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The map label for this gene is rfbE [H]

Identifier: 182682568

GI number: 182682568

Start: 2308328

End: 2309068

Strand: Direct

Name: rfbE [H]

Synonym: XfasM23_2056

Alternate gene names: 182682568

Gene position: 2308328-2309068 (Clockwise)

Preceding gene: 182682567

Following gene: 182682569

Centisome position: 91.03

GC content: 48.45

Gene sequence:

>741_bases
ATGGCTCTTATCAAATTTGAGAACGTCTGCGTCGATTTTCCAATCTATAACGCAAGCAGTAGATCACTAAAAAAACAACT
CATCCAGGCCGTCACCGGCGGTCAGTTGCGCAAGGAAGAAAGTGGTCGTGTTGTCGTCAGTGTATTAAAAGAGTTGACAT
TCACGTTGCAAGACGGCGCGCGCGTTGGTCTGCTCGGTCACAATGGTGCGGGAAAGAGCACCTTGCTGCGCCTATTGAAT
AACGTCTATTTCCCTTCCTCAGGCCAAGCGCTGATCGAAGGAACCACCGGGTCGTTGATCGACATTTCACTAGGAACGGA
CCCAGAAGCCACAGGACGGGAAAACATCTATCTACGTGGCGCACTGCTTGGGATGACCAAGAGCGAAATAAACCGCTCTG
TGAATGAAATCATCGAATTCTCCGAACTCGGCAATTTCATCGACATGCCACTACGCACGTATTCGACAGGCATGCATCTA
CGCTTAGCCTTTTCAGTATCCACCATCGTATGTCCAGAGATCCTGTTGATGGACGAGTGGTTATCTGTTGGCGACGAAGG
CTTCAAGCAAAAAGCGGAAAAACGCCTTTCAGAACTTGTACAAGCAACCAATATTCTCGTTGTCGCCAGTCACTCCAAAC
AACTGATTCTAAATACATGTAATCGTGTGATTTGGTTGGAACATGGCCAGATACGGATGGATGGCGACGCACAGGAGGTA
TGTACTGCGTACTTTGGGTGA

Upstream 100 bases:

>100_bases
CTGGCAGATATCTATTTCACTTGCAGTCTTTGGATGGATATTGGCAACCTTTTTTTACAACCGTTACAAGCGCCGCATCG
CCTATTGGCTCTAACAAAAC

Downstream 100 bases:

>100_bases
GGAGTGTGATATGTCACTCACGTGTTGCGTGTTCCCATCAATGGTAGATCCCATGTGCAGCACACGTCAGCACTGTGTTG
AACACGACTACCACCTTCCG

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MALIKFENVCVDFPIYNASSRSLKKQLIQAVTGGQLRKEESGRVVVSVLKELTFTLQDGARVGLLGHNGAGKSTLLRLLN
NVYFPSSGQALIEGTTGSLIDISLGTDPEATGRENIYLRGALLGMTKSEINRSVNEIIEFSELGNFIDMPLRTYSTGMHL
RLAFSVSTIVCPEILLMDEWLSVGDEGFKQKAEKRLSELVQATNILVVASHSKQLILNTCNRVIWLEHGQIRMDGDAQEV
CTAYFG

Sequences:

>Translated_246_residues
MALIKFENVCVDFPIYNASSRSLKKQLIQAVTGGQLRKEESGRVVVSVLKELTFTLQDGARVGLLGHNGAGKSTLLRLLN
NVYFPSSGQALIEGTTGSLIDISLGTDPEATGRENIYLRGALLGMTKSEINRSVNEIIEFSELGNFIDMPLRTYSTGMHL
RLAFSVSTIVCPEILLMDEWLSVGDEGFKQKAEKRLSELVQATNILVVASHSKQLILNTCNRVIWLEHGQIRMDGDAQEV
CTAYFG
>Mature_245_residues
ALIKFENVCVDFPIYNASSRSLKKQLIQAVTGGQLRKEESGRVVVSVLKELTFTLQDGARVGLLGHNGAGKSTLLRLLNN
VYFPSSGQALIEGTTGSLIDISLGTDPEATGRENIYLRGALLGMTKSEINRSVNEIIEFSELGNFIDMPLRTYSTGMHLR
LAFSVSTIVCPEILLMDEWLSVGDEGFKQKAEKRLSELVQATNILVVASHSKQLILNTCNRVIWLEHGQIRMDGDAQEVC
TAYFG

Specific function: May form an ATP-driven O-antigen export apparatus, in association with RfbD [H]

COG id: COG1134

COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27477115, Length=229, Percent_Identity=24.4541484716157, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI27881501, Length=194, Percent_Identity=30.4123711340206, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI30795238, Length=198, Percent_Identity=29.7979797979798, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI153792144, Length=214, Percent_Identity=25.7009345794392, Blast_Score=77, Evalue=9e-15,
Organism=Homo sapiens, GI6005701, Length=234, Percent_Identity=24.3589743589744, Blast_Score=77, Evalue=9e-15,
Organism=Homo sapiens, GI31657092, Length=207, Percent_Identity=28.0193236714976, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI105990541, Length=233, Percent_Identity=27.0386266094421, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI27436953, Length=222, Percent_Identity=23.8738738738739, Blast_Score=71, Evalue=7e-13,
Organism=Homo sapiens, GI27262624, Length=212, Percent_Identity=25.4716981132075, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI27262626, Length=212, Percent_Identity=25.4716981132075, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI47078218, Length=210, Percent_Identity=27.1428571428571, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI45446740, Length=210, Percent_Identity=27.1428571428571, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI150417984, Length=234, Percent_Identity=24.7863247863248, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI9665248, Length=222, Percent_Identity=27.4774774774775, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI116734710, Length=176, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=4e-11,
Organism=Escherichia coli, GI87081709, Length=205, Percent_Identity=26.3414634146341, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI87081791, Length=203, Percent_Identity=24.1379310344828, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1787370, Length=205, Percent_Identity=24.8780487804878, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790467, Length=211, Percent_Identity=25.5924170616114, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787089, Length=208, Percent_Identity=26.4423076923077, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI48994943, Length=204, Percent_Identity=25, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI87081782, Length=207, Percent_Identity=26.0869565217391, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1789032, Length=216, Percent_Identity=23.6111111111111, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787029, Length=208, Percent_Identity=25, Blast_Score=60, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=210, Percent_Identity=25.7142857142857, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17565586, Length=209, Percent_Identity=26.3157894736842, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71983523, Length=210, Percent_Identity=26.6666666666667, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI71983516, Length=210, Percent_Identity=26.6666666666667, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI71983510, Length=210, Percent_Identity=26.6666666666667, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI221500365, Length=198, Percent_Identity=30.3030303030303, Blast_Score=84, Evalue=6e-17,
Organism=Drosophila melanogaster, GI116007184, Length=198, Percent_Identity=30.3030303030303, Blast_Score=84, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: 3.6.3.30 [C]

Molecular weight: Translated: 27054; Mature: 26922

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALIKFENVCVDFPIYNASSRSLKKQLIQAVTGGQLRKEESGRVVVSVLKELTFTLQDGA
CEEEEECCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
RVGLLGHNGAGKSTLLRLLNNVYFPSSGQALIEGTTGSLIDISLGTDPEATGRENIYLRG
EEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCEEEEE
ALLGMTKSEINRSVNEIIEFSELGNFIDMPLRTYSTGMHLRLAFSVSTIVCPEILLMDEW
EEECCCHHHHHHHHHHHHHHHHHCCHHHCCHHHHCCCEEEEEEEEHHHHHHHHHHHHHHH
LSVGDEGFKQKAEKRLSELVQATNILVVASHSKQLILNTCNRVIWLEHGQIRMDGDAQEV
HHCCCHHHHHHHHHHHHHHHHHHCEEEEECCCCHHHHHHCCEEEEEECCEEEECCCHHHH
CTAYFG
HHHHCC
>Mature Secondary Structure 
ALIKFENVCVDFPIYNASSRSLKKQLIQAVTGGQLRKEESGRVVVSVLKELTFTLQDGA
EEEEECCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
RVGLLGHNGAGKSTLLRLLNNVYFPSSGQALIEGTTGSLIDISLGTDPEATGRENIYLRG
EEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCEEEEE
ALLGMTKSEINRSVNEIIEFSELGNFIDMPLRTYSTGMHLRLAFSVSTIVCPEILLMDEW
EEECCCHHHHHHHHHHHHHHHHHCCHHHCCHHHHCCCEEEEEEEEHHHHHHHHHHHHHHH
LSVGDEGFKQKAEKRLSELVQATNILVVASHSKQLILNTCNRVIWLEHGQIRMDGDAQEV
HHCCCHHHHHHHHHHHHHHHHHHCEEEEECCCCHHHHHHCCEEEEEECCEEEECCCHHHH
CTAYFG
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7692217 [H]