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The map label for this gene is sufD [H]

Identifier: 182681282

GI number: 182681282

Start: 856226

End: 857494

Strand: Reverse

Name: sufD [H]

Synonym: XfasM23_0727

Alternate gene names: 182681282

Gene position: 857494-856226 (Counterclockwise)

Preceding gene: 182681283

Following gene: 182681281

Centisome position: 33.82

GC content: 58.47

Gene sequence:

>1269_bases
ATGAACCCCCTCCTTGACTCCCTGGCCGCCGCCTTCCAAAACGACGGTGACATCACCCGCCGCCAAGCACTGGAGGACGC
ACGTCGCGACGGCTTACCCGACCTACGCAGCGAAACGTGGAAATACACATCACTACGTACACTGGAACGCCGCCACTTCA
CCCAAGCACCTACTGCCGCAACAGCGATTGATCCTACATGGCTGAACACCATCCCGACACCGCGCCTGGTCTTCGTCAAC
GGTCGCCATAATCCCAACCTGTCCAACCTCTCTGGCTTGCCACAAGGCATGACCTTACACCCCCTGTCAGCCCCCCCGAG
AGAACAAGACAAAGGACTGCACCGCAGCCCCCCCCATTTCAAACACAGAGATGAGACATTTGCCCGACTCAACACCGCAC
TCGCCGACGAAGGAGTACTGCTACGTGTCCATCAAAACATCACCGTCAACACACCCATCCACCTCATCTTTATTACTCCA
GCAGGTGAAATAGACCACGCCTGGCACCTACTCAACCAGATCGAACTGCACCGCGGCGCATCACTGCAACTCATCGAACA
CCAACTCCATACCGGCCACGCCGCCCACCTCAACAACGTCCTCACCCGCATTCATATCGCACCGGGCGCATGCCTGGAAC
ATGCCCGCCTGCAAAACGATGCTACCGCCACGACCTCATTCCTGCGCACCGACGCAGTGCTCGCACAGGACGCTGAATAC
CGCCGTGTCGATGTAGAACTCGGCGCAAAACTGTCACGCCATGAACTCAACGTACGTCTTGAAGGCGACAACGCCCGCCT
GACCGCCAACGGTATCCTGTTAGGCCACCTCACACGCCATCTAGACACCCGCCTGCACATCGAACATATCGCCCGCAATA
CGGCAAGCGAACTGCTATGGCGCGGCATCGGAACCGACCGCAGCCGCGTCGTATTTCATGGCGGCATTCACATCCATCAA
GGCGCCGACGGCAGCGACGCCCGACTATCGAACAAAAACCTACTGCTCTCAGCAAACGCAGAGATCGACACACAACCTGT
GCTGATCATCAACGCAGACGAAGTTCAGGCTGCACACGGTGCCACCGTCGGCCAACTCGACCCACAAGCCCTGTTCTACC
TACGCACCCGCGGCATCCCACACACCACCGCACAACAGCTCCTCAGCGCAGCGTTCTGCCACGAACCACTAACCCTGTTA
GACAGCACCCTAGCCGACATCCTGCGCGCACCACTGAATCACGCACTGAACAGCACATGGACCGTATAA

Upstream 100 bases:

>100_bases
ATCGTGTCATCCCCACCAGCGAAACAATGCCTCCCTCCCCCCATGATCCACACACCGACACACCCAGACTGAAGGCACCA
ACACCGCGGGAAAATGTCTG

Downstream 100 bases:

>100_bases
ACACCTCCGCAGCCCCCCCCACATCCCCCGATTGGGAACGCCTGCGTGCCGACTTCCCCCTACTGCAACGCCACGTACAC
GGAAAACCGCTGATCTATTT

Product: FeS assembly protein SufD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MNPLLDSLAAAFQNDGDITRRQALEDARRDGLPDLRSETWKYTSLRTLERRHFTQAPTAATAIDPTWLNTIPTPRLVFVN
GRHNPNLSNLSGLPQGMTLHPLSAPPREQDKGLHRSPPHFKHRDETFARLNTALADEGVLLRVHQNITVNTPIHLIFITP
AGEIDHAWHLLNQIELHRGASLQLIEHQLHTGHAAHLNNVLTRIHIAPGACLEHARLQNDATATTSFLRTDAVLAQDAEY
RRVDVELGAKLSRHELNVRLEGDNARLTANGILLGHLTRHLDTRLHIEHIARNTASELLWRGIGTDRSRVVFHGGIHIHQ
GADGSDARLSNKNLLLSANAEIDTQPVLIINADEVQAAHGATVGQLDPQALFYLRTRGIPHTTAQQLLSAAFCHEPLTLL
DSTLADILRAPLNHALNSTWTV

Sequences:

