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The map label for this gene is exbD1 [H]

Identifier: 186476702

GI number: 186476702

Start: 2191732

End: 2192151

Strand: Direct

Name: exbD1 [H]

Synonym: Bphy_1947

Alternate gene names: 186476702

Gene position: 2191732-2192151 (Clockwise)

Preceding gene: 186476701

Following gene: 186476704

Centisome position: 63.0

GC content: 60.95

Gene sequence:

>420_bases
ATGGCAATGAGCCCTTTTGCCGGCGACGAAGACGACGGCCTCATGAACGAGATCAACATGACGCCCCTCGTCGACGTCAT
GTTGGTTCTCCTGATCGTGTTCATGGTGACCATCCCCGTGATACGCCACGCGGTGAAGATCGACCTGCCGCACGCGAGCA
GCCAGAAGGAAGACATGAAGCCCGCGCAGGTGACGGTATCGATCGACGCCGACGGCAACGTGATGTGGGACGAACAGAAG
ATTTCCGACGACACGCTGCAGGCGAAAATCGCCGCGGCTGCGCAGCAGAATCCGCAGCCCGAACTGCATCTGAGCGCGGA
TCGCAAGGTCGCGTACGAGAAAGTTGCCGAGGTGATGTCGGCTGCACAGGCGGGCGGTCTGACCAAGATCGGATTCGTCA
CCGCGCCGAAGGCGCACTGA

Upstream 100 bases:

>100_bases
CTGCATGCGTTCTTCGTCACGGGCGCGCGCCTGTCGTCGTCGAAACGCGGCGACGGTCTTCGGCTCGCGACCCGCACCAA
CTAAATAGCGAGGCATAGCG

Downstream 100 bases:

>100_bases
ACGCGCCCCCGCCCTGATTCGAAGAAAAGCCCTGTTTTCAGGGTTCAAAGTAAAAGGCCTTCATCGTCGGATGAAGGCCT
TTTTTCATGCGCACTCGGCG

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 138

Protein sequence:

>139_residues
MAMSPFAGDEDDGLMNEINMTPLVDVMLVLLIVFMVTIPVIRHAVKIDLPHASSQKEDMKPAQVTVSIDADGNVMWDEQK
ISDDTLQAKIAAAAQQNPQPELHLSADRKVAYEKVAEVMSAAQAGGLTKIGFVTAPKAH

Sequences:

>Translated_139_residues
MAMSPFAGDEDDGLMNEINMTPLVDVMLVLLIVFMVTIPVIRHAVKIDLPHASSQKEDMKPAQVTVSIDADGNVMWDEQK
ISDDTLQAKIAAAAQQNPQPELHLSADRKVAYEKVAEVMSAAQAGGLTKIGFVTAPKAH
>Mature_138_residues
AMSPFAGDEDDGLMNEINMTPLVDVMLVLLIVFMVTIPVIRHAVKIDLPHASSQKEDMKPAQVTVSIDADGNVMWDEQKI
SDDTLQAKIAAAAQQNPQPELHLSADRKVAYEKVAEVMSAAQAGGLTKIGFVTAPKAH

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=133, Percent_Identity=34.5864661654135, Blast_Score=84, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 14994; Mature: 14863

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.5 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMSPFAGDEDDGLMNEINMTPLVDVMLVLLIVFMVTIPVIRHAVKIDLPHASSQKEDMK
CCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCC
PAQVTVSIDADGNVMWDEQKISDDTLQAKIAAAAQQNPQPELHLSADRKVAYEKVAEVMS
CEEEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHH
AAQAGGLTKIGFVTAPKAH
HHHCCCCEEEEEECCCCCC
>Mature Secondary Structure 
AMSPFAGDEDDGLMNEINMTPLVDVMLVLLIVFMVTIPVIRHAVKIDLPHASSQKEDMK
CCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCC
PAQVTVSIDADGNVMWDEQKISDDTLQAKIAAAAQQNPQPELHLSADRKVAYEKVAEVMS
CEEEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHH
AAQAGGLTKIGFVTAPKAH
HHHCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]