Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
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Accession | NC_010622 |
Length | 3,479,187 |
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The map label for this gene is 186476943
Identifier: 186476943
GI number: 186476943
Start: 2462251
End: 2464164
Strand: Direct
Name: 186476943
Synonym: Bphy_2192
Alternate gene names: NA
Gene position: 2462251-2464164 (Clockwise)
Preceding gene: 186476942
Following gene: 186476946
Centisome position: 70.77
GC content: 62.7
Gene sequence:
>1914_bases ATGAGCCCTGAATTTTCTCTCGAGCAGTTCGAATCCCTCGTTGCGTCGCGCGATTACGAAACAGCGCATGAAGCGCTGGT CGGACTAATCAATACGTTCATCTCGAACCGCAGCCGGTTGCCGGGCGTCGATCTGGCCTTCGCCGATCCCACCCGGCCGG CAAGCAAAGAAGGCACCTCGACGCTGCAGCGCATCGCCGACGCCATCACCGCGCTCCTCGCCGCCCCCCAATTCAGATTG AACGACCTGCAATTCAATCAGCTCTTCTCGAGCCGCCACTGGCTCAATATGCTGTTCGTCGCCTCGTCGTATGGCAGCGT GGATCACATCCTGCGCGCGCTGCTCGCGCACCCGCCTCGCCCAGACGATCCCGAAGCCGCGAAGGCGTTGACCCGAAAAC AGATCGTGCTGTACACCATCGAATCCGAATTCGACATCGACCTCGCCGACCTCGCGAAAAGCGACCCGGTACTGGCGACG AGCCTCGGCATGTCGGTCGTCAGTTCGGCTGTGGTGATCTCACCGGCGGCGCATGAGAAGCGGGAACGTCTGATCGAGTG GCTGCCGCGCGCGCTCGAATCCATTGCCGATCTCGACGACTTGCCGGGCCCGGCCGTCTGCGGCGCCTACATGCATTGCA GCTACTCGGACCTGCCGAACCGGCACGCGATGAAGCGCGGCATCAGCCAGCTCGTGCGCAGGAAGCTGGGCGAACTGGGC CTGCTCGCGCACGAAGCGGACGTCGGCTGCGTTCCCCTGCTGGACAACACCAGGGAGTGTGAAAGCGGCACTACCCGAAA GCCGCTGATGATCGTCGTGCTCGAATGGTTCAATGGCGGCCATTCGATCTACCGTACGCACTCGCGCACCATGCTCGCGG CACGCGAGCGCTTCGAAGTCGTCGCGTTCGGCGAGGCGCAACATGTCGATGCCGCGGGGCGCGAGGTGTTCGACCGCTTC ATTCCCTTTGAGCATCCCGAGTATGTCGGCGAGATCGTTCGTCAGATCCAGACCTTTGCGCGCGAGAACCCGCCTGCCGT GCTCTACATGCCGAGCGTCGGCATGTTCCCGCATACCATCTTCATGACGAACGTGCGCGTCGCGCCGCTTCAGATCGCCG CGCTCGGCCATCCCGCGACGATGCACGCCCAGTGCATCGACTATGTGAGCGTCGAGGAAGATTTCGTCGGCGACCCGGCG TGCTTCAGCGAAAAGCTGATGCGTCTGCCGAAGGACGGCCAGCCGTACGTGCCATCGAAGCTGCTGACCGACATCACACC GAGCGTTCCGGCACGCGGTGCGTATCTCAACATTGCCGTGACCGCGAGCGCAATGAAGCTCAATCCACGCTTTCTCGACG CGTGCCGGCAGATCATCGAGACGGCCGGGATTCGCGTGTGCTTCCACTTCATGACATCGTGGTCCGAAGGCCTCGACATC GCGTATGTGCGCAAGCTGGTGGAGTCCGCGATCCCGCGCAGCAATGTGCTCGTGTACGGCGGGTTGAGCTACAGCACGTA TCTCAAGGTCATCAACGCGATGGACATGTTCGTGAGTCCGTTTCCGTTCGGCAATACGAACGGCATCGTCGACGCATTCA CGCTTGGCTTGCCGGGCGTGAACCTGTGCGGCCCCGAGGTGTTCGAGCACATCGACAGCGGTCTGTTCGAACGCGCCGGC ATGCCCGCATGGCTGACGGCGCATTCGATCGACGAGTACGTGCGCGCAGCCGTGCGCCTCGCCACGCAGCATGACGAGCG CGAAGCCTTGCGCCGTCAGATGATCGAGAAAAAGGCCGTCGAGCGGATTTTCGAAGGGCGGCCGGAAGCGTTCGGCCGCA ATGTGCTCGCGCTGCTAAACGCACAGGCACAAAACCACGCAGCGCCGCACCGCGGCGCACGAATAAAAGGCTGA
Upstream 100 bases:
>100_bases CGGCGCCCCATACGCCGCCGTGTCTCGCGCGGCGACTCGCCCGCTCCCTTGTTGACACGACGCGCTCGAAGATTCGGGCC GCCTTCACTCGATTACCGAC
Downstream 100 bases:
>100_bases TCGCGGGCAAGATCGAAGTCACGCGTATCTGTGGTCCGCAGATCAACCGGCGAGGCGCGCGACGCACGCCGGTTTTTTTC GTCGTCCTGCAGGTCACCAC
Product: putative adhesin processing HmwC-like protein
Products: NA
Alternate protein names: Adhesin Processing HmwC-Like Protein; O-Linked N-Acetylglucosamine Transferase; Adhesin Processing Protein; TPR Repeat-Containing Protein; Glycosyltransferase
Number of amino acids: Translated: 637; Mature: 636
Protein sequence:
>637_residues MSPEFSLEQFESLVASRDYETAHEALVGLINTFISNRSRLPGVDLAFADPTRPASKEGTSTLQRIADAITALLAAPQFRL NDLQFNQLFSSRHWLNMLFVASSYGSVDHILRALLAHPPRPDDPEAAKALTRKQIVLYTIESEFDIDLADLAKSDPVLAT SLGMSVVSSAVVISPAAHEKRERLIEWLPRALESIADLDDLPGPAVCGAYMHCSYSDLPNRHAMKRGISQLVRRKLGELG LLAHEADVGCVPLLDNTRECESGTTRKPLMIVVLEWFNGGHSIYRTHSRTMLAARERFEVVAFGEAQHVDAAGREVFDRF IPFEHPEYVGEIVRQIQTFARENPPAVLYMPSVGMFPHTIFMTNVRVAPLQIAALGHPATMHAQCIDYVSVEEDFVGDPA CFSEKLMRLPKDGQPYVPSKLLTDITPSVPARGAYLNIAVTASAMKLNPRFLDACRQIIETAGIRVCFHFMTSWSEGLDI AYVRKLVESAIPRSNVLVYGGLSYSTYLKVINAMDMFVSPFPFGNTNGIVDAFTLGLPGVNLCGPEVFEHIDSGLFERAG MPAWLTAHSIDEYVRAAVRLATQHDEREALRRQMIEKKAVERIFEGRPEAFGRNVLALLNAQAQNHAAPHRGARIKG
Sequences:
>Translated_637_residues MSPEFSLEQFESLVASRDYETAHEALVGLINTFISNRSRLPGVDLAFADPTRPASKEGTSTLQRIADAITALLAAPQFRL NDLQFNQLFSSRHWLNMLFVASSYGSVDHILRALLAHPPRPDDPEAAKALTRKQIVLYTIESEFDIDLADLAKSDPVLAT SLGMSVVSSAVVISPAAHEKRERLIEWLPRALESIADLDDLPGPAVCGAYMHCSYSDLPNRHAMKRGISQLVRRKLGELG LLAHEADVGCVPLLDNTRECESGTTRKPLMIVVLEWFNGGHSIYRTHSRTMLAARERFEVVAFGEAQHVDAAGREVFDRF IPFEHPEYVGEIVRQIQTFARENPPAVLYMPSVGMFPHTIFMTNVRVAPLQIAALGHPATMHAQCIDYVSVEEDFVGDPA CFSEKLMRLPKDGQPYVPSKLLTDITPSVPARGAYLNIAVTASAMKLNPRFLDACRQIIETAGIRVCFHFMTSWSEGLDI AYVRKLVESAIPRSNVLVYGGLSYSTYLKVINAMDMFVSPFPFGNTNGIVDAFTLGLPGVNLCGPEVFEHIDSGLFERAG MPAWLTAHSIDEYVRAAVRLATQHDEREALRRQMIEKKAVERIFEGRPEAFGRNVLALLNAQAQNHAAPHRGARIKG >Mature_636_residues SPEFSLEQFESLVASRDYETAHEALVGLINTFISNRSRLPGVDLAFADPTRPASKEGTSTLQRIADAITALLAAPQFRLN DLQFNQLFSSRHWLNMLFVASSYGSVDHILRALLAHPPRPDDPEAAKALTRKQIVLYTIESEFDIDLADLAKSDPVLATS LGMSVVSSAVVISPAAHEKRERLIEWLPRALESIADLDDLPGPAVCGAYMHCSYSDLPNRHAMKRGISQLVRRKLGELGL LAHEADVGCVPLLDNTRECESGTTRKPLMIVVLEWFNGGHSIYRTHSRTMLAARERFEVVAFGEAQHVDAAGREVFDRFI PFEHPEYVGEIVRQIQTFARENPPAVLYMPSVGMFPHTIFMTNVRVAPLQIAALGHPATMHAQCIDYVSVEEDFVGDPAC FSEKLMRLPKDGQPYVPSKLLTDITPSVPARGAYLNIAVTASAMKLNPRFLDACRQIIETAGIRVCFHFMTSWSEGLDIA YVRKLVESAIPRSNVLVYGGLSYSTYLKVINAMDMFVSPFPFGNTNGIVDAFTLGLPGVNLCGPEVFEHIDSGLFERAGM PAWLTAHSIDEYVRAAVRLATQHDEREALRRQMIEKKAVERIFEGRPEAFGRNVLALLNAQAQNHAAPHRGARIKG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 70559; Mature: 70428
Theoretical pI: Translated: 6.47; Mature: 6.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPEFSLEQFESLVASRDYETAHEALVGLINTFISNRSRLPGVDLAFADPTRPASKEGTS CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCHHH TLQRIADAITALLAAPQFRLNDLQFNQLFSSRHWLNMLFVASSYGSVDHILRALLAHPPR HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC PDDPEAAKALTRKQIVLYTIESEFDIDLADLAKSDPVLATSLGMSVVSSAVVISPAAHEK CCCHHHHHHHHHCEEEEEEECCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHEECCCHHHH RERLIEWLPRALESIADLDDLPGPAVCGAYMHCSYSDLPNRHAMKRGISQLVRRKLGELG HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHC LLAHEADVGCVPLLDNTRECESGTTRKPLMIVVLEWFNGGHSIYRTHSRTMLAARERFEV CEEECCCCCEEECCCCCHHHCCCCCCCCEEEEEEECCCCCCCEEHHHHHHHHHHHHCEEE VAFGEAQHVDAAGREVFDRFIPFEHPEYVGEIVRQIQTFARENPPAVLYMPSVGMFPHTI EEECCCHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEE FMTNVRVAPLQIAALGHPATMHAQCIDYVSVEEDFVGDPACFSEKLMRLPKDGQPYVPSK EEECCEECCEEEEECCCCHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHCCCCCCCCCCHH LLTDITPSVPARGAYLNIAVTASAMKLNPRFLDACRQIIETAGIRVCFHFMTSWSEGLDI HHHHCCCCCCCCCCEEEEEEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH AYVRKLVESAIPRSNVLVYGGLSYSTYLKVINAMDMFVSPFPFGNTNGIVDAFTLGLPGV HHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCC NLCGPEVFEHIDSGLFERAGMPAWLTAHSIDEYVRAAVRLATQHDEREALRRQMIEKKAV CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH ERIFEGRPEAFGRNVLALLNAQAQNHAAPHRGARIKG HHHHCCCCHHHCCHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure SPEFSLEQFESLVASRDYETAHEALVGLINTFISNRSRLPGVDLAFADPTRPASKEGTS CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCHHH TLQRIADAITALLAAPQFRLNDLQFNQLFSSRHWLNMLFVASSYGSVDHILRALLAHPPR HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC PDDPEAAKALTRKQIVLYTIESEFDIDLADLAKSDPVLATSLGMSVVSSAVVISPAAHEK CCCHHHHHHHHHCEEEEEEECCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHEECCCHHHH RERLIEWLPRALESIADLDDLPGPAVCGAYMHCSYSDLPNRHAMKRGISQLVRRKLGELG HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHC LLAHEADVGCVPLLDNTRECESGTTRKPLMIVVLEWFNGGHSIYRTHSRTMLAARERFEV CEEECCCCCEEECCCCCHHHCCCCCCCCEEEEEEECCCCCCCEEHHHHHHHHHHHHCEEE VAFGEAQHVDAAGREVFDRFIPFEHPEYVGEIVRQIQTFARENPPAVLYMPSVGMFPHTI EEECCCHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEE FMTNVRVAPLQIAALGHPATMHAQCIDYVSVEEDFVGDPACFSEKLMRLPKDGQPYVPSK EEECCEECCEEEEECCCCHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHCCCCCCCCCCHH LLTDITPSVPARGAYLNIAVTASAMKLNPRFLDACRQIIETAGIRVCFHFMTSWSEGLDI HHHHCCCCCCCCCCEEEEEEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH AYVRKLVESAIPRSNVLVYGGLSYSTYLKVINAMDMFVSPFPFGNTNGIVDAFTLGLPGV HHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCC NLCGPEVFEHIDSGLFERAGMPAWLTAHSIDEYVRAAVRLATQHDEREALRRQMIEKKAV CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH ERIFEGRPEAFGRNVLALLNAQAQNHAAPHRGARIKG HHHHCCCCHHHCCHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA