Definition Akkermansia muciniphila ATCC BAA-835, complete genome.
Accession NC_010655
Length 2,664,102

Click here to switch to the map view.

The map label for this gene is yhaM [H]

Identifier: 187735349

GI number: 187735349

Start: 1009272

End: 1010336

Strand: Direct

Name: yhaM [H]

Synonym: Amuc_0847

Alternate gene names: 187735349

Gene position: 1009272-1010336 (Clockwise)

Preceding gene: 187735348

Following gene: 187735350

Centisome position: 37.88

GC content: 59.72

Gene sequence:

>1065_bases
ATGGCACGCATGGAACAAGTCAGTCTCATGGAGTTGGGCAAGCTGGCCGCGGAAGGCCAGCTTGAAGCGGAAGTTTTTGC
CCAGATTGCCCAGTGCGCGCAGAAGATGACCAAGGGCAACAAGCCGTATCTGGATGTGTCTTTTGCCGATGCGGAAGGGA
CAATGGGACTGAAGGTGTGGGAGGATAAACCCTGGTTCCGGACGCTCGCTTCCCTGCCCCTCCGCAGTTTCGTGAGCCTG
CGCGGCCAATGGGCCAAGGGAGGGTTCGGCATGGAAGTTTCCGATCTGGACGTGCGGTTGCTGGACGAACGGGAAAAGGA
AAGCTTTCTGGCCGGTTCCGGAACCTTGAAGAAAAAGCAGGAAGCTGATCTGAAGGAAATTTGCGTACTCATCAAGGGCA
TGAATGATCCGCGCATACGCGCCCTGTGCATTGAATTCATTGAGCAGTTCGGGGAACGCCTCCAGCGCGCCGCCGCCGCC
CGCACCTACCATCACGCCCGCCGTGGCGGACTGGTGGAGCACGTAGCGGGGATGATGCGCACGGCCTCTGCCGTCTGCCA
GGCAAATCCGGGCCTGAACCGTGATCTTCTGCTGGCCGGGTGTCTGTTTCACGACTGCGGGAAGTTGTGGGAAAATTGCT
ACCCGAAGGAGGATTTTACGATGCCCTATTCGGAGGCCGGAGAACTGCTGGGCCATATTCCGCTGGGCATTGAACTGGTC
AACAATTTGTGGAAGCGCATCATGTCCCTTCCGGAAGCGGATTCCTGGAAGACGCTGGACCCTCCTTCCCCGGACGTGCG
CATGCACCTGCTGCACCTGATTGCGTCCCACCACGGGGAACTTGCCTTCGGCTCCCCCGTGTTTCCCAAAACGCCGGAAG
CGGTGGCCCTGCATTACATCGACAATCTGGACGCCAAGCTGGAAATGTTCCGCGGAGCTTATGAGACAAGCGAGGCCCTG
GCTCCCAGAGTGCTCCAGCGCAAGGCCCCCCTGCCTGCCAACGTTGTTCTTCCGCTGCCTTCCGTCCTCCCGCTGGAGCC
GGATGGTGCGGATGCCATGCCGTAA

Upstream 100 bases:

>100_bases
CCGTTGCCGAGCTGGGCGTATTGGGAAAATAAGCGGTTTCCTTTTTTTATTATCGTAGTCCTCCGGCGTTTTCTTGACGG
ATGGAGGGAAGAGGGGCAAG

Downstream 100 bases:

>100_bases
GGTTCACCCTGCATGGAAGAAGTTCGGCGTGTTCTGCGTCCGTGGCCGGAACGGATGACGGCATCTGCTCCCTTGCTGAT
TCCGGCTTTGTCCCTGCTGT

Product: metal dependent phosphohydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 353

Protein sequence:

>354_residues
MARMEQVSLMELGKLAAEGQLEAEVFAQIAQCAQKMTKGNKPYLDVSFADAEGTMGLKVWEDKPWFRTLASLPLRSFVSL
RGQWAKGGFGMEVSDLDVRLLDEREKESFLAGSGTLKKKQEADLKEICVLIKGMNDPRIRALCIEFIEQFGERLQRAAAA
RTYHHARRGGLVEHVAGMMRTASAVCQANPGLNRDLLLAGCLFHDCGKLWENCYPKEDFTMPYSEAGELLGHIPLGIELV
NNLWKRIMSLPEADSWKTLDPPSPDVRMHLLHLIASHHGELAFGSPVFPKTPEAVALHYIDNLDAKLEMFRGAYETSEAL
APRVLQRKAPLPANVVLPLPSVLPLEPDGADAMP

Sequences:

>Translated_354_residues
MARMEQVSLMELGKLAAEGQLEAEVFAQIAQCAQKMTKGNKPYLDVSFADAEGTMGLKVWEDKPWFRTLASLPLRSFVSL
RGQWAKGGFGMEVSDLDVRLLDEREKESFLAGSGTLKKKQEADLKEICVLIKGMNDPRIRALCIEFIEQFGERLQRAAAA
RTYHHARRGGLVEHVAGMMRTASAVCQANPGLNRDLLLAGCLFHDCGKLWENCYPKEDFTMPYSEAGELLGHIPLGIELV
NNLWKRIMSLPEADSWKTLDPPSPDVRMHLLHLIASHHGELAFGSPVFPKTPEAVALHYIDNLDAKLEMFRGAYETSEAL
APRVLQRKAPLPANVVLPLPSVLPLEPDGADAMP
>Mature_353_residues
ARMEQVSLMELGKLAAEGQLEAEVFAQIAQCAQKMTKGNKPYLDVSFADAEGTMGLKVWEDKPWFRTLASLPLRSFVSLR
GQWAKGGFGMEVSDLDVRLLDEREKESFLAGSGTLKKKQEADLKEICVLIKGMNDPRIRALCIEFIEQFGERLQRAAAAR
TYHHARRGGLVEHVAGMMRTASAVCQANPGLNRDLLLAGCLFHDCGKLWENCYPKEDFTMPYSEAGELLGHIPLGIELVN
NLWKRIMSLPEADSWKTLDPPSPDVRMHLLHLIASHHGELAFGSPVFPKTPEAVALHYIDNLDAKLEMFRGAYETSEALA
PRVLQRKAPLPANVVLPLPSVLPLEPDGADAMP

Specific function: Shows a 3'-5' exoribonuclease activity [H]

COG id: COG3481

COG function: function code R; Predicted HD-superfamily hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yhaM family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020873
- InterPro:   IPR003607
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR004365 [H]

Pfam domain/function: PF01336 tRNA_anti [H]

EC number: NA

Molecular weight: Translated: 39254; Mature: 39123

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARMEQVSLMELGKLAAEGQLEAEVFAQIAQCAQKMTKGNKPYLDVSFADAEGTMGLKVW
CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEE
EDKPWFRTLASLPLRSFVSLRGQWAKGGFGMEVSDLDVRLLDEREKESFLAGSGTLKKKQ
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCHHHHHHHHHHHHHHCCCCCCCHHH
EADLKEICVLIKGMNDPRIRALCIEFIEQFGERLQRAAAARTYHHARRGGLVEHVAGMMR
HCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
TASAVCQANPGLNRDLLLAGCLFHDCGKLWENCYPKEDFTMPYSEAGELLGHIPLGIELV
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHH
NNLWKRIMSLPEADSWKTLDPPSPDVRMHLLHLIASHHGELAFGSPVFPKTPEAVALHYI
HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHEEHHHH
DNLDAKLEMFRGAYETSEALAPRVLQRKAPLPANVVLPLPSVLPLEPDGADAMP
HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ARMEQVSLMELGKLAAEGQLEAEVFAQIAQCAQKMTKGNKPYLDVSFADAEGTMGLKVW
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEE
EDKPWFRTLASLPLRSFVSLRGQWAKGGFGMEVSDLDVRLLDEREKESFLAGSGTLKKKQ
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCHHHHHHHHHHHHHHCCCCCCCHHH
EADLKEICVLIKGMNDPRIRALCIEFIEQFGERLQRAAAARTYHHARRGGLVEHVAGMMR
HCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
TASAVCQANPGLNRDLLLAGCLFHDCGKLWENCYPKEDFTMPYSEAGELLGHIPLGIELV
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHH
NNLWKRIMSLPEADSWKTLDPPSPDVRMHLLHLIASHHGELAFGSPVFPKTPEAVALHYI
HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHEEHHHH
DNLDAKLEMFRGAYETSEALAPRVLQRKAPLPANVVLPLPSVLPLEPDGADAMP
HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA