Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
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Accession | NC_010622 |
Length | 3,479,187 |
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The map label for this gene is metG [H]
Identifier: 186476942
GI number: 186476942
Start: 2459745
End: 2461925
Strand: Direct
Name: metG [H]
Synonym: Bphy_2191
Alternate gene names: 186476942
Gene position: 2459745-2461925 (Clockwise)
Preceding gene: 186476941
Following gene: 186476943
Centisome position: 70.7
GC content: 63.14
Gene sequence:
>2181_bases ATGTCAGCAACCGACGCCACCGCGGTTCAATCCGCGGACCTCACCGCCACCGGCGCGCCGAAGGCTCGCCGCCAGATCCT CGTCACGTCTGCCCTGCCGTACGCGAACGGGCAAATTCATATCGGCCACCTGGTCGAATATATCCAGACGGACATCTGGG TCCGCGCGCTGCGAATGCATGGGCACGAGGTCTACTACGTCGGCGCGGACGACACGCACGGCACGCCCATCATGCTGAAG GCAGAGCAGGAAGGCATCACGCCCAAGCAGCTGATCGACCGCGTGTGGCAGGAGCACAAACGCGATTTCGACAACTTTGG CATTTCGTTCGACAACTACTACTCGACCGATTCCGAAGAGAACCGCGTGCTGTCCGAGTCGATCTACACGGCGCTGCAAG CGGCCGGTCTGATCGAGGCGCGCGACATCGAGCAGGCGTATGACCCCGTCAAGGAAATGTTCCTGCCGGACCGCTTCATC AAGGGCGAGTGTCCCAAGTGCCACGCGAAGGATCAATACGGCGACAACTGCGAAGTATGCGGCTCGACCTACCAGCCCAC GGAGTTGATCAACCCGTACTCCGTCGTGTCGGGCGCGACGCCTGTCAAGAAGACGTCGACGCACTACTTCTTCAGGCTGT CCGACCCGCGCTGCGAGAATTTTCTGCGCGGCTGGGTAGGCGGTCTCGCGCAGCAGGAAGCGACCAACAAGATGCGCGAG TGGCTCGGCGACGCGGGCGAAGCAAAGCTCGCGGACTGGGACATCTCGCGCGACGCGCCCTATTTCGGCTTCGAGATTCC GGGCGCGCCCGGCAAATACTTTTACGTGTGGCTGGACGCGCCCGTCGGCTATTACGCGAGCTTACGCAACCTGGCCGAAA AGCGCGGCCTCGATTTCGACGCGTGGACGAAAAAAGGCGCGACGACCGAGCAATATCATTTCATCGGCAAGGACATCCTG TACTTCCACACGCTGTTCTGGCCGGCGATGCTCGAGTTCTCGGGTCACCGCACGCCAACCAACGTGTTCGCGCACGGCTT CCTGACCGTCGATGGCGCGAAGATGTCGAAGTCGCGCGGCACGTTCATCACGGCCAATAGCGTGATCGAAACGGGCATGA ATCCCGAGTGGCTGCGCTACTACTTCGCGGCCAAACTGAACAGCACGATGGAAGACATCGATCTGAATCTCGAGGACTTC CAGGCGCGCGTGAACAGCGATCTCGTCGGCAAGTATGTGAACATCGCCAGCCGGGCGGCGGGCTTTCTGCTCAAGCGCTT CGACGGCCGTGTGCAGGACAGCGCGATGCAGCACCCGCTGCTCGCGTCGCTGCGCGGTGCCATTGCGCAAATCGCCGCGC ACTACGAGGCACGCGACTACGGCCGCGCGCTGCGCCTGACGATGGAACTCGCGGACTCCGTCAATGCGTATGTCGACACG GCCAAGCCGTGGGATCAGGCGAAGGATCCCGCCAACGCGGTCGCGCTGCACGAAACGTGCAGCGTGTCGCTGGAGGCGTT CCGCCTGCTGTCGCTCGCGCTCAAGCCCGTGTTGCCGAAGGTCGCGGAAGCGGCCGAGGCGTTCCTCGGCATCGAGCCGC TCAAGTGGACGGACGCCGACGTGCCGCTGCGTTCGACGCACGCGATCAACGCGTACAAACATCTGATGACGCGCGTCGAT CCGAAGCAGATCGAGGCGCTGCTCGCGGCGAACCGCGGCTCGCTGCAACCGGCTGCATCGGCTGAAGCGCAGTCCGCGGC TGCCAAGGCCAAAGCCAAGGCGCACGCGAAAGCGACGGCGGCCGCCCACGGCGACGCCTCGGCAAAGCCCGACGACAGCG GCATCATCTCGATCGACGACTTCGCGAAGATCGATCTGCGCATTGCGAAGATCGTCGATTGCAAGGCGGTCGAAGGCTCG GACAAGCTGCTGCAACTGACGCTCGACGTCGGCGAAGAAAAGACGCGCAACGTGTTTTCCGGAATCAAGTCGGCGTATCA GCCGGAGCAACTGGTCGGCAAGTTGACTGTGATGGTCGCGAACCTCGCGCCGCGCAAGATGAAGTTCGGCTTGTCGGAAG GCATGGTGCTCGCGGCATCGGCAGCAGACGAGAAGGCCGAACCGGGCATCTACGTGCTCGAGCCGGACAGCGGCGCGAAG CCGGGCATGCGCGTCAAATAA
Upstream 100 bases:
>100_bases AGCGGACATTCCCGCCCGTGCGGTCCTGGGCACAGCGCCGTCCGCCGACGTCGAACGTCGTGACGGCCGCCCGTACCTTG CGCCAGTCCATAGAACCCAC
Downstream 100 bases:
>100_bases CGCACTCATCGATCTACCGGCGCACAGCCGTCAACCAGGAAAGCACGTCTTCGGACGTGCTTTTTTTTCGTCCGGAACCG AGTTCTGGCGACCGGCTCCT
Product: methionyl-tRNA synthetase
Products: NA
Alternate protein names: Methionine--tRNA ligase; MetRS [H]
Number of amino acids: Translated: 726; Mature: 725
Protein sequence:
>726_residues MSATDATAVQSADLTATGAPKARRQILVTSALPYANGQIHIGHLVEYIQTDIWVRALRMHGHEVYYVGADDTHGTPIMLK AEQEGITPKQLIDRVWQEHKRDFDNFGISFDNYYSTDSEENRVLSESIYTALQAAGLIEARDIEQAYDPVKEMFLPDRFI KGECPKCHAKDQYGDNCEVCGSTYQPTELINPYSVVSGATPVKKTSTHYFFRLSDPRCENFLRGWVGGLAQQEATNKMRE WLGDAGEAKLADWDISRDAPYFGFEIPGAPGKYFYVWLDAPVGYYASLRNLAEKRGLDFDAWTKKGATTEQYHFIGKDIL YFHTLFWPAMLEFSGHRTPTNVFAHGFLTVDGAKMSKSRGTFITANSVIETGMNPEWLRYYFAAKLNSTMEDIDLNLEDF QARVNSDLVGKYVNIASRAAGFLLKRFDGRVQDSAMQHPLLASLRGAIAQIAAHYEARDYGRALRLTMELADSVNAYVDT AKPWDQAKDPANAVALHETCSVSLEAFRLLSLALKPVLPKVAEAAEAFLGIEPLKWTDADVPLRSTHAINAYKHLMTRVD PKQIEALLAANRGSLQPAASAEAQSAAAKAKAKAHAKATAAAHGDASAKPDDSGIISIDDFAKIDLRIAKIVDCKAVEGS DKLLQLTLDVGEEKTRNVFSGIKSAYQPEQLVGKLTVMVANLAPRKMKFGLSEGMVLAASAADEKAEPGIYVLEPDSGAK PGMRVK
Sequences:
>Translated_726_residues MSATDATAVQSADLTATGAPKARRQILVTSALPYANGQIHIGHLVEYIQTDIWVRALRMHGHEVYYVGADDTHGTPIMLK AEQEGITPKQLIDRVWQEHKRDFDNFGISFDNYYSTDSEENRVLSESIYTALQAAGLIEARDIEQAYDPVKEMFLPDRFI KGECPKCHAKDQYGDNCEVCGSTYQPTELINPYSVVSGATPVKKTSTHYFFRLSDPRCENFLRGWVGGLAQQEATNKMRE WLGDAGEAKLADWDISRDAPYFGFEIPGAPGKYFYVWLDAPVGYYASLRNLAEKRGLDFDAWTKKGATTEQYHFIGKDIL YFHTLFWPAMLEFSGHRTPTNVFAHGFLTVDGAKMSKSRGTFITANSVIETGMNPEWLRYYFAAKLNSTMEDIDLNLEDF QARVNSDLVGKYVNIASRAAGFLLKRFDGRVQDSAMQHPLLASLRGAIAQIAAHYEARDYGRALRLTMELADSVNAYVDT AKPWDQAKDPANAVALHETCSVSLEAFRLLSLALKPVLPKVAEAAEAFLGIEPLKWTDADVPLRSTHAINAYKHLMTRVD PKQIEALLAANRGSLQPAASAEAQSAAAKAKAKAHAKATAAAHGDASAKPDDSGIISIDDFAKIDLRIAKIVDCKAVEGS DKLLQLTLDVGEEKTRNVFSGIKSAYQPEQLVGKLTVMVANLAPRKMKFGLSEGMVLAASAADEKAEPGIYVLEPDSGAK PGMRVK >Mature_725_residues SATDATAVQSADLTATGAPKARRQILVTSALPYANGQIHIGHLVEYIQTDIWVRALRMHGHEVYYVGADDTHGTPIMLKA EQEGITPKQLIDRVWQEHKRDFDNFGISFDNYYSTDSEENRVLSESIYTALQAAGLIEARDIEQAYDPVKEMFLPDRFIK GECPKCHAKDQYGDNCEVCGSTYQPTELINPYSVVSGATPVKKTSTHYFFRLSDPRCENFLRGWVGGLAQQEATNKMREW LGDAGEAKLADWDISRDAPYFGFEIPGAPGKYFYVWLDAPVGYYASLRNLAEKRGLDFDAWTKKGATTEQYHFIGKDILY FHTLFWPAMLEFSGHRTPTNVFAHGFLTVDGAKMSKSRGTFITANSVIETGMNPEWLRYYFAAKLNSTMEDIDLNLEDFQ ARVNSDLVGKYVNIASRAAGFLLKRFDGRVQDSAMQHPLLASLRGAIAQIAAHYEARDYGRALRLTMELADSVNAYVDTA KPWDQAKDPANAVALHETCSVSLEAFRLLSLALKPVLPKVAEAAEAFLGIEPLKWTDADVPLRSTHAINAYKHLMTRVDP KQIEALLAANRGSLQPAASAEAQSAAAKAKAKAHAKATAAAHGDASAKPDDSGIISIDDFAKIDLRIAKIVDCKAVEGSD KLLQLTLDVGEEKTRNVFSGIKSAYQPEQLVGKLTVMVANLAPRKMKFGLSEGMVLAASAADEKAEPGIYVLEPDSGAKP GMRVK