>Translated_422_residues
MNPLLDSLAAAFQNDGDITRRQALEDARRDGLPDLRSETWKYTSLRTLERRHFTQAPTAATAIDPTWLNTIPTPRLVFVN
GRHNPNLSNLSGLPQGMTLHPLSAPPREQDKGLHRSPPHFKHRDETFARLNTALADEGVLLRVHQNITVNTPIHLIFITP
AGEIDHAWHLLNQIELHRGASLQLIEHQLHTGHAAHLNNVLTRIHIAPGACLEHARLQNDATATTSFLRTDAVLAQDAEY
RRVDVELGAKLSRHELNVRLEGDNARLTANGILLGHLTRHLDTRLHIEHIARNTASELLWRGIGTDRSRVVFHGGIHIHQ
GADGSDARLSNKNLLLSANAEIDTQPVLIINADEVQAAHGATVGQLDPQALFYLRTRGIPHTTAQQLLSAAFCHEPLTLL
DSTLADILRAPLNHALNSTWTV
>Mature_422_residues
MNPLLDSLAAAFQNDGDITRRQALEDARRDGLPDLRSETWKYTSLRTLERRHFTQAPTAATAIDPTWLNTIPTPRLVFVN
GRHNPNLSNLSGLPQGMTLHPLSAPPREQDKGLHRSPPHFKHRDETFARLNTALADEGVLLRVHQNITVNTPIHLIFITP
AGEIDHAWHLLNQIELHRGASLQLIEHQLHTGHAAHLNNVLTRIHIAPGACLEHARLQNDATATTSFLRTDAVLAQDAEY
RRVDVELGAKLSRHELNVRLEGDNARLTANGILLGHLTRHLDTRLHIEHIARNTASELLWRGIGTDRSRVVFHGGIHIHQ
GADGSDARLSNKNLLLSANAEIDTQPVLIINADEVQAAHGATVGQLDPQALFYLRTRGIPHTTAQQLLSAAFCHEPLTLL
DSTLADILRAPLNHALNSTWTV

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI1787971, Length=376, Percent_Identity=32.9787234042553, Blast_Score=166, Evalue=3e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 46773; Mature: 46773

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPLLDSLAAAFQNDGDITRRQALEDARRDGLPDLRSETWKYTSLRTLERRHFTQAPTAA
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHCCCCCCCC
TAIDPTWLNTIPTPRLVFVNGRHNPNLSNLSGLPQGMTLHPLSAPPREQDKGLHRSPPHF
CCCCCHHHCCCCCCEEEEEECCCCCCCHHCCCCCCCCEECCCCCCCCHHHCCCCCCCCCC
KHRDETFARLNTALADEGVLLRVHQNITVNTPIHLIFITPAGEIDHAWHLLNQIELHRGA
CCCHHHHHHHHHHHCCCCEEEEEECCEEECCCEEEEEECCCCCHHHHHHHHHHHHHCCCC
SLQLIEHQLHTGHAAHLNNVLTRIHIAPGACLEHARLQNDATATTSFLRTDAVLAQDAEY
CHHHHHHHHHCCCHHHHHHHHHEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC
RRVDVELGAKLSRHELNVRLEGDNARLTANGILLGHLTRHLDTRLHIEHIARNTASELLW
EEEEHHHCCCEECEEEEEEEECCCCEEEECCEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
RGIGTDRSRVVFHGGIHIHQGADGSDARLSNKNLLLSANAEIDTQPVLIINADEVQAAHG
HCCCCCCCEEEEECCEEEECCCCCCCCEECCCCEEEEECCCCCCCCEEEEECHHHHHHCC
ATVGQLDPQALFYLRTRGIPHTTAQQLLSAAFCHEPLTLLDSTLADILRAPLNHALNSTW
CCCCCCCHHHEEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
TV
CC
>Mature Secondary Structure
MNPLLDSLAAAFQNDGDITRRQALEDARRDGLPDLRSETWKYTSLRTLERRHFTQAPTAA
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHCCCCCCCC
TAIDPTWLNTIPTPRLVFVNGRHNPNLSNLSGLPQGMTLHPLSAPPREQDKGLHRSPPHF
CCCCCHHHCCCCCCEEEEEECCCCCCCHHCCCCCCCCEECCCCCCCCHHHCCCCCCCCCC
KHRDETFARLNTALADEGVLLRVHQNITVNTPIHLIFITPAGEIDHAWHLLNQIELHRGA
CCCHHHHHHHHHHHCCCCEEEEEECCEEECCCEEEEEECCCCCHHHHHHHHHHHHHCCCC
SLQLIEHQLHTGHAAHLNNVLTRIHIAPGACLEHARLQNDATATTSFLRTDAVLAQDAEY
CHHHHHHHHHCCCHHHHHHHHHEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC
RRVDVELGAKLSRHELNVRLEGDNARLTANGILLGHLTRHLDTRLHIEHIARNTASELLW
EEEEHHHCCCEECEEEEEEEECCCCEEEECCEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
RGIGTDRSRVVFHGGIHIHQGADGSDARLSNKNLLLSANAEIDTQPVLIINADEVQAAHG
HCCCCCCCEEEEECCEEEECCCCCCCCEECCCCEEEEECCCCCCCCEEEEECHHHHHHCC
ATVGQLDPQALFYLRTRGIPHTTAQQLLSAAFCHEPLTLLDSTLADILRAPLNHALNSTW
CCCCCCCHHHEEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
TV
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 10322040 [H]