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The map label for this gene is ypdB [C]

Identifier: 183221880

GI number: 183221880

Start: 2598297

End: 2599064

Strand: Reverse

Name: ypdB [C]

Synonym: LEPBI_I2515

Alternate gene names: 183221880

Gene position: 2599064-2598297 (Counterclockwise)

Preceding gene: 183221881

Following gene: 183221879

Centisome position: 72.2

GC content: 32.16

Gene sequence:

>768_bases
ATGAAAATTTTAATATTAGAAGATGAGCCAGTTCACGCAAAATTTCTTACGAAATTATTAAATATAGTTTTGGAATCTTC
AATAAAAGAAATCAAACATGTAACCTCTATCGATGAAGCGGATAAAGAATTAAAATCCTCACCAATCGATTTACTTTTTT
TAGATCTTAATATTTTTGGATTCGATGGTTTTGATATATTAGAGAGAATTCCTACAATTTTTACGAATACGATTGTCGTT
TCAGCAAATACTGATAACGCCATTCGTGCATTCGAATATGGTGTAATTGATTTTATCCCGAAGCCTATTTCGGAAGAACG
ATTGCGGTTAGCATTGGAAAGACATTCTCTTTTTGCGATCACCTACCAAAAAGGAGGTGACCAACAAAAAAATGTGAAAT
CCCGATTATTACAAGTGGATTTGGATCGAGTTCAAAATCGGCTATTGCACTTAATGGAGATAGAAAAAATATATTTAAAT
GAGGATTTAACTCTCGAAGTTCTCGCCGAAGAATTGGAGTTACACCCGAGGCAACTATCTGAATTTTTAAATGGTAAAAA
ACAAACAACATTTAACTCCTTTTTACATAGTTATCGGATCAAAGAGGCAAAAGTACTTTTGCTCAAATATCCAGAAAAAA
ATGTAAGTGACATTGGTTTTGAAGTTGGTTACAAATCACTTTCCAGTTTTTACGAAGCCTTCAAAAAAGAATTAAAAATT
ACGGCATCAGAATTCAGGCAAAAAAATTCAATCTCAGAAACCACATAA

Upstream 100 bases:

>100_bases
AGACTTCGGTTAGAGGAATCTTATTCTGGCAAGTGGTCTTTGCTACATGGAAAATCTAAAAAAGGATATCGGGTTATCAT
TCAAATCCAAACTCTATAAA

Downstream 100 bases:

>100_bases
CAGAAATTAGTTTTTTATGAATTCATTACTGTAAGATTATTTCTTACATTGTTACTTACGAAATAGAGAAAATCTTATTC
CAAATTAAAAAAAATTAAAT

Product: putative two-component response regulator

Products: NA

Alternate protein names: LytTR Family Two Component Transcriptional Regulator; Two-Component Response Regulator; Two Component Transcriptional Regulator LytTR Family; Transcriptional Regulator AraC Family; LytR/AlgR Family Transcriptional Regulator; Sensory Transduction Protein; LytT Family Two-Component Response Regulator

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MKILILEDEPVHAKFLTKLLNIVLESSIKEIKHVTSIDEADKELKSSPIDLLFLDLNIFGFDGFDILERIPTIFTNTIVV
SANTDNAIRAFEYGVIDFIPKPISEERLRLALERHSLFAITYQKGGDQQKNVKSRLLQVDLDRVQNRLLHLMEIEKIYLN
EDLTLEVLAEELELHPRQLSEFLNGKKQTTFNSFLHSYRIKEAKVLLLKYPEKNVSDIGFEVGYKSLSSFYEAFKKELKI
TASEFRQKNSISETT

Sequences:

>Translated_255_residues
MKILILEDEPVHAKFLTKLLNIVLESSIKEIKHVTSIDEADKELKSSPIDLLFLDLNIFGFDGFDILERIPTIFTNTIVV
SANTDNAIRAFEYGVIDFIPKPISEERLRLALERHSLFAITYQKGGDQQKNVKSRLLQVDLDRVQNRLLHLMEIEKIYLN
EDLTLEVLAEELELHPRQLSEFLNGKKQTTFNSFLHSYRIKEAKVLLLKYPEKNVSDIGFEVGYKSLSSFYEAFKKELKI
TASEFRQKNSISETT
>Mature_255_residues
MKILILEDEPVHAKFLTKLLNIVLESSIKEIKHVTSIDEADKELKSSPIDLLFLDLNIFGFDGFDILERIPTIFTNTIVV
SANTDNAIRAFEYGVIDFIPKPISEERLRLALERHSLFAITYQKGGDQQKNVKSRLLQVDLDRVQNRLLHLMEIEKIYLN
EDLTLEVLAEELELHPRQLSEFLNGKKQTTFNSFLHSYRIKEAKVLLLKYPEKNVSDIGFEVGYKSLSSFYEAFKKELKI
TASEFRQKNSISETT

Specific function: Unknown

COG id: COG4753

COG function: function code T; Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29481; Mature: 29481

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2 ; PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILILEDEPVHAKFLTKLLNIVLESSIKEIKHVTSIDEADKELKSSPIDLLFLDLNIFG
CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEC
FDGFDILERIPTIFTNTIVVSANTDNAIRAFEYGVIDFIPKPISEERLRLALERHSLFAI
CCCHHHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEEE
TYQKGGDQQKNVKSRLLQVDLDRVQNRLLHLMEIEKIYLNEDLTLEVLAEELELHPRQLS
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHH
EFLNGKKQTTFNSFLHSYRIKEAKVLLLKYPEKNVSDIGFEVGYKSLSSFYEAFKKELKI
HHHCCCCCHHHHHHHHHHHHCHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TASEFRQKNSISETT
HHHHHHHHCCCCCCC
>Mature Secondary Structure
MKILILEDEPVHAKFLTKLLNIVLESSIKEIKHVTSIDEADKELKSSPIDLLFLDLNIFG
CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEC
FDGFDILERIPTIFTNTIVVSANTDNAIRAFEYGVIDFIPKPISEERLRLALERHSLFAI
CCCHHHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEEE
TYQKGGDQQKNVKSRLLQVDLDRVQNRLLHLMEIEKIYLNEDLTLEVLAEELELHPRQLS
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHH
EFLNGKKQTTFNSFLHSYRIKEAKVLLLKYPEKNVSDIGFEVGYKSLSSFYEAFKKELKI
HHHCCCCCHHHHHHHHHHHHCHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TASEFRQKNSISETT
HHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA