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The map label for this gene is rfbD [H]

Identifier: 182682567

GI number: 182682567

Start: 2307518

End: 2308321

Strand: Direct

Name: rfbD [H]

Synonym: XfasM23_2055

Alternate gene names: 182682567

Gene position: 2307518-2308321 (Clockwise)

Preceding gene: 182682566

Following gene: 182682568

Centisome position: 91.0

GC content: 48.01

Gene sequence:

>804_bases
ATGATGAAAGATTTTCCTGCCATGATCGCACTCTCAGATATTGCTGCTGCTGTCAGGAAATATCGCCTGGTGGGCATGCT
CGGTTGGCAAGACGTGCGTCAGCGCTACCAGCGCTCCGTGCTCGGGCCGTTTTGGCTGACCATCAGTATGGCCGTGATGA
TTGCAACGATGGGACTCGTTTTCGGCCAGATACTCAATTTACCATTCAGCGATTTTCTACCGTTTCTCACCGCGGGCATC
ATTATCTGGGGCTTTATATCAACAACCATTAATGAAGGCTGCGGCGCATTCACCTCTGCAGAAGCAATCATCAAGCAGCT
GCCAATCCCACTGTTCGTACACGTCATGCGTACCATCTGGCGCAATATCATTATTGTGCTGCACAACATCGTTATTCTGC
CTGTGGTCTTTATCGTCGTTGGGAAGCACATTAGCTTCACTGCCCTGTTGAGCATCCTCGGCTTTTTAGTGCTGGTGTTA
AATCTTGGATGGATTGGCTTAATCCTGAGCGTGATTTGCACACGGTATCGCGATTTGTCGCAAATCGTATCCAACTCAAC
CCAAGTCGCGTTCTATTTGACACCGATCATATGGATGCCAACGCACCTGCCCGCAGCAACAGCGAACTATTTGCTTAAGT
GGAATCCGATTTATCACATTGTTGAAATTGTACGTGCACCGCTTTTAGGCAATGTGCCCAATGCTTTGAACTGGCAGATA
TCTATTTCACTTGCAGTCTTTGGATGGATATTGGCAACCTTTTTTTACAACCGTTACAAGCGCCGCATCGCCTATTGGCT
CTAA

Upstream 100 bases:

>100_bases
TGCACATTCCCTCGGTGAGATCATCCAAGCGGAGACGTTCATTGGGTACATCGGATGCGCCTATCTGCTGTTTAATCAAT
AAGACGTGAAAGTGAATTGA

Downstream 100 bases:

>100_bases
CAAAACATGGCTCTTATCAAATTTGAGAACGTCTGCGTCGATTTTCCAATCTATAACGCAAGCAGTAGATCACTAAAAAA
ACAACTCATCCAGGCCGTCA

Product: ABC-2 type transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MMKDFPAMIALSDIAAAVRKYRLVGMLGWQDVRQRYQRSVLGPFWLTISMAVMIATMGLVFGQILNLPFSDFLPFLTAGI
IIWGFISTTINEGCGAFTSAEAIIKQLPIPLFVHVMRTIWRNIIIVLHNIVILPVVFIVVGKHISFTALLSILGFLVLVL
NLGWIGLILSVICTRYRDLSQIVSNSTQVAFYLTPIIWMPTHLPAATANYLLKWNPIYHIVEIVRAPLLGNVPNALNWQI
SISLAVFGWILATFFYNRYKRRIAYWL

Sequences:

>Translated_267_residues
MMKDFPAMIALSDIAAAVRKYRLVGMLGWQDVRQRYQRSVLGPFWLTISMAVMIATMGLVFGQILNLPFSDFLPFLTAGI
IIWGFISTTINEGCGAFTSAEAIIKQLPIPLFVHVMRTIWRNIIIVLHNIVILPVVFIVVGKHISFTALLSILGFLVLVL
NLGWIGLILSVICTRYRDLSQIVSNSTQVAFYLTPIIWMPTHLPAATANYLLKWNPIYHIVEIVRAPLLGNVPNALNWQI
SISLAVFGWILATFFYNRYKRRIAYWL
>Mature_267_residues
MMKDFPAMIALSDIAAAVRKYRLVGMLGWQDVRQRYQRSVLGPFWLTISMAVMIATMGLVFGQILNLPFSDFLPFLTAGI
IIWGFISTTINEGCGAFTSAEAIIKQLPIPLFVHVMRTIWRNIIIVLHNIVILPVVFIVVGKHISFTALLSILGFLVLVL
NLGWIGLILSVICTRYRDLSQIVSNSTQVAFYLTPIIWMPTHLPAATANYLLKWNPIYHIVEIVRAPLLGNVPNALNWQI
SISLAVFGWILATFFYNRYKRRIAYWL

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbE [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 30267; Mature: 30267

Theoretical pI: Translated: 10.43; Mature: 10.43

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKDFPAMIALSDIAAAVRKYRLVGMLGWQDVRQRYQRSVLGPFWLTISMAVMIATMGLV
CCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
FGQILNLPFSDFLPFLTAGIIIWGFISTTINEGCGAFTSAEAIIKQLPIPLFVHVMRTIW
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHH
RNIIIVLHNIVILPVVFIVVGKHISFTALLSILGFLVLVLNLGWIGLILSVICTRYRDLS
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QIVSNSTQVAFYLTPIIWMPTHLPAATANYLLKWNPIYHIVEIVRAPLLGNVPNALNWQI
HHHCCCCEEEEEEHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEEE
SISLAVFGWILATFFYNRYKRRIAYWL
EHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMKDFPAMIALSDIAAAVRKYRLVGMLGWQDVRQRYQRSVLGPFWLTISMAVMIATMGLV
CCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
FGQILNLPFSDFLPFLTAGIIIWGFISTTINEGCGAFTSAEAIIKQLPIPLFVHVMRTIW
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHH
RNIIIVLHNIVILPVVFIVVGKHISFTALLSILGFLVLVLNLGWIGLILSVICTRYRDLS
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QIVSNSTQVAFYLTPIIWMPTHLPAATANYLLKWNPIYHIVEIVRAPLLGNVPNALNWQI
HHHCCCCEEEEEEHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEEE
SISLAVFGWILATFFYNRYKRRIAYWL
EHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7692217 [H]