| Definition | Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_010602 |
| Length | 3,599,677 |
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The map label for this gene is ctpA [H]
Identifier: 183219892
GI number: 183219892
Start: 469124
End: 470968
Strand: Reverse
Name: ctpA [H]
Synonym: LEPBI_I0474
Alternate gene names: 183219892
Gene position: 470968-469124 (Counterclockwise)
Preceding gene: 183219894
Following gene: 183219891
Centisome position: 13.08
GC content: 38.21
Gene sequence:
>1845_bases TTGAAACGATTTGTTTATCTACTTTCCTTTTTCACCCTTCTAAGTTTTGCCCTCCCAGTTGGGTTTATTTCCTGCGAACC AGAAGCGAAAAAAGCGCAAAACCGCGAGACCAATTTCACATACGTAGACTTCGAAACAGTCATTCGAACAGTGGACAAAC TGTATATTGACAAACACATCAATGTCAACCGAGCTTACACGGATGCAGCCAGTTTTGCTTTTTTAAGTTTACCCCATCCG CTTTATATTTATCCGGAAAGTTATTTTAAAGAGAGAGAAAAATACGACGATAAAGAGGACCTTTGGCCAGGAACTACGTT CAAAATCTCTCCTTCTGATAAATTTGTAGTTTTTGATCCTGATTATGCCCAGGTGGAAAAAATCCAAAAAGAAAAACGGA AAAAAAATGAAAACCGTAAGTTATCAGATGCAGAGCTCAAAAAACTGATCGAAAAAGAAAAATTAAAAAAATCAGTCATC TCTGCACGTTGGGAAGAAATCAATTTTTCCAGAAAAGATTTTGACCGAGTCGTTACATACATCCAAGACAATTTAGAAAA ATACAAAACTCCAGTTTTAAAAGGATTAGTAGAACTTGATGGGGAACTTCCCGATGACGAGGAAGAAGACAAAAAAGAGT TCCGCATGGAACAAGTGTTTGTTGCGGCGGCAAATGGTTATCTCAATTCTCTCGATCCACACTCCAATGTATTTTTAGAG GAAGTTTGGGAAGAATCCATGTCCAAAATCAGCGATGGTTCCTTTGAAGGAATCGGAGCTATCCTTTCTGGTGGAGGAAG CCGAGAAGTCATCGTTGAAAATCCATTAGAAGGTAGCCCGGCCCTCAAAGCCGGAATCCGCAGTGGAGATAACATTGTGG CTGTAGATGGTAAACTCATCAAAAATTTATCCCTTGATAAAGTGGTTAAAAAAATCAAAGGACCTAAAGCCACCAAAGTT GTGTTAACCATCTCTCGAAAAGGGAATACAGGAAAAATTGATATCGAAGTGATTCGTGATAAAATCACAATCAAAAATGT TACCTACCATCTCGTAAAAGAAAATCCACAAGTGGCTTATATCAAACTGACAGGATTTGTAAAACCTGGAAATGGGGAAC CACCAATTGATACTCAAATTGCAGATGCACTTGCTGAAATGGAAAGAACGGCAAAAGAGAATGGAAAACCACTTAAGGCC GTTATTTTGGATTTACGTGGTAACTCTGGTGGGTATTTAGATTTAGCAGTCGATATCGCAGATATGTTTATCGAAAAAGG AATCATTGTTTCTACAAGAACTCCTGGAAGAAGTGATGAAGAAAAACCTGCAAAAATCAAAGATATCACAAAACTACCGT TAGCAATTCTTATGAATTCTAAATCTGCCTCCGCATCTGAAATTGTTGCCAGTGCCATCCAACACCATGGAAGAGGAATT TTACTTGGGGAAAGAACCTTTGGAAAAGCAACAGTTCAAACACTCAAAAAATTAGATAATAATCCAAATTATCTCTTAAA AATTACCAATGCGAGATACTATTCTCCATCTGGAAAAACCATCCAAGTGGTAGGAGTCTCACCAGACATCGAAGTTTCAG AAGAAGCAGATGGAACCTTCCCTTTCCGATACCGTGAAGAAGATATGTGGAACCACTTACCACTCATCCCTCACGAAGGA GTTGTTAAGTCTCGATTCAATATCAATGCGATCAAAGACTATGCCAAAAAGAATGGAAAGGCAGATACGTATTTGAAAGA ACATTCCAATGATGCCATCAAACCGGATTATATGTTGATTCGAAGTTTGGATTATATCGAAGGGATGATCAATACAAAAT CATAG
Upstream 100 bases:
>100_bases GTTATACATGAGTCCTAGATTTGTCCCGATTTTTTTTGTGTTGCCTACGCTGGAAATTCGGAAATTCTTAGGATAATCTA TTCACGAAACGAGAGATCCA
Downstream 100 bases:
>100_bases ATTCCTAATTGGGATTTTATTGAAAGTATTTTGAATACAATTGGATAGAATGTGACACGAATTAAATCAGATTTCCTGAT CATTGGAAGCGGAGTGAGTG
Product: S41 family peptidase
Products: NA
Alternate protein names: C-terminal-processing protease [H]
