Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is yhaM [H]
Identifier: 187735349
GI number: 187735349
Start: 1009272
End: 1010336
Strand: Direct
Name: yhaM [H]
Synonym: Amuc_0847
Alternate gene names: 187735349
Gene position: 1009272-1010336 (Clockwise)
Preceding gene: 187735348
Following gene: 187735350
Centisome position: 37.88
GC content: 59.72
Gene sequence:
>1065_bases ATGGCACGCATGGAACAAGTCAGTCTCATGGAGTTGGGCAAGCTGGCCGCGGAAGGCCAGCTTGAAGCGGAAGTTTTTGC CCAGATTGCCCAGTGCGCGCAGAAGATGACCAAGGGCAACAAGCCGTATCTGGATGTGTCTTTTGCCGATGCGGAAGGGA CAATGGGACTGAAGGTGTGGGAGGATAAACCCTGGTTCCGGACGCTCGCTTCCCTGCCCCTCCGCAGTTTCGTGAGCCTG CGCGGCCAATGGGCCAAGGGAGGGTTCGGCATGGAAGTTTCCGATCTGGACGTGCGGTTGCTGGACGAACGGGAAAAGGA AAGCTTTCTGGCCGGTTCCGGAACCTTGAAGAAAAAGCAGGAAGCTGATCTGAAGGAAATTTGCGTACTCATCAAGGGCA TGAATGATCCGCGCATACGCGCCCTGTGCATTGAATTCATTGAGCAGTTCGGGGAACGCCTCCAGCGCGCCGCCGCCGCC CGCACCTACCATCACGCCCGCCGTGGCGGACTGGTGGAGCACGTAGCGGGGATGATGCGCACGGCCTCTGCCGTCTGCCA GGCAAATCCGGGCCTGAACCGTGATCTTCTGCTGGCCGGGTGTCTGTTTCACGACTGCGGGAAGTTGTGGGAAAATTGCT ACCCGAAGGAGGATTTTACGATGCCCTATTCGGAGGCCGGAGAACTGCTGGGCCATATTCCGCTGGGCATTGAACTGGTC AACAATTTGTGGAAGCGCATCATGTCCCTTCCGGAAGCGGATTCCTGGAAGACGCTGGACCCTCCTTCCCCGGACGTGCG CATGCACCTGCTGCACCTGATTGCGTCCCACCACGGGGAACTTGCCTTCGGCTCCCCCGTGTTTCCCAAAACGCCGGAAG CGGTGGCCCTGCATTACATCGACAATCTGGACGCCAAGCTGGAAATGTTCCGCGGAGCTTATGAGACAAGCGAGGCCCTG GCTCCCAGAGTGCTCCAGCGCAAGGCCCCCCTGCCTGCCAACGTTGTTCTTCCGCTGCCTTCCGTCCTCCCGCTGGAGCC GGATGGTGCGGATGCCATGCCGTAA
Upstream 100 bases:
>100_bases CCGTTGCCGAGCTGGGCGTATTGGGAAAATAAGCGGTTTCCTTTTTTTATTATCGTAGTCCTCCGGCGTTTTCTTGACGG ATGGAGGGAAGAGGGGCAAG
Downstream 100 bases:
>100_bases GGTTCACCCTGCATGGAAGAAGTTCGGCGTGTTCTGCGTCCGTGGCCGGAACGGATGACGGCATCTGCTCCCTTGCTGAT TCCGGCTTTGTCCCTGCTGT
Product: metal dependent phosphohydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 354; Mature: 353
Protein sequence:
>354_residues MARMEQVSLMELGKLAAEGQLEAEVFAQIAQCAQKMTKGNKPYLDVSFADAEGTMGLKVWEDKPWFRTLASLPLRSFVSL RGQWAKGGFGMEVSDLDVRLLDEREKESFLAGSGTLKKKQEADLKEICVLIKGMNDPRIRALCIEFIEQFGERLQRAAAA RTYHHARRGGLVEHVAGMMRTASAVCQANPGLNRDLLLAGCLFHDCGKLWENCYPKEDFTMPYSEAGELLGHIPLGIELV NNLWKRIMSLPEADSWKTLDPPSPDVRMHLLHLIASHHGELAFGSPVFPKTPEAVALHYIDNLDAKLEMFRGAYETSEAL APRVLQRKAPLPANVVLPLPSVLPLEPDGADAMP
Sequences:
>Translated_354_residues MARMEQVSLMELGKLAAEGQLEAEVFAQIAQCAQKMTKGNKPYLDVSFADAEGTMGLKVWEDKPWFRTLASLPLRSFVSL RGQWAKGGFGMEVSDLDVRLLDEREKESFLAGSGTLKKKQEADLKEICVLIKGMNDPRIRALCIEFIEQFGERLQRAAAA RTYHHARRGGLVEHVAGMMRTASAVCQANPGLNRDLLLAGCLFHDCGKLWENCYPKEDFTMPYSEAGELLGHIPLGIELV NNLWKRIMSLPEADSWKTLDPPSPDVRMHLLHLIASHHGELAFGSPVFPKTPEAVALHYIDNLDAKLEMFRGAYETSEAL APRVLQRKAPLPANVVLPLPSVLPLEPDGADAMP >Mature_353_residues ARMEQVSLMELGKLAAEGQLEAEVFAQIAQCAQKMTKGNKPYLDVSFADAEGTMGLKVWEDKPWFRTLASLPLRSFVSLR GQWAKGGFGMEVSDLDVRLLDEREKESFLAGSGTLKKKQEADLKEICVLIKGMNDPRIRALCIEFIEQFGERLQRAAAAR TYHHARRGGLVEHVAGMMRTASAVCQANPGLNRDLLLAGCLFHDCGKLWENCYPKEDFTMPYSEAGELLGHIPLGIELVN NLWKRIMSLPEADSWKTLDPPSPDVRMHLLHLIASHHGELAFGSPVFPKTPEAVALHYIDNLDAKLEMFRGAYETSEALA PRVLQRKAPLPANVVLPLPSVLPLEPDGADAMP
Specific function: Shows a 3'-5' exoribonuclease activity [H]
COG id: COG3481
COG function: function code R; Predicted HD-superfamily hydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the yhaM family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020873 - InterPro: IPR003607 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR004365 [H]
Pfam domain/function: PF01336 tRNA_anti [H]
EC number: NA
Molecular weight: Translated: 39254; Mature: 39123
Theoretical pI: Translated: 6.19; Mature: 6.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARMEQVSLMELGKLAAEGQLEAEVFAQIAQCAQKMTKGNKPYLDVSFADAEGTMGLKVW CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEE EDKPWFRTLASLPLRSFVSLRGQWAKGGFGMEVSDLDVRLLDEREKESFLAGSGTLKKKQ CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCHHHHHHHHHHHHHHCCCCCCCHHH EADLKEICVLIKGMNDPRIRALCIEFIEQFGERLQRAAAARTYHHARRGGLVEHVAGMMR HCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH TASAVCQANPGLNRDLLLAGCLFHDCGKLWENCYPKEDFTMPYSEAGELLGHIPLGIELV HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHH NNLWKRIMSLPEADSWKTLDPPSPDVRMHLLHLIASHHGELAFGSPVFPKTPEAVALHYI HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHEEHHHH DNLDAKLEMFRGAYETSEALAPRVLQRKAPLPANVVLPLPSVLPLEPDGADAMP HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCC >Mature Secondary Structure ARMEQVSLMELGKLAAEGQLEAEVFAQIAQCAQKMTKGNKPYLDVSFADAEGTMGLKVW CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEE EDKPWFRTLASLPLRSFVSLRGQWAKGGFGMEVSDLDVRLLDEREKESFLAGSGTLKKKQ CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCHHHHHHHHHHHHHHCCCCCCCHHH EADLKEICVLIKGMNDPRIRALCIEFIEQFGERLQRAAAARTYHHARRGGLVEHVAGMMR HCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH TASAVCQANPGLNRDLLLAGCLFHDCGKLWENCYPKEDFTMPYSEAGELLGHIPLGIELV HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHH NNLWKRIMSLPEADSWKTLDPPSPDVRMHLLHLIASHHGELAFGSPVFPKTPEAVALHYI HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHEEHHHH DNLDAKLEMFRGAYETSEALAPRVLQRKAPLPANVVLPLPSVLPLEPDGADAMP HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA