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The map label for this gene is yiaD [H]

Identifier: 186476941

GI number: 186476941

Start: 2458493

End: 2459146

Strand: Direct

Name: yiaD [H]

Synonym: Bphy_2190

Alternate gene names: 186476941

Gene position: 2458493-2459146 (Clockwise)

Preceding gene: 186476935

Following gene: 186476942

Centisome position: 70.66

GC content: 66.97

Gene sequence:

>654_bases
ATGATGAATGCAAAAATCATGACCCGCGTGTCGGCACTGGCCGTCGTCGGCGCGCTGCTCGCCGGCTGCGCGACGGAACA
AGGCACGAACACGGCCGTGGGAACGGGCGTCGGCGCCGGCACGGGCGCTGCGCTGGGCGCGATTTTCGGCGGCGGCAAGG
GCGCGGCGATCGGCGCAGGCGTCGGCGCGGCAGTCGGCGGCGTGACCGGCTACAACTGGCAGAACATCAAGAACAAGCTG
GGCGGCGCGACGAAGGGCACGGGCACCCAGATCACCGAGCAGCCGGACGGCTCGCTCAAGCTGAACATCCCGAGTTCGGT
CACGTTCGACACCAATAGCTACGCGATCAAGCCGTCGTTTGCGCCGGTTCTGTCGCAGGTCGCACAAACGCTGAACCAGA
ATCCGGAAGTGGTTGCGCAAGTGGTGGGCCACACCGATAGCACGGGTCAGCCCGCATACAACCAGACGCTGTCCGTCAAC
CGCGCGCAGAGCGTCGCGCAGCAACTCGCGACGGACGGTGTCGCGCCGCAGCGCCTGTCGGCTACAGGCATGGGCGCGAA
CCAGCCGATCGCCGACAACAACACGGAAACGGGCCGCGCGCAGAACCGTCGCGTGGAGATCTATCTGCGCGCAACGGCGC
AGCACGCCCAGTAA

Upstream 100 bases:

>100_bases
ATTGTAGTGGCTGACGCCGGGGCCTGCCGGAAGACCCTTTTCAGCTGTCGGCGCGCTTTGCGAGCCTTGCATCGACCGTT
TATTCAAGAGAGGACCCAAT

Downstream 100 bases:

>100_bases
TGGTTGGAGACGACGCGTCTTCGCTGCCAGTCAGCGAAGACCGTTCGACAAACATGATCGCGGCTTGGCCTGTCCGCCAG
AAGGTTCGCACAACAGCTCG

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MMNAKIMTRVSALAVVGALLAGCATEQGTNTAVGTGVGAGTGAALGAIFGGGKGAAIGAGVGAAVGGVTGYNWQNIKNKL
GGATKGTGTQITEQPDGSLKLNIPSSVTFDTNSYAIKPSFAPVLSQVAQTLNQNPEVVAQVVGHTDSTGQPAYNQTLSVN
RAQSVAQQLATDGVAPQRLSATGMGANQPIADNNTETGRAQNRRVEIYLRATAQHAQ

Sequences:

>Translated_217_residues
MMNAKIMTRVSALAVVGALLAGCATEQGTNTAVGTGVGAGTGAALGAIFGGGKGAAIGAGVGAAVGGVTGYNWQNIKNKL
GGATKGTGTQITEQPDGSLKLNIPSSVTFDTNSYAIKPSFAPVLSQVAQTLNQNPEVVAQVVGHTDSTGQPAYNQTLSVN
RAQSVAQQLATDGVAPQRLSATGMGANQPIADNNTETGRAQNRRVEIYLRATAQHAQ
>Mature_217_residues
MMNAKIMTRVSALAVVGALLAGCATEQGTNTAVGTGVGAGTGAALGAIFGGGKGAAIGAGVGAAVGGVTGYNWQNIKNKL
GGATKGTGTQITEQPDGSLKLNIPSSVTFDTNSYAIKPSFAPVLSQVAQTLNQNPEVVAQVVGHTDSTGQPAYNQTLSVN
RAQSVAQQLATDGVAPQRLSATGMGANQPIADNNTETGRAQNRRVEIYLRATAQHAQ

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=214, Percent_Identity=42.5233644859813, Blast_Score=113, Evalue=8e-27,
Organism=Escherichia coli, GI1788957, Length=114, Percent_Identity=35.0877192982456, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787191, Length=121, Percent_Identity=35.5371900826446, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786962, Length=98, Percent_Identity=34.6938775510204, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 21820; Mature: 21820

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNAKIMTRVSALAVVGALLAGCATEQGTNTAVGTGVGAGTGAALGAIFGGGKGAAIGAG
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEECCC
VGAAVGGVTGYNWQNIKNKLGGATKGTGTQITEQPDGSLKLNIPSSVTFDTNSYAIKPSF
HHHHHCCCCCCCHHHHHHHHCCCCCCCCCEECCCCCCCEEEECCCCEEECCCCEEECCCH
APVLSQVAQTLNQNPEVVAQVVGHTDSTGQPAYNQTLSVNRAQSVAQQLATDGVAPQRLS
HHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHC
ATGMGANQPIADNNTETGRAQNRRVEIYLRATAQHAQ
CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCC
>Mature Secondary Structure
MMNAKIMTRVSALAVVGALLAGCATEQGTNTAVGTGVGAGTGAALGAIFGGGKGAAIGAG
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEECCC
VGAAVGGVTGYNWQNIKNKLGGATKGTGTQITEQPDGSLKLNIPSSVTFDTNSYAIKPSF
HHHHHCCCCCCCHHHHHHHHCCCCCCCCCEECCCCCCCEEEECCCCEEECCCCEEECCCH
APVLSQVAQTLNQNPEVVAQVVGHTDSTGQPAYNQTLSVNRAQSVAQQLATDGVAPQRLS
HHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHC
ATGMGANQPIADNNTETGRAQNRRVEIYLRATAQHAQ
CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]