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The map label for this gene is rbsR [H]

Identifier: 182681272

GI number: 182681272

Start: 845757

End: 846833

Strand: Direct

Name: rbsR [H]

Synonym: XfasM23_0717

Alternate gene names: 182681272

Gene position: 845757-846833 (Clockwise)

Preceding gene: 182681271

Following gene: 182681273

Centisome position: 33.35

GC content: 54.5

Gene sequence:

>1077_bases
ATGCGCCGACCGACCATCAAAGATATTGCAGAAAGAGCCGATGