Click here to switch to the map view.

The map label for this gene is rbn [C]

Identifier: 182682256

GI number: 182682256

Start: 1920212

End: 1921090

Strand: Direct

Name: rbn [C]

Synonym: XfasM23_1738

Alternate gene names: 182682256

Gene position: 1920212-1921090 (Clockwise)

Preceding gene: 182682255

Following gene: 182682257

Centisome position: 75.73

GC content: 52.67

Gene sequence:

>879_bases
ATGGCGGAGAACCTCCTTTCACCCAAACAACTGAACAAACACCTAGAACGCTTGCAACAAAGCCTACCGATGGCGCTGGT
CAACCGTTTCAACGAGATCGACCTACTGACTCAAGCCGCCTCACTGTCCTTCTACGCACTGCTATCACTGGCACCACTAC
TGGTACTGCTCCTCTGGCTAACTGCCTCACTCTATCCTGCGGCACAAGCAACGCTGATCACACAGATTGAACAATTAGCG
GGTAACAGCGCAGCCACCGTCGCCAAAACGATTTTACAAAACGCCACCGCACAACCCACTTTCGGTACCCTGGCAGGACT
GTGGAGCACACTGTTATTGTTCATAGGTGCTACGGCAGTGTTCGCACAACTGCAAAACGCGCTGAACCTCATCTTTCACA
CCGATCAACGGCGCCTGGAAGGAATAAAAGCATGGCTGAAAAAGCGTGTGTTTTCTTTCGGTGTCGTGTTAGCACTGGGC
TTCCTGCTGATCATCTCCATGGTCGCCACAACCGCACTGCAAGTCGTGTTTACACACCTGCCTTCCATGCTGCCGACGAT
AGGCTACCTAAGTACACTGGTGCTGTACACGCTAGCCTTTGCGTTTTTATACCGCTATTTACCAGACCGAACAGTCAACT
GGCGCCAAGCCTACATCGGCGGCGCAATCACCGCTTGCTTATTCACACTGGGTCGCTATGCCATCGGGCTGTACATCAGC
ACCGCAGCACCAGGCAGCGCCTACGGCTCAATGGGTGCATTGGTCATTATGCTGGTATGGATGTACTACACATCCGTCGT
ATTCTTCATCGGCGCACTGCTGACTGCCGTCATCGACGAACGGTTACGTGATCACAAGATCCGAAACATCCAACACTGA

Upstream 100 bases:

>100_bases
CTGTTTTTGCCATCCAGACTGCTAGAAACACAACGCCAACGGATGACGCACACAGACAACTCCATTGCGTAAACCGCACT
AGCAACACGGCATACAACTT

Downstream 100 bases:

>100_bases
ACACCACCGAACACCTGACCAGCATTACGGTGTATGACACTGCGCGATGTCATTCTGCTACGTTGCGTGCTCACCATGTC
TAACGCAACCATCCCTATCA

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MAENLLSPKQLNKHLERLQQSLPMALVNRFNEIDLLTQAASLSFYALLSLAPLLVLLLWLTASLYPAAQATLITQIEQLA
GNSAATVAKTILQNATAQPTFGTLAGLWSTLLLFIGATAVFAQLQNALNLIFHTDQRRLEGIKAWLKKRVFSFGVVLALG
FLLIISMVATTALQVVFTHLPSMLPTIGYLSTLVLYTLAFAFLYRYLPDRTVNWRQAYIGGAITACLFTLGRYAIGLYIS
TAAPGSAYGSMGALVIMLVWMYYTSVVFFIGALLTAVIDERLRDHKIRNIQH

Sequences:

>Translated_292_residues
MAENLLSPKQLNKHLERLQQSLPMALVNRFNEIDLLTQAASLSFYALLSLAPLLVLLLWLTASLYPAAQATLITQIEQLA
GNSAATVAKTILQNATAQPTFGTLAGLWSTLLLFIGATAVFAQLQNALNLIFHTDQRRLEGIKAWLKKRVFSFGVVLALG
FLLIISMVATTALQVVFTHLPSMLPTIGYLSTLVLYTLAFAFLYRYLPDRTVNWRQAYIGGAITACLFTLGRYAIGLYIS
TAAPGSAYGSMGALVIMLVWMYYTSVVFFIGALLTAVIDERLRDHKIRNIQH
>Mature_291_residues
AENLLSPKQLNKHLERLQQSLPMALVNRFNEIDLLTQAASLSFYALLSLAPLLVLLLWLTASLYPAAQATLITQIEQLAG
NSAATVAKTILQNATAQPTFGTLAGLWSTLLLFIGATAVFAQLQNALNLIFHTDQRRLEGIKAWLKKRVFSFGVVLALGF
LLIISMVATTALQVVFTHLPSMLPTIGYLSTLVLYTLAFAFLYRYLPDRTVNWRQAYIGGAITACLFTLGRYAIGLYIST
AAPGSAYGSMGALVIMLVWMYYTSVVFFIGALLTAVIDERLRDHKIRNIQH

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

Organism=Escherichia coli, GI1790319, Length=294, Percent_Identity=24.4897959183673, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 32190; Mature: 32058

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAENLLSPKQLNKHLERLQQSLPMALVNRFNEIDLLTQAASLSFYALLSLAPLLVLLLWL
CCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TASLYPAAQATLITQIEQLAGNSAATVAKTILQNATAQPTFGTLAGLWSTLLLFIGATAV
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
FAQLQNALNLIFHTDQRRLEGIKAWLKKRVFSFGVVLALGFLLIISMVATTALQVVFTHL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PSMLPTIGYLSTLVLYTLAFAFLYRYLPDRTVNWRQAYIGGAITACLFTLGRYAIGLYIS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
TAAPGSAYGSMGALVIMLVWMYYTSVVFFIGALLTAVIDERLRDHKIRNIQH
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AENLLSPKQLNKHLERLQQSLPMALVNRFNEIDLLTQAASLSFYALLSLAPLLVLLLWL
CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TASLYPAAQATLITQIEQLAGNSAATVAKTILQNATAQPTFGTLAGLWSTLLLFIGATAV
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
FAQLQNALNLIFHTDQRRLEGIKAWLKKRVFSFGVVLALGFLLIISMVATTALQVVFTHL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PSMLPTIGYLSTLVLYTLAFAFLYRYLPDRTVNWRQAYIGGAITACLFTLGRYAIGLYIS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
TAAPGSAYGSMGALVIMLVWMYYTSVVFFIGALLTAVIDERLRDHKIRNIQH
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA