Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is fieF [H]
Identifier: 187735216
GI number: 187735216
Start: 837527
End: 838957
Strand: Direct
Name: fieF [H]
Synonym: Amuc_0710
Alternate gene names: 187735216
Gene position: 837527-838957 (Clockwise)
Preceding gene: 187735213
Following gene: 187735218
Centisome position: 31.44
GC content: 57.02
Gene sequence:
>1431_bases ATGGAACAAGCAGCGCACCAGGAAAAATCACATGCGGCCCTTTCCTCCGTCCTGTGGTCCGCCTTTTTAACGGTCATCAA GCTCTGGGCCGGCATTGTAACCGGCAGCCTCGGCATCATTTCCGAAGCCCTGCACAGCGGGCTGGACCTGATGGCTGCGG CCATGACTTTTTACGCCGTAAAAGTGGCGTCCCGCCCTGCGGACGAAAGCCACCCCTACGGGCACGAAAAGGTGGAGAAT CTTTCCGCCCTGGCGGAAACAGCCCTCCTTTTAGTTACCTGCGCCTGGATTGTCTGGGAGGCTGTGGACCGTCTGTTCTA CAATGAGGCGGAGATTACCCTCACCTGGTGGGCTTTTGCCGTAGTGGCCGTCTCCCTGCTGGTAGATGTGAACCGTTCCG CCATGCTCCGCCGGATAGCCAAAAAGCACAAAAGCCAGGCCCTGGAAGCGGATGCACTTCACTTTACCACGGATATCTGG TCTTCCGCAGTCGTGCTCCTGGGTCTTTTCTGCATCTGGCTGGCCCATCTGGTCCCTGCGGAATCAGCCTGGCACGGCCT CCTGGAGAGGGCGGATGCCATTGCGGCCCTGTTTGTGGCGGCTCTGGTTTGTTCCGTGGCTTTCGGCCTTGCCAAACGTT CCATCCACGCCCTGATGGACGGCGGTTCTTCCTCCCTGACGCGGCAGGTGCTGGACGCCATGAAAAAGAATGCCCCGGAT TATCCGGTCAAACGCATCCGCCTGCGTGACGGAGGCTCGCGCATCTTTGTAGAGCTGGATGTGGAAGCGCCTGCGGAACT GCACGTGGATGACGCCCATGATGTGGCGGAATCCATTGAAGGCATTGTAAAGCATGAATTGCCGGAAGCGGACGTCATCG TCCATATCGAACCGGCGCGGGAGAATCTTTCCAATATGGAGCCGGACATGATTATCCACCGGCTGGCCTTGCGCCACCAT GTCCGCATTCACGGTTTTTATGCAGGCCACGGCAAACAGGCCCCCTGTTATTTCATGGATGTGGAAATTCCGGCGGATTG GCCCCTGGAACGCGGCTACCATGTGGTGGAGGCTTTCAGGGATTCCATTCTGCATGAACTCAAGCCGGAAAAGGTAATTT GCCGCATTGAACCGGATTGCCGCGACATGGAAACAGGCGCCATTGCGGAACAGGTTTCTCCGGAAGAAGTGCGCCTGAAG GTAAATCTCATTCTCCAGCAGCACAGAAACATCCGCAAGATCCTCAAGCTGGACCTGACCAGGGAGGCCAATTTCCCAAC CTTGACCTGCGTGTGTTCCGTGGACGCCTCCCTGACTATCCGGGAATGCCACCAGATCGCCTCGCAGCTGGAAAACCAGA TAGAAAACGCACTACACCACCTAGGGCGCGTTACCGTCATTCTTAAACCGTCCAAGCAGAACAGAAATTGA
Upstream 100 bases:
>100_bases CGTCATGGGCCAAAGCCTGAGTTCTAACGCCGCCTCTGTTATCATTGACTAAGAAAGGGAGGCGGGCTTAGATATGCCCT TCTTTCTTTTTCCCTGTCTT
Downstream 100 bases:
>100_bases ATGACTGTTGCCGGATTCCCGTAAAAACATGTTCCGAATCCGGGAAGGAGAAACGGTTTCCATTCCGGGCATGGGAACCT CCGCCCGGACAAAGCGGAGC
Product: cation diffusion facilitator family transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 476; Mature: 476
Protein sequence:
>476_residues MEQAAHQEKSHAALSSVLWSAFLTVIKLWAGIVTGSLGIISEALHSGLDLMAAAMTFYAVKVASRPADESHPYGHEKVEN LSALAETALLLVTCAWIVWEAVDRLFYNEAEITLTWWAFAVVAVSLLVDVNRSAMLRRIAKKHKSQALEADALHFTTDIW SSAVVLLGLFCIWLAHLVPAESAWHGLLERADAIAALFVAALVCSVAFGLAKRSIHALMDGGSSSLTRQVLDAMKKNAPD YPVKRIRLRDGGSRIFVELDVEAPAELHVDDAHDVAESIEGIVKHELPEADVIVHIEPARENLSNMEPDMIIHRLALRHH VRIHGFYAGHGKQAPCYFMDVEIPADWPLERGYHVVEAFRDSILHELKPEKVICRIEPDCRDMETGAIAEQVSPEEVRLK VNLILQQHRNIRKILKLDLTREANFPTLTCVCSVDASLTIRECHQIASQLENQIENALHHLGRVTVILKPSKQNRN
Sequences:
>Translated_476_residues MEQAAHQEKSHAALSSVLWSAFLTVIKLWAGIVTGSLGIISEALHSGLDLMAAAMTFYAVKVASRPADESHPYGHEKVEN LSALAETALLLVTCAWIVWEAVDRLFYNEAEITLTWWAFAVVAVSLLVDVNRSAMLRRIAKKHKSQALEADALHFTTDIW SSAVVLLGLFCIWLAHLVPAESAWHGLLERADAIAALFVAALVCSVAFGLAKRSIHALMDGGSSSLTRQVLDAMKKNAPD YPVKRIRLRDGGSRIFVELDVEAPAELHVDDAHDVAESIEGIVKHELPEADVIVHIEPARENLSNMEPDMIIHRLALRHH VRIHGFYAGHGKQAPCYFMDVEIPADWPLERGYHVVEAFRDSILHELKPEKVICRIEPDCRDMETGAIAEQVSPEEVRLK VNLILQQHRNIRKILKLDLTREANFPTLTCVCSVDASLTIRECHQIASQLENQIENALHHLGRVTVILKPSKQNRN >Mature_476_residues MEQAAHQEKSHAALSSVLWSAFLTVIKLWAGIVTGSLGIISEALHSGLDLMAAAMTFYAVKVASRPADESHPYGHEKVEN LSALAETALLLVTCAWIVWEAVDRLFYNEAEITLTWWAFAVVAVSLLVDVNRSAMLRRIAKKHKSQALEADALHFTTDIW SSAVVLLGLFCIWLAHLVPAESAWHGLLERADAIAALFVAALVCSVAFGLAKRSIHALMDGGSSSLTRQVLDAMKKNAPD YPVKRIRLRDGGSRIFVELDVEAPAELHVDDAHDVAESIEGIVKHELPEADVIVHIEPARENLSNMEPDMIIHRLALRHH VRIHGFYAGHGKQAPCYFMDVEIPADWPLERGYHVVEAFRDSILHELKPEKVICRIEPDCRDMETGAIAEQVSPEEVRLK VNLILQQHRNIRKILKLDLTREANFPTLTCVCSVDASLTIRECHQIASQLENQIENALHHLGRVTVILKPSKQNRN
Specific function: Cation-efflux transporter that may have a role in detoxification [H]
COG id: COG0053
COG function: function code P; Predicted Co/Zn/Cd cation transporters
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. FieF subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790349, Length=299, Percent_Identity=26.0869565217391, Blast_Score=108, Evalue=1e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002524 [H]
Pfam domain/function: PF01545 Cation_efflux [H]
EC number: NA
Molecular weight: Translated: 53014; Mature: 53014
Theoretical pI: Translated: 6.41; Mature: 6.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEQAAHQEKSHAALSSVLWSAFLTVIKLWAGIVTGSLGIISEALHSGLDLMAAAMTFYAV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHH KVASRPADESHPYGHEKVENLSALAETALLLVTCAWIVWEAVDRLFYNEAEITLTWWAFA HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHH VVAVSLLVDVNRSAMLRRIAKKHKSQALEADALHFTTDIWSSAVVLLGLFCIWLAHLVPA HHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC ESAWHGLLERADAIAALFVAALVCSVAFGLAKRSIHALMDGGSSSLTRQVLDAMKKNAPD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC YPVKRIRLRDGGSRIFVELDVEAPAELHVDDAHDVAESIEGIVKHELPEADVIVHIEPAR CCCEEEEEECCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECHH ENLSNMEPDMIIHRLALRHHVRIHGFYAGHGKQAPCYFMDVEIPADWPLERGYHVVEAFR HHHCCCCHHHHHHHHHHHHHEEEEEEEECCCCCCCEEEEEEECCCCCCHHCCHHHHHHHH DSILHELKPEKVICRIEPDCRDMETGAIAEQVSPEEVRLKVNLILQQHRNIRKILKLDLT HHHHHHCCCCCEEEEECCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC REANFPTLTCVCSVDASLTIRECHQIASQLENQIENALHHLGRVTVILKPSKQNRN CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCC >Mature Secondary Structure MEQAAHQEKSHAALSSVLWSAFLTVIKLWAGIVTGSLGIISEALHSGLDLMAAAMTFYAV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHH KVASRPADESHPYGHEKVENLSALAETALLLVTCAWIVWEAVDRLFYNEAEITLTWWAFA HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHH VVAVSLLVDVNRSAMLRRIAKKHKSQALEADALHFTTDIWSSAVVLLGLFCIWLAHLVPA HHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC ESAWHGLLERADAIAALFVAALVCSVAFGLAKRSIHALMDGGSSSLTRQVLDAMKKNAPD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC YPVKRIRLRDGGSRIFVELDVEAPAELHVDDAHDVAESIEGIVKHELPEADVIVHIEPAR CCCEEEEEECCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECHH ENLSNMEPDMIIHRLALRHHVRIHGFYAGHGKQAPCYFMDVEIPADWPLERGYHVVEAFR HHHCCCCHHHHHHHHHHHHHEEEEEEEECCCCCCCEEEEEEECCCCCCHHCCHHHHHHHH DSILHELKPEKVICRIEPDCRDMETGAIAEQVSPEEVRLKVNLILQQHRNIRKILKLDLT HHHHHHCCCCCEEEEECCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC REANFPTLTCVCSVDASLTIRECHQIASQLENQIENALHHLGRVTVILKPSKQNRN CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA