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The map label for this gene is ygiD [H]

Identifier: 183219470

GI number: 183219470

Start: 42885

End: 43727

Strand: Direct

Name: ygiD [H]

Synonym: LEPBI_I0043

Alternate gene names: 183219470

Gene position: 42885-43727 (Clockwise)

Preceding gene: 183219466

Following gene: 183219471

Centisome position: 1.19

GC content: 39.15

Gene sequence:

>843_bases
ATGAACGAATCTAAGTTTACTTCCAAATCAGACCAAAATAATGACAAAACCATCTATCCTTCCTTTTTTTTGGGACATGG
CAGTCCTATGAATGCCATTGAGGAAAATGAATTTGTCGAAGGTCTTCGTGGACTAACAAAGACCATCCCAAAACCGAAGG
CAATTCTAGCAATTTCAGCTCACTGGTTAACGGATGGAACATTTGTCACGGCGATGGAACATCCGCCCACCATACATGAT
TTTGGCGGATTTCCAAAGGCTTTATTTGATGTTCAATACCCTGCACCTGGGGATCCTAATTTAGCAAAGCAGATCCAAAC
GCTTGTAAAATCTCAATTGGTGCAATTGGATTACGAATGGGGTTTGGATCACGGAACTTGGAGCGTGTTAAAACATATTT
ATCCAGATGCAAACATACCTGTTGTCCAATTGAGTTTGGATTATAAACTTCCTCCGGAAAAACACTTACAAATCGCAAAG
GAACTTTTGCCATTAAGGAAACAAGGTATCCTCATCGTTGCAAGTGGAAACATTGTGCATAACTTACGTATGGTGGCCTG
GGATCGATTGAATGAAGTGTATGGATTTGATTGGGTTATGAATGTAAACCAAAAGGTGAAAGATTGGATTGTATCAAGTG
ATACTGAATCTTTACTCACTATTCAATCGAAAGGTAAAGAATTTGAATGGGCGATTCCCACAGCAGAACACTTCTTACCA
CTTTTATATACAATCGGGACACAATTGGAATCTGATTCAATTTCGTTTTTTAATGATAAACCAGTTGCTGGAGCATTGAC
GATGACTTCCGTACGTTTGGACTCTGACTTACATGAATCATAA

Upstream 100 bases:

>100_bases
AAAAATGAATCGAAGCAGAGAAAATAGATTGACAATAAATAGTTTGATATTAAACTAATAAAATCAGGGAGTCCGAGAGT
GGAAACACTTACGAAACCAA

Downstream 100 bases:

>100_bases
TTGTCGCTATAAATCTCCATATAAAGGTATCTAACGAATTTTTATGAATCCACCATTAACTTACTTAATCCGAAAGCCAA
AAGTTTCGATCAAAAATCCT

Product: aromatic-ring-opening dioxygenase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MNESKFTSKSDQNNDKTIYPSFFLGHGSPMNAIEENEFVEGLRGLTKTIPKPKAILAISAHWLTDGTFVTAMEHPPTIHD
FGGFPKALFDVQYPAPGDPNLAKQIQTLVKSQLVQLDYEWGLDHGTWSVLKHIYPDANIPVVQLSLDYKLPPEKHLQIAK
ELLPLRKQGILIVASGNIVHNLRMVAWDRLNEVYGFDWVMNVNQKVKDWIVSSDTESLLTIQSKGKEFEWAIPTAEHFLP
LLYTIGTQLESDSISFFNDKPVAGALTMTSVRLDSDLHES

Sequences:

>Translated_280_residues
MNESKFTSKSDQNNDKTIYPSFFLGHGSPMNAIEENEFVEGLRGLTKTIPKPKAILAISAHWLTDGTFVTAMEHPPTIHD
FGGFPKALFDVQYPAPGDPNLAKQIQTLVKSQLVQLDYEWGLDHGTWSVLKHIYPDANIPVVQLSLDYKLPPEKHLQIAK
ELLPLRKQGILIVASGNIVHNLRMVAWDRLNEVYGFDWVMNVNQKVKDWIVSSDTESLLTIQSKGKEFEWAIPTAEHFLP
LLYTIGTQLESDSISFFNDKPVAGALTMTSVRLDSDLHES
>Mature_280_residues
MNESKFTSKSDQNNDKTIYPSFFLGHGSPMNAIEENEFVEGLRGLTKTIPKPKAILAISAHWLTDGTFVTAMEHPPTIHD
FGGFPKALFDVQYPAPGDPNLAKQIQTLVKSQLVQLDYEWGLDHGTWSVLKHIYPDANIPVVQLSLDYKLPPEKHLQIAK
ELLPLRKQGILIVASGNIVHNLRMVAWDRLNEVYGFDWVMNVNQKVKDWIVSSDTESLLTIQSKGKEFEWAIPTAEHFLP
LLYTIGTQLESDSISFFNDKPVAGALTMTSVRLDSDLHES

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=264, Percent_Identity=45.4545454545455, Blast_Score=227, Evalue=5e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 31498; Mature: 31498

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNESKFTSKSDQNNDKTIYPSFFLGHGSPMNAIEENEFVEGLRGLTKTIPKPKAILAISA
CCCCCCCCCCCCCCCCEECCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEE
HWLTDGTFVTAMEHPPTIHDFGGFPKALFDVQYPAPGDPNLAKQIQTLVKSQLVQLDYEW
EEECCCEEEEEECCCCCHHHCCCCCHHHEEECCCCCCCCHHHHHHHHHHHHHHHEEEHHC
GLDHGTWSVLKHIYPDANIPVVQLSLDYKLPPEKHLQIAKELLPLRKQGILIVASGNIVH
CCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCEEEEECCCHHH
NLRMVAWDRLNEVYGFDWVMNVNQKVKDWIVSSDTESLLTIQSKGKEFEWAIPTAEHFLP
HHHHHHHHHHHHHHCCCEEECCCHHHHHHHHCCCCCCEEEEECCCCEEEEECCCHHHHHH
LLYTIGTQLESDSISFFNDKPVAGALTMTSVRLDSDLHES
HHHHHCCCCCCCCEEECCCCCCCCEEEEEEEEECCCCCCC
>Mature Secondary Structure
MNESKFTSKSDQNNDKTIYPSFFLGHGSPMNAIEENEFVEGLRGLTKTIPKPKAILAISA
CCCCCCCCCCCCCCCCEECCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEE
HWLTDGTFVTAMEHPPTIHDFGGFPKALFDVQYPAPGDPNLAKQIQTLVKSQLVQLDYEW
EEECCCEEEEEECCCCCHHHCCCCCHHHEEECCCCCCCCHHHHHHHHHHHHHHHEEEHHC
GLDHGTWSVLKHIYPDANIPVVQLSLDYKLPPEKHLQIAKELLPLRKQGILIVASGNIVH
CCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCEEEEECCCHHH
NLRMVAWDRLNEVYGFDWVMNVNQKVKDWIVSSDTESLLTIQSKGKEFEWAIPTAEHFLP
HHHHHHHHHHHHHHCCCEEECCCHHHHHHHHCCCCCCEEEEECCCCEEEEECCCHHHHHH
LLYTIGTQLESDSISFFNDKPVAGALTMTSVRLDSDLHES
HHHHHCCCCCCCCEEECCCCCCCCEEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]