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The map label for this gene is yiaD [H]

Identifier: 183221257

GI number: 183221257

Start: 1964275

End: 1965090

Strand: Direct

Name: yiaD [H]

Synonym: LEPBI_I1873

Alternate gene names: 183221257

Gene position: 1964275-1965090 (Clockwise)

Preceding gene: 183221256

Following gene: 183221259

Centisome position: 54.57

GC content: 41.42

Gene sequence:

>816_bases
ATGGAAATCCTCCTTGCAAACAAGGAGGATTTCTTTAAACTTTGTCCGAAACCTTCAAATCGAAGGGAAAAGAGGACAAT
CACTTTGAAACAAATCATCTCAGGAATTTTATCCCTATCATTACTATCCACAATTTCTTGTGGTCTATCAGACAACACGA
AACGACTGATCCTAAGTACATCCATTGGATGTGGTGTTGGACTTGCGTTAGGTGCTGTTTATGACGAATCACAAAGAAAA
AAAGACACTAAAAACAAAAAGAATGATTTCCAAAGACAAGTGAAAGAATCCTTGACGATGGAAAAAAAGAAACCACAAAA
CAAAGGTAAGATCATTGGTTTGGGCGCGGGTTGCCTTGCTGGTCTTGGAACTGGTTTTTATCTGAATACTATGTATGATA
ACATGGCAGAAGAGATGAAAAAACAAGGTATCACTCTGACTAAAAGTGAACGTGGTGGAGAAACAGTGGCACTCACGGCA
ACGATGGACGGTGGAATTGCCTTTGAAGATGGAAAAGCAGACCTCAAAGGGAAAGGAAAAGAAAACGTTGATAAGTTAGC
GGAAGCTCTTGCGGCCTACCCTGAAACCAAAATCAATATCACTGGACATGCCAATCGAACTGGCGCAGAAGACCTAAACC
TCAGACTTTCGCAAGACAGAGCTGTGACTGCAAAAGATGCCATCATTGAAAATGGAGTGGAAGGAAAACGAATTGGAACT
GTCCAAGGACTTGGTTCCTCTACACCAATGAAAAACGTGGATCCTAAAGATGGATCGAACCGACGTGTGGAAGTAGAAAT
CGTTCCCGCTAGTTAA

Upstream 100 bases:

>100_bases
ATCCTAACCAAATCAGGTGTGGCCATGCTGGCACAAGCAAATCTCAGACCAGAATCAGTAGTAAAACTCCTCACGGACAG
ATACTAAGGTTTTTTAAGAG

Downstream 100 bases:

>100_bases
TCACAAAAAATAAAAGATTCGAGAAGATCTCTCGATAAAAAAAGCCTACAAAGAAACTTTGTAGGCTTTTTCTTTTTGGA
TCTGAATCTAAAGTTCTTTT

Product: OmpA domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MEILLANKEDFFKLCPKPSNRREKRTITLKQIISGILSLSLLSTISCGLSDNTKRLILSTSIGCGVGLALGAVYDESQRK
KDTKNKKNDFQRQVKESLTMEKKKPQNKGKIIGLGAGCLAGLGTGFYLNTMYDNMAEEMKKQGITLTKSERGGETVALTA
TMDGGIAFEDGKADLKGKGKENVDKLAEALAAYPETKINITGHANRTGAEDLNLRLSQDRAVTAKDAIIENGVEGKRIGT
VQGLGSSTPMKNVDPKDGSNRRVEVEIVPAS

Sequences:

>Translated_271_residues
MEILLANKEDFFKLCPKPSNRREKRTITLKQIISGILSLSLLSTISCGLSDNTKRLILSTSIGCGVGLALGAVYDESQRK
KDTKNKKNDFQRQVKESLTMEKKKPQNKGKIIGLGAGCLAGLGTGFYLNTMYDNMAEEMKKQGITLTKSERGGETVALTA
TMDGGIAFEDGKADLKGKGKENVDKLAEALAAYPETKINITGHANRTGAEDLNLRLSQDRAVTAKDAIIENGVEGKRIGT
VQGLGSSTPMKNVDPKDGSNRRVEVEIVPAS
>Mature_271_residues
MEILLANKEDFFKLCPKPSNRREKRTITLKQIISGILSLSLLSTISCGLSDNTKRLILSTSIGCGVGLALGAVYDESQRK
KDTKNKKNDFQRQVKESLTMEKKKPQNKGKIIGLGAGCLAGLGTGFYLNTMYDNMAEEMKKQGITLTKSERGGETVALTA
TMDGGIAFEDGKADLKGKGKENVDKLAEALAAYPETKINITGHANRTGAEDLNLRLSQDRAVTAKDAIIENGVEGKRIGT
VQGLGSSTPMKNVDPKDGSNRRVEVEIVPAS

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=146, Percent_Identity=34.2465753424658, Blast_Score=91, Evalue=9e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 29207; Mature: 29207

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEILLANKEDFFKLCPKPSNRREKRTITLKQIISGILSLSLLSTISCGLSDNTKRLILST
CEEEECCCHHHHHHCCCCCCCCHHHEEEHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
SIGCGVGLALGAVYDESQRKKDTKNKKNDFQRQVKESLTMEKKKPQNKGKIIGLGAGCLA
CCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHH
GLGTGFYLNTMYDNMAEEMKKQGITLTKSERGGETVALTATMDGGIAFEDGKADLKGKGK
HCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCEEEEEEEECCCEEEECCCCCCCCCCC
ENVDKLAEALAAYPETKINITGHANRTGAEDLNLRLSQDRAVTAKDAIIENGVEGKRIGT
CCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCEEEE
VQGLGSSTPMKNVDPKDGSNRRVEVEIVPAS
EECCCCCCCCCCCCCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MEILLANKEDFFKLCPKPSNRREKRTITLKQIISGILSLSLLSTISCGLSDNTKRLILST
CEEEECCCHHHHHHCCCCCCCCHHHEEEHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
SIGCGVGLALGAVYDESQRKKDTKNKKNDFQRQVKESLTMEKKKPQNKGKIIGLGAGCLA
CCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHH
GLGTGFYLNTMYDNMAEEMKKQGITLTKSERGGETVALTATMDGGIAFEDGKADLKGKGK
HCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCEEEEEEEECCCEEEECCCCCCCCCCC
ENVDKLAEALAAYPETKINITGHANRTGAEDLNLRLSQDRAVTAKDAIIENGVEGKRIGT
CCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCEEEE
VQGLGSSTPMKNVDPKDGSNRRVEVEIVPAS
EECCCCCCCCCCCCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]