Number of amino acids: Translated: 614; Mature: 614
Protein sequence:
>614_residues MKRFVYLLSFFTLLSFALPVGFISCEPEAKKAQNRETNFTYVDFETVIRTVDKLYIDKHINVNRAYTDAASFAFLSLPHP LYIYPESYFKEREKYDDKEDLWPGTTFKISPSDKFVVFDPDYAQVEKIQKEKRKKNENRKLSDAELKKLIEKEKLKKSVI SARWEEINFSRKDFDRVVTYIQDNLEKYKTPVLKGLVELDGELPDDEEEDKKEFRMEQVFVAAANGYLNSLDPHSNVFLE EVWEESMSKISDGSFEGIGAILSGGGSREVIVENPLEGSPALKAGIRSGDNIVAVDGKLIKNLSLDKVVKKIKGPKATKV VLTISRKGNTGKIDIEVIRDKITIKNVTYHLVKENPQVAYIKLTGFVKPGNGEPPIDTQIADALAEMERTAKENGKPLKA VILDLRGNSGGYLDLAVDIADMFIEKGIIVSTRTPGRSDEEKPAKIKDITKLPLAILMNSKSASASEIVASAIQHHGRGI LLGERTFGKATVQTLKKLDNNPNYLLKITNARYYSPSGKTIQVVGVSPDIEVSEEADGTFPFRYREEDMWNHLPLIPHEG VVKSRFNINAIKDYAKKNGKADTYLKEHSNDAIKPDYMLIRSLDYIEGMINTKS
Sequences:
>Translated_614_residues MKRFVYLLSFFTLLSFALPVGFISCEPEAKKAQNRETNFTYVDFETVIRTVDKLYIDKHINVNRAYTDAASFAFLSLPHP LYIYPESYFKEREKYDDKEDLWPGTTFKISPSDKFVVFDPDYAQVEKIQKEKRKKNENRKLSDAELKKLIEKEKLKKSVI SARWEEINFSRKDFDRVVTYIQDNLEKYKTPVLKGLVELDGELPDDEEEDKKEFRMEQVFVAAANGYLNSLDPHSNVFLE EVWEESMSKISDGSFEGIGAILSGGGSREVIVENPLEGSPALKAGIRSGDNIVAVDGKLIKNLSLDKVVKKIKGPKATKV VLTISRKGNTGKIDIEVIRDKITIKNVTYHLVKENPQVAYIKLTGFVKPGNGEPPIDTQIADALAEMERTAKENGKPLKA VILDLRGNSGGYLDLAVDIADMFIEKGIIVSTRTPGRSDEEKPAKIKDITKLPLAILMNSKSASASEIVASAIQHHGRGI LLGERTFGKATVQTLKKLDNNPNYLLKITNARYYSPSGKTIQVVGVSPDIEVSEEADGTFPFRYREEDMWNHLPLIPHEG VVKSRFNINAIKDYAKKNGKADTYLKEHSNDAIKPDYMLIRSLDYIEGMINTKS >Mature_614_residues MKRFVYLLSFFTLLSFALPVGFISCEPEAKKAQNRETNFTYVDFETVIRTVDKLYIDKHINVNRAYTDAASFAFLSLPHP LYIYPESYFKEREKYDDKEDLWPGTTFKISPSDKFVVFDPDYAQVEKIQKEKRKKNENRKLSDAELKKLIEKEKLKKSVI SARWEEINFSRKDFDRVVTYIQDNLEKYKTPVLKGLVELDGELPDDEEEDKKEFRMEQVFVAAANGYLNSLDPHSNVFLE EVWEESMSKISDGSFEGIGAILSGGGSREVIVENPLEGSPALKAGIRSGDNIVAVDGKLIKNLSLDKVVKKIKGPKATKV VLTISRKGNTGKIDIEVIRDKITIKNVTYHLVKENPQVAYIKLTGFVKPGNGEPPIDTQIADALAEMERTAKENGKPLKA VILDLRGNSGGYLDLAVDIADMFIEKGIIVSTRTPGRSDEEKPAKIKDITKLPLAILMNSKSASASEIVASAIQHHGRGI LLGERTFGKATVQTLKKLDNNPNYLLKITNARYYSPSGKTIQVVGVSPDIEVSEEADGTFPFRYREEDMWNHLPLIPHEG VVKSRFNINAIKDYAKKNGKADTYLKEHSNDAIKPDYMLIRSLDYIEGMINTKS
Specific function: Involved in protection of the bacterium from thermal and osmotic stresses (Potential) [H]
COG id: COG0793
COG function: function code M; Periplasmic protease
Gene ontology:
Cell location: Secreted (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PDZ (DHR) domain [H]
Homologues:
Organism=Escherichia coli, GI1788134, Length=335, Percent_Identity=32.5373134328358, Blast_Score=130, Evalue=2e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001478 - InterPro: IPR005151 - InterPro: IPR004447 [H]
Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]
EC number: =3.4.21.102 [H]
Molecular weight: Translated: 69194; Mature: 69194
Theoretical pI: Translated: 7.78; Mature: 7.78
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50106 PDZ
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRFVYLLSFFTLLSFALPVGFISCEPEAKKAQNRETNFTYVDFETVIRTVDKLYIDKHI CCHHHHHHHHHHHHHHHHHCCEEECCCHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHCCC NVNRAYTDAASFAFLSLPHPLYIYPESYFKEREKYDDKEDLWPGTTFKISPSDKFVVFDP CCCCCHHHHHHEEEEECCCCEEECCHHHHHHHHHCCCHHHCCCCCEEEECCCCEEEEECC DYAQVEKIQKEKRKKNENRKLSDAELKKLIEKEKLKKSVISARWEEINFSRKDFDRVVTY CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH IQDNLEKYKTPVLKGLVELDGELPDDEEEDKKEFRMEQVFVAAANGYLNSLDPHSNVFLE HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHEEHHCCCCCCCCCCCCHHHH EVWEESMSKISDGSFEGIGAILSGGGSREVIVENPLEGSPALKAGIRSGDNIVAVDGKLI HHHHHHHHHCCCCCCCCHHHHHCCCCCCEEEEECCCCCCHHHHHHCCCCCCEEEECCHHH KNLSLDKVVKKIKGPKATKVVLTISRKGNTGKIDIEVIRDKITIKNVTYHLVKENPQVAY HCCCHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEEEECEEEEEEEEEEEEECCCCEEE IKLTGFVKPGNGEPPIDTQIADALAEMERTAKENGKPLKAVILDLRGNSGGYLDLAVDIA EEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCEEEEEHHHH DMFIEKGIIVSTRTPGRSDEEKPAKIKDITKLPLAILMNSKSASASEIVASAIQHHGRGI HHHHHCCEEEEECCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHCCCEE LLGERTFGKATVQTLKKLDNNPNYLLKITNARYYSPSGKTIQVVGVSPDIEVSEEADGTF EEECCCCCHHHHHHHHHHCCCCCEEEEEECCEEECCCCCEEEEEECCCCCEECCCCCCCC PFRYREEDMWNHLPLIPHEGVVKSRFNINAIKDYAKKNGKADTYLKEHSNDAIKPDYMLI CEEECCHHHHCCCCCCCCCCCHHCCCCHHHHHHHHHCCCCCCHHHHHCCCCCCCCCHHHH RSLDYIEGMINTKS HHHHHHHHHHCCCC >Mature Secondary Structure MKRFVYLLSFFTLLSFALPVGFISCEPEAKKAQNRETNFTYVDFETVIRTVDKLYIDKHI CCHHHHHHHHHHHHHHHHHCCEEECCCHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHCCC NVNRAYTDAASFAFLSLPHPLYIYPESYFKEREKYDDKEDLWPGTTFKISPSDKFVVFDP CCCCCHHHHHHEEEEECCCCEEECCHHHHHHHHHCCCHHHCCCCCEEEECCCCEEEEECC DYAQVEKIQKEKRKKNENRKLSDAELKKLIEKEKLKKSVISARWEEINFSRKDFDRVVTY CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH IQDNLEKYKTPVLKGLVELDGELPDDEEEDKKEFRMEQVFVAAANGYLNSLDPHSNVFLE HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHEEHHCCCCCCCCCCCCHHHH EVWEESMSKISDGSFEGIGAILSGGGSREVIVENPLEGSPALKAGIRSGDNIVAVDGKLI HHHHHHHHHCCCCCCCCHHHHHCCCCCCEEEEECCCCCCHHHHHHCCCCCCEEEECCHHH KNLSLDKVVKKIKGPKATKVVLTISRKGNTGKIDIEVIRDKITIKNVTYHLVKENPQVAY HCCCHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEEEECEEEEEEEEEEEEECCCCEEE IKLTGFVKPGNGEPPIDTQIADALAEMERTAKENGKPLKAVILDLRGNSGGYLDLAVDIA EEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCEEEEEHHHH DMFIEKGIIVSTRTPGRSDEEKPAKIKDITKLPLAILMNSKSASASEIVASAIQHHGRGI HHHHHCCEEEEECCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHCCCEE LLGERTFGKATVQTLKKLDNNPNYLLKITNARYYSPSGKTIQVVGVSPDIEVSEEADGTF EEECCCCCHHHHHHHHHHCCCCCEEEEEECCEEECCCCCEEEEEECCCCCEECCCCCCCC PFRYREEDMWNHLPLIPHEGVVKSRFNINAIKDYAKKNGKADTYLKEHSNDAIKPDYMLI CEEECCHHHHCCCCCCCCCCCHHCCCCHHHHHHHHHCCCCCCHHHHHCCCCCCCCCHHHH RSLDYIEGMINTKS HHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9141685 [H]