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The map label for this gene is ygcF [C]

Identifier: 187735213

GI number: 187735213

Start: 833429

End: 834112

Strand: Direct

Name: ygcF [C]

Synonym: Amuc_0707

Alternate gene names: 187735213

Gene position: 833429-834112 (Clockwise)

Preceding gene: 187735212

Following gene: 187735216

Centisome position: 31.28

GC content: 57.6

Gene sequence:

>684_bases
ATGCTCACACTGGCCCAGATTCACGGACAACCGGAAATTTTCCATTCCATTCAGGGGGAAGGAGTCTCCCAGGGAACACC
CTGCGTTTTCCTGCGTCTGGCAGGCTGCAATCTGGCCTGTTCCTGGTGTGATACGGCGTATTCCTGGAACGGAACGGTTC
CCGGAGTGCGCCTCGCGCCTGAAAAGGCGGCTGAACTGGTGCTCCATTATCCATGCCGCCGCCTGGTCCTGACCGGAGGG
GAGCCGCTCATTCAGCAAAAGGCGCTTCCCGCCCTGCTGCGCCTGTTGCCGGATCATGCCGTGGAAATGGAAACCAACGG
CACCATCATGCCGGATACGGAACTGCTGAAACGCGTCACGCAATTCAACGTATCTCCCAAACTCCCCCATTCAGGCAATA
ACGACGTTAAGACTTGGAAACCGGATATCCTGCGCTGTCTGGCGGGTACGGAGAAAGCCTGGTTCAAATTCGTCGTGGCG
TGCGAGGACGATGTCAGGGCCGTTCTGCAGCGGGCTTCCGAAGCGGACATTCCCCCGGAACGAATTCTGATCATGCCCCT
GGCCTCCACACGGGATGAGTTGAACGCCATGCGTCCGCAGGCGGTGGAATGGTGTCTCCGCTACGGTCTTCGTTTTTCAG
ACCGTCTGCATATCGCCATCTGGAACAGCAAAAAAGGCGTTTAA

Upstream 100 bases:

>100_bases
GCCGGAAAATGAAATGCACGGAGAACAAGGAAGCACCCGCCTGCCCTCAGGGAGTCGTTGACGGACGGCAGGGATATGAT
AGTCTCAGGCCAGCCTGATC

Downstream 100 bases:

>100_bases
GCACGCTCCTGACTCATCAGGAAAGACAAATGCTTCCCGCTTTTCCGGCCGGAATTCCGCAAGCCTCCAAGGCTCTGCGC
CATCGGGAAACCTACGCTTT

Product: Radical SAM domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MLTLAQIHGQPEIFHSIQGEGVSQGTPCVFLRLAGCNLACSWCDTAYSWNGTVPGVRLAPEKAAELVLHYPCRRLVLTGG
EPLIQQKALPALLRLLPDHAVEMETNGTIMPDTELLKRVTQFNVSPKLPHSGNNDVKTWKPDILRCLAGTEKAWFKFVVA
CEDDVRAVLQRASEADIPPERILIMPLASTRDELNAMRPQAVEWCLRYGLRFSDRLHIAIWNSKKGV

Sequences:

>Translated_227_residues
MLTLAQIHGQPEIFHSIQGEGVSQGTPCVFLRLAGCNLACSWCDTAYSWNGTVPGVRLAPEKAAELVLHYPCRRLVLTGG
EPLIQQKALPALLRLLPDHAVEMETNGTIMPDTELLKRVTQFNVSPKLPHSGNNDVKTWKPDILRCLAGTEKAWFKFVVA
CEDDVRAVLQRASEADIPPERILIMPLASTRDELNAMRPQAVEWCLRYGLRFSDRLHIAIWNSKKGV
>Mature_227_residues
MLTLAQIHGQPEIFHSIQGEGVSQGTPCVFLRLAGCNLACSWCDTAYSWNGTVPGVRLAPEKAAELVLHYPCRRLVLTGG
EPLIQQKALPALLRLLPDHAVEMETNGTIMPDTELLKRVTQFNVSPKLPHSGNNDVKTWKPDILRCLAGTEKAWFKFVVA
CEDDVRAVLQRASEADIPPERILIMPLASTRDELNAMRPQAVEWCLRYGLRFSDRLHIAIWNSKKGV

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygcF and H.influenzae HI_1189 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 25319; Mature: 25319

Theoretical pI: Translated: 7.74; Mature: 7.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTLAQIHGQPEIFHSIQGEGVSQGTPCVFLRLAGCNLACSWCDTAYSWNGTVPGVRLAP
CCEEEHHCCCHHHHHHHCCCCCCCCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCEECH
EKAAELVLHYPCRRLVLTGGEPLIQQKALPALLRLLPDHAVEMETNGTIMPDTELLKRVT
HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHH
QFNVSPKLPHSGNNDVKTWKPDILRCLAGTEKAWFKFVVACEDDVRAVLQRASEADIPPE
HCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHEEEEEECCHHHHHHHHHHHCCCCCCH
RILIMPLASTRDELNAMRPQAVEWCLRYGLRFSDRLHIAIWNSKKGV
HEEEEECCCCHHHHHCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCC
>Mature Secondary Structure
MLTLAQIHGQPEIFHSIQGEGVSQGTPCVFLRLAGCNLACSWCDTAYSWNGTVPGVRLAP
CCEEEHHCCCHHHHHHHCCCCCCCCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCEECH
EKAAELVLHYPCRRLVLTGGEPLIQQKALPALLRLLPDHAVEMETNGTIMPDTELLKRVT
HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHH
QFNVSPKLPHSGNNDVKTWKPDILRCLAGTEKAWFKFVVACEDDVRAVLQRASEADIPPE
HCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHEEEEEECCHHHHHHHHHHHCCCCCCH
RILIMPLASTRDELNAMRPQAVEWCLRYGLRFSDRLHIAIWNSKKGV
HEEEEECCCCHHHHHCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12089438 [H]