Specific function: Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation [H]
COG id: COG0143
COG function: function code J; Methionyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain [H]
Homologues:
Organism=Homo sapiens, GI14043022, Length=562, Percent_Identity=27.5800711743772, Blast_Score=213, Evalue=4e-55, Organism=Homo sapiens, GI24308436, Length=535, Percent_Identity=26.5420560747664, Blast_Score=155, Evalue=1e-37, Organism=Escherichia coli, GI1788432, Length=707, Percent_Identity=54.8797736916549, Blast_Score=758, Evalue=0.0, Organism=Escherichia coli, GI1789455, Length=110, Percent_Identity=35.4545454545455, Blast_Score=64, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17540794, Length=617, Percent_Identity=26.904376012966, Blast_Score=229, Evalue=5e-60, Organism=Caenorhabditis elegans, GI212645096, Length=546, Percent_Identity=23.4432234432234, Blast_Score=128, Evalue=9e-30, Organism=Caenorhabditis elegans, GI71992781, Length=281, Percent_Identity=25.2669039145907, Blast_Score=97, Evalue=2e-20, Organism=Saccharomyces cerevisiae, GI6321704, Length=564, Percent_Identity=28.3687943262411, Blast_Score=238, Evalue=2e-63, Organism=Saccharomyces cerevisiae, GI6321610, Length=549, Percent_Identity=24.0437158469945, Blast_Score=117, Evalue=9e-27, Organism=Drosophila melanogaster, GI24655311, Length=628, Percent_Identity=28.6624203821656, Blast_Score=221, Evalue=1e-57, Organism=Drosophila melanogaster, GI21358483, Length=524, Percent_Identity=26.5267175572519, Blast_Score=136, Evalue=4e-32,
Paralogues:
None
Copy number: 871 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001412 - InterPro: IPR015413 - InterPro: IPR004495 - InterPro: IPR014758 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR014729 - InterPro: IPR002547 - InterPro: IPR009080 - InterPro: IPR013155 [H]
Pfam domain/function: PF08264 Anticodon_1; PF09334 tRNA-synt_1g; PF01588 tRNA_bind [H]
EC number: =6.1.1.10 [H]
Molecular weight: Translated: 79970; Mature: 79839
Theoretical pI: Translated: 6.31; Mature: 6.31
Prosite motif: PS50886 TRBD ; PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSATDATAVQSADLTATGAPKARRQILVTSALPYANGQIHIGHLVEYIQTDIWVRALRMH CCCCCCCHHCCCCCCCCCCCHHHHEEEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHC GHEVYYVGADDTHGTPIMLKAEQEGITPKQLIDRVWQEHKRDFDNFGISFDNYYSTDSEE CCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCHH NRVLSESIYTALQAAGLIEARDIEQAYDPVKEMFLPDRFIKGECPKCHAKDQYGDNCEVC HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCHHCC GSTYQPTELINPYSVVSGATPVKKTSTHYFFRLSDPRCENFLRGWVGGLAQQEATNKMRE CCCCCCHHHCCCHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH WLGDAGEAKLADWDISRDAPYFGFEIPGAPGKYFYVWLDAPVGYYASLRNLAEKRGLDFD HHCCCCCCEEECCCCCCCCCCCCEECCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCH AWTKKGATTEQYHFIGKDILYFHTLFWPAMLEFSGHRTPTNVFAHGFLTVDGAKMSKSRG HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEEEEECCCHHCCCCC TFITANSVIETGMNPEWLRYYFAAKLNSTMEDIDLNLEDFQARVNSDLVGKYVNIASRAA CEEEECHHHHCCCCHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHH GFLLKRFDGRVQDSAMQHPLLASLRGAIAQIAAHYEARDYGRALRLTMELADSVNAYVDT HHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC AKPWDQAKDPANAVALHETCSVSLEAFRLLSLALKPVLPKVAEAAEAFLGIEPLKWTDAD CCCCHHCCCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC VPLRSTHAINAYKHLMTRVDPKQIEALLAANRGSLQPAASAEAQSAAAKAKAKAHAKATA CCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH AAHGDASAKPDDSGIISIDDFAKIDLRIAKIVDCKAVEGSDKLLQLTLDVGEEKTRNVFS HCCCCCCCCCCCCCEEEECCCCHHHEEEEEEEECEECCCCCCEEEEEECCCCHHHHHHHH GIKSAYQPEQLVGKLTVMVANLAPRKMKFGLSEGMVLAASAADEKAEPGIYVLEPDSGAK HHHHCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCEEEEEECCCCCCCCCEEEECCCCCCC PGMRVK CCCCCC >Mature Secondary Structure SATDATAVQSADLTATGAPKARRQILVTSALPYANGQIHIGHLVEYIQTDIWVRALRMH CCCCCCHHCCCCCCCCCCCHHHHEEEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHC GHEVYYVGADDTHGTPIMLKAEQEGITPKQLIDRVWQEHKRDFDNFGISFDNYYSTDSEE CCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCHH NRVLSESIYTALQAAGLIEARDIEQAYDPVKEMFLPDRFIKGECPKCHAKDQYGDNCEVC HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCHHCC GSTYQPTELINPYSVVSGATPVKKTSTHYFFRLSDPRCENFLRGWVGGLAQQEATNKMRE CCCCCCHHHCCCHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH WLGDAGEAKLADWDISRDAPYFGFEIPGAPGKYFYVWLDAPVGYYASLRNLAEKRGLDFD HHCCCCCCEEECCCCCCCCCCCCEECCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCH AWTKKGATTEQYHFIGKDILYFHTLFWPAMLEFSGHRTPTNVFAHGFLTVDGAKMSKSRG HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEEEEECCCHHCCCCC TFITANSVIETGMNPEWLRYYFAAKLNSTMEDIDLNLEDFQARVNSDLVGKYVNIASRAA CEEEECHHHHCCCCHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHH GFLLKRFDGRVQDSAMQHPLLASLRGAIAQIAAHYEARDYGRALRLTMELADSVNAYVDT HHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC AKPWDQAKDPANAVALHETCSVSLEAFRLLSLALKPVLPKVAEAAEAFLGIEPLKWTDAD CCCCHHCCCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC VPLRSTHAINAYKHLMTRVDPKQIEALLAANRGSLQPAASAEAQSAAAKAKAKAHAKATA CCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH AAHGDASAKPDDSGIISIDDFAKIDLRIAKIVDCKAVEGSDKLLQLTLDVGEEKTRNVFS HCCCCCCCCCCCCCEEEECCCCHHHEEEEEEEECEECCCCCCEEEEEECCCCHHHHHHHH GIKSAYQPEQLVGKLTVMVANLAPRKMKFGLSEGMVLAASAADEKAEPGIYVLEPDSGAK HHHHCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCEEEEEECCCCCCCCCEEEECCCCCCC PGMRVK CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA