Definition | Beijerinckia indica subsp. indica ATCC 9039 chromosome, complete genome. |
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Accession | NC_010581 |
Length | 4,170,153 |
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The map label for this gene is yusZ [H]
Identifier: 182677576
GI number: 182677576
Start: 644655
End: 645548
Strand: Direct
Name: yusZ [H]
Synonym: Bind_0581
Alternate gene names: 182677576
Gene position: 644655-645548 (Clockwise)
Preceding gene: 182677575
Following gene: 182677587
Centisome position: 15.46
GC content: 63.98
Gene sequence:
>894_bases ATGGGACAGGTTATCGTCATCACCGGCGCTTCCAGCGGCTTCGGAGCGCTGACGGCTCGAGCCCTCGCCGATGCCGGGCA TATTGTCTATGCCGGTATGCGCGACACCGCCGGACGCAATGCGCCGCAGGTCGAAGCCGCCAAAGCTTATGCGAAAGAAC GCGCCGTCGATCTCCATACGGTCGAGATGGATGTTCAATCCGAAGCGTCCGTTGAGGCCGCGATCGCGACGATTCTGCGA GAGAACAGCCGGCTCGACACTTTGGTCCATAACGCCGGGCACATGGTGTTTGGCCCGGCCGAGGCCTTCACTCCGGAACA ATATGCTCAGCTCTATGATGTGAACGTGCTGGGCACCCAACGCGTCAACCGCGCCGCGCTGCCGATCCTGAGACGGCAAG GCAAGGGTCTGCTCGTGTGGGTCTCCTCGACCAGCACGCGCGGCGGCACACCACCATGGCTTGCGCCCTATTTTGCTGCC AAGGCGGCGATGGATTCGCTGGCGGTCAGCTATGCCGGCGAACTGGCGCGCTGGGGAATCGAGACCTCGATCATTGTGCC CGGTGCCTTCACGAAGGGTACCAGCCACTTCGCCCATGCTGGTGCCCCCGCTGATACGGCGAGGGCAAAAGACTATGCCA ACGGGCCGACGGCGGATATTCCCGATGTCGCCATGAAGGGGTTGAGCGCGCTCGAACCGGCTGATGCCGACGCGGGTGAG GTGGCTAAGGCGATCACGCGGGTCGTGGACTTGCCGTTTGGCAGGAGGCCGTTTCGGGTCCACATCGATCCCTCGCAGGA TGGTGCGGAGATCGTCAACGGCGTGGCGGACCGCGTCCGGGCCGAGTTGCTGCGGCGGATCGGCCTGGAGGACATCCTGC ATCCGCGTGCATGA
Upstream 100 bases:
>100_bases CCGCCGTCGCGTCGCTGCTGACCGAGGACAATCGCTGGATCAACGCCCAGCGGATCGAAGTCTCCGGCGGCATGTTCGTG TGATCGAGAGGGGGACCGAC
Downstream 100 bases:
>100_bases AAATAGCAGCGACAGGACGGCCCATTTTCCGAGTCCGTCCTGTCATTCCCGACCCTCTTATAAATCCTTGTAATCGCTCA GCCAGCCCTGGACATTGATC
Product: short-chain dehydrogenase/reductase SDR
Products: 2,3-Dihydroxybenzoate; H+; Nicotinamide adenine dinucleotide - reduced [C]
Alternate protein names: ORFA [H]
Number of amino acids: Translated: 297; Mature: 296
Protein sequence:
>297_residues MGQVIVITGASSGFGALTARALADAGHIVYAGMRDTAGRNAPQVEAAKAYAKERAVDLHTVEMDVQSEASVEAAIATILR ENSRLDTLVHNAGHMVFGPAEAFTPEQYAQLYDVNVLGTQRVNRAALPILRRQGKGLLVWVSSTSTRGGTPPWLAPYFAA KAAMDSLAVSYAGELARWGIETSIIVPGAFTKGTSHFAHAGAPADTARAKDYANGPTADIPDVAMKGLSALEPADADAGE VAKAITRVVDLPFGRRPFRVHIDPSQDGAEIVNGVADRVRAELLRRIGLEDILHPRA
Sequences:
>Translated_297_residues MGQVIVITGASSGFGALTARALADAGHIVYAGMRDTAGRNAPQVEAAKAYAKERAVDLHTVEMDVQSEASVEAAIATILR ENSRLDTLVHNAGHMVFGPAEAFTPEQYAQLYDVNVLGTQRVNRAALPILRRQGKGLLVWVSSTSTRGGTPPWLAPYFAA KAAMDSLAVSYAGELARWGIETSIIVPGAFTKGTSHFAHAGAPADTARAKDYANGPTADIPDVAMKGLSALEPADADAGE VAKAITRVVDLPFGRRPFRVHIDPSQDGAEIVNGVADRVRAELLRRIGLEDILHPRA >Mature_296_residues GQVIVITGASSGFGALTARALADAGHIVYAGMRDTAGRNAPQVEAAKAYAKERAVDLHTVEMDVQSEASVEAAIATILRE NSRLDTLVHNAGHMVFGPAEAFTPEQYAQLYDVNVLGTQRVNRAALPILRRQGKGLLVWVSSTSTRGGTPPWLAPYFAAK AAMDSLAVSYAGELARWGIETSIIVPGAFTKGTSHFAHAGAPADTARAKDYANGPTADIPDVAMKGLSALEPADADAGEV AKAITRVVDLPFGRRPFRVHIDPSQDGAEIVNGVADRVRAELLRRIGLEDILHPRA
Specific function: Siderophore biosynthesis; enterobactin biosynthesis. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI223718074, Length=190, Percent_Identity=37.8947368421053, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI44680136, Length=202, Percent_Identity=30.1980198019802, Blast_Score=81, Evalue=9e-16, Organism=Homo sapiens, GI44680133, Length=202, Percent_Identity=30.1980198019802, Blast_Score=81, Evalue=9e-16, Organism=Homo sapiens, GI17738292, Length=202, Percent_Identity=30.1980198019802, Blast_Score=81, Evalue=9e-16, Organism=Homo sapiens, GI4504503, Length=192, Percent_Identity=30.7291666666667, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI7657478, Length=187, Percent_Identity=30.4812834224599, Blast_Score=75, Evalue=8e-14, Organism=Homo sapiens, GI119392083, Length=190, Percent_Identity=31.0526315789474, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI150247226, Length=197, Percent_Identity=33.502538071066, Blast_Score=70, Evalue=2e-12, Organism=Escherichia coli, GI1786812, Length=189, Percent_Identity=31.7460317460317, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1787820, Length=216, Percent_Identity=27.3148148148148, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI87082100, Length=188, Percent_Identity=30.3191489361702, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1786701, Length=189, Percent_Identity=30.1587301587302, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1788459, Length=194, Percent_Identity=29.3814432989691, Blast_Score=61, Evalue=7e-11, Organism=Escherichia coli, GI2367175, Length=212, Percent_Identity=30.188679245283, Blast_Score=61, Evalue=9e-11, Organism=Escherichia coli, GI87082160, Length=191, Percent_Identity=25.6544502617801, Blast_Score=61, Evalue=1e-10, Organism=Caenorhabditis elegans, GI17557780, Length=197, Percent_Identity=33.502538071066, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI115534660, Length=193, Percent_Identity=35.2331606217617, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI71994604, Length=186, Percent_Identity=31.7204301075269, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71994600, Length=193, Percent_Identity=30.5699481865285, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17544670, Length=233, Percent_Identity=29.1845493562232, Blast_Score=68, Evalue=6e-12, Organism=Saccharomyces cerevisiae, GI6322861, Length=197, Percent_Identity=30.4568527918782, Blast_Score=70, Evalue=5e-13, Organism=Drosophila melanogaster, GI24651139, Length=193, Percent_Identity=31.6062176165803, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI21357041, Length=189, Percent_Identity=32.8042328042328, Blast_Score=81, Evalue=1e-15, Organism=Drosophila melanogaster, GI28571526, Length=190, Percent_Identity=34.7368421052632, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI24644339, Length=229, Percent_Identity=30.1310043668122, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI23397609, Length=188, Percent_Identity=31.9148936170213, Blast_Score=69, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.3.1.28 [C]
Molecular weight: Translated: 31411; Mature: 31280
Theoretical pI: Translated: 6.73; Mature: 6.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGQVIVITGASSGFGALTARALADAGHIVYAGMRDTAGRNAPQVEAAKAYAKERAVDLHT CCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEE VEMDVQSEASVEAAIATILRENSRLDTLVHNAGHMVFGPAEAFTPEQYAQLYDVNVLGTQ EEECCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCEEECCHHHCCHHHHHHHHCCEEECCH RVNRAALPILRRQGKGLLVWVSSTSTRGGTPPWLAPYFAAKAAMDSLAVSYAGELARWGI HHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC ETSIIVPGAFTKGTSHFAHAGAPADTARAKDYANGPTADIPDVAMKGLSALEPADADAGE CEEEEECCCCCCCCCHHHCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCHHH VAKAITRVVDLPFGRRPFRVHIDPSQDGAEIVNGVADRVRAELLRRIGLEDILHPRA HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCHHHHCCCCC >Mature Secondary Structure GQVIVITGASSGFGALTARALADAGHIVYAGMRDTAGRNAPQVEAAKAYAKERAVDLHT CCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEE VEMDVQSEASVEAAIATILRENSRLDTLVHNAGHMVFGPAEAFTPEQYAQLYDVNVLGTQ EEECCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCEEECCHHHCCHHHHHHHHCCEEECCH RVNRAALPILRRQGKGLLVWVSSTSTRGGTPPWLAPYFAAKAAMDSLAVSYAGELARWGI HHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC ETSIIVPGAFTKGTSHFAHAGAPADTARAKDYANGPTADIPDVAMKGLSALEPADADAGE CEEEEECCCCCCCCCHHHCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCHHH VAKAITRVVDLPFGRRPFRVHIDPSQDGAEIVNGVADRVRAELLRRIGLEDILHPRA HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NAD+ [C]
Metal ions: NA
Kcat value (1/min): 5550 [C]
Specific activity: 66
Km value (mM): 0.26 {methyl-2,3-dehydro-3-hydroxybenzoate}} 0.2 {3-oxocyclohexane-1-carboxylic} 0.3 {2,3-dihydro-2,3-dihydroxybenzoate}} [C]
Substrates: 2,3-Dihydro-2,3-dihydroxybenzoate; Nicotinamide adenine dinucleotide [C]
Specific reaction: 2,3-Dihydro-2,3-dihydroxybenzoate + Nicotinamide adenine dinucleotide <==> 2,3-Dihydroxybenzoate + H+ + Nicotinamide adenine dinucleotide - reduced [C]
General reaction: Redox reaction [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9353931; 9384377; 8396117 [H]