKGHPANILALAFILLCLMNPLQVFQ PGFQLSFCVFAVIVCLAEWLSREKPLWSPDPFIPPRIYHARERFLVRLEKACRGALIVSVGAWLASIPLTAWHFGTWNLY APLTNLCLSVLVFPLMGISLSGLMFAWCPWMLHVCNTAASWLASAMLSVAGGVASLPYSYLSSAPPSGENEAVIVPLQKD AWATVISNPALVVGSGTEDAVRYTLLPVLKARSVRPCGMLSWGNGKAERAGEKELEKEYPGIRNWGAEPGECPVRQWRLR PGNALVLEDFPVPLRTGIRQDRSRVLSWECRGRRFLMIGNTGFSSLARAEKTPRADVLLIGHHPRDPVDSAAWIRATGAR AVIFTTEHECPVPEGTAVYRLRETGSLYLRMEEKSVQIIPWRGMERRTE
Sequences:
>Translated_689_residues MTASAPLLIPALSLLCACAAMDVSLWLWIPCFCLASLPCFLRAPSMGVLAVALAMWAAVYLFAYEREYAGVPVEAGRVMV MEGSVEAVSGKSVLFRPDGSRWLYAVSSRDGACPLEAGERYRIRGEAYPLQAPCGPGIFDRERWGYLHGIIAGIRLDEYC RNGPGDWRSRFRAFSLRLRERAASLLREGAPPDDEARQVMVSAVLGDKTDARLETMAKFLESGCMHVFAVSGMHVGVAAM LVLGMLRLLHVHPRAARLACILLLAAYVFVTGMSASALRAFIMATVWLLAFVLRRKGHPANILALAFILLCLMNPLQVFQ PGFQLSFCVFAVIVCLAEWLSREKPLWSPDPFIPPRIYHARERFLVRLEKACRGALIVSVGAWLASIPLTAWHFGTWNLY APLTNLCLSVLVFPLMGISLSGLMFAWCPWMLHVCNTAASWLASAMLSVAGGVASLPYSYLSSAPPSGENEAVIVPLQKD AWATVISNPALVVGSGTEDAVRYTLLPVLKARSVRPCGMLSWGNGKAERAGEKELEKEYPGIRNWGAEPGECPVRQWRLR PGNALVLEDFPVPLRTGIRQDRSRVLSWECRGRRFLMIGNTGFSSLARAEKTPRADVLLIGHHPRDPVDSAAWIRATGAR AVIFTTEHECPVPEGTAVYRLRETGSLYLRMEEKSVQIIPWRGMERRTE >Mature_688_residues TASAPLLIPALSLLCACAAMDVSLWLWIPCFCLASLPCFLRAPSMGVLAVALAMWAAVYLFAYEREYAGVPVEAGRVMVM EGSVEAVSGKSVLFRPDGSRWLYAVSSRDGACPLEAGERYRIRGEAYPLQAPCGPGIFDRERWGYLHGIIAGIRLDEYCR NGPGDWRSRFRAFSLRLRERAASLLREGAPPDDEARQVMVSAVLGDKTDARLETMAKFLESGCMHVFAVSGMHVGVAAML VLGMLRLLHVHPRAARLACILLLAAYVFVTGMSASALRAFIMATVWLLAFVLRRKGHPANILALAFILLCLMNPLQVFQP GFQLSFCVFAVIVCLAEWLSREKPLWSPDPFIPPRIYHARERFLVRLEKACRGALIVSVGAWLASIPLTAWHFGTWNLYA PLTNLCLSVLVFPLMGISLSGLMFAWCPWMLHVCNTAASWLASAMLSVAGGVASLPYSYLSSAPPSGENEAVIVPLQKDA WATVISNPALVVGSGTEDAVRYTLLPVLKARSVRPCGMLSWGNGKAERAGEKELEKEYPGIRNWGAEPGECPVRQWRLRP GNALVLEDFPVPLRTGIRQDRSRVLSWECRGRRFLMIGNTGFSSLARAEKTPRADVLLIGHHPRDPVDSAAWIRATGARA VIFTTEHECPVPEGTAVYRLRETGSLYLRMEEKSVQIIPWRGMERRTE
Specific function: The comE operon is required for the binding and uptake of transforming DNA. ComEC is required for internalization but is dispensable for DNA binding [H]
COG id: COG0658
COG function: function code R; Predicted membrane metal-binding protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae REC2, N.gonorrhoeae ComA and E.coli YcaI [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR004477 - InterPro: IPR004797 [H]
Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 76043; Mature: 75912
Theoretical pI: Translated: 8.76; Mature: 8.76
Prosite motif: PS00041 HTH_ARAC_FAMILY_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTASAPLLIPALSLLCACAAMDVSLWLWIPCFCLASLPCFLRAPSMGVLAVALAMWAAVY CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHH LFAYEREYAGVPVEAGRVMVMEGSVEAVSGKSVLFRPDGSRWLYAVSSRDGACPLEAGER HHHHHHHHCCCCCCCCEEEEEECCEEEECCCEEEECCCCCCEEEEECCCCCCCCCCCCCE YRIRGEAYPLQAPCGPGIFDRERWGYLHGIIAGIRLDEYCRNGPGDWRSRFRAFSLRLRE EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHH RAASLLREGAPPDDEARQVMVSAVLGDKTDARLETMAKFLESGCMHVFAVSGMHVGVAAM HHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH LVLGMLRLLHVHPRAARLACILLLAAYVFVTGMSASALRAFIMATVWLLAFVLRRKGHPA HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCH NILALAFILLCLMNPLQVFQPGFQLSFCVFAVIVCLAEWLSREKPLWSPDPFIPPRIYHA HHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH RERFLVRLEKACRGALIVSVGAWLASIPLTAWHFGTWNLYAPLTNLCLSVLVFPLMGISL HHHHHHHHHHHHCCEEEEHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHH SGLMFAWCPWMLHVCNTAASWLASAMLSVAGGVASLPYSYLSSAPPSGENEAVIVPLQKD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHCCCCCCCCCEEEEEECCC AWATVISNPALVVGSGTEDAVRYTLLPVLKARSVRPCGMLSWGNGKAERAGEKELEKEYP CHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHCCHHHHHHHCC GIRNWGAEPGECPVRQWRLRPGNALVLEDFPVPLRTGIRQDRSRVLSWECRGRRFLMIGN CCCCCCCCCCCCCHHHEECCCCCEEEEECCCCHHHHCCHHHHHHEEEEEECCCEEEEECC TGFSSLARAEKTPRADVLLIGHHPRDPVDSAAWIRATGARAVIFTTEHECPVPEGTAVYR CCHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHEEECCCEEEEEEECCCCCCCCCCEEEE LRETGSLYLRMEEKSVQIIPWRGMERRTE EECCCEEEEEEECCCEEEEECCCCCCCCC >Mature Secondary Structure TASAPLLIPALSLLCACAAMDVSLWLWIPCFCLASLPCFLRAPSMGVLAVALAMWAAVY CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHH LFAYEREYAGVPVEAGRVMVMEGSVEAVSGKSVLFRPDGSRWLYAVSSRDGACPLEAGER HHHHHHHHCCCCCCCCEEEEEECCEEEECCCEEEECCCCCCEEEEECCCCCCCCCCCCCE YRIRGEAYPLQAPCGPGIFDRERWGYLHGIIAGIRLDEYCRNGPGDWRSRFRAFSLRLRE EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHH RAASLLREGAPPDDEARQVMVSAVLGDKTDARLETMAKFLESGCMHVFAVSGMHVGVAAM HHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH LVLGMLRLLHVHPRAARLACILLLAAYVFVTGMSASALRAFIMATVWLLAFVLRRKGHPA HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCH NILALAFILLCLMNPLQVFQPGFQLSFCVFAVIVCLAEWLSREKPLWSPDPFIPPRIYHA HHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH RERFLVRLEKACRGALIVSVGAWLASIPLTAWHFGTWNLYAPLTNLCLSVLVFPLMGISL HHHHHHHHHHHHCCEEEEHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHH SGLMFAWCPWMLHVCNTAASWLASAMLSVAGGVASLPYSYLSSAPPSGENEAVIVPLQKD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHCCCCCCCCCEEEEEECCC AWATVISNPALVVGSGTEDAVRYTLLPVLKARSVRPCGMLSWGNGKAERAGEKELEKEYP CHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHCCHHHHHHHCC GIRNWGAEPGECPVRQWRLRPGNALVLEDFPVPLRTGIRQDRSRVLSWECRGRRFLMIGN CCCCCCCCCCCCCHHHEECCCCCEEEEECCCCHHHHCCHHHHHHEEEEEECCCEEEEECC TGFSSLARAEKTPRADVLLIGHHPRDPVDSAAWIRATGARAVIFTTEHECPVPEGTAVYR CCHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHEEECCCEEEEEEECCCCCCCCCCEEEE LRETGSLYLRMEEKSVQIIPWRGMERRTE EECCCEEEEEEECCCEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7968523; 8969508; 9384377 [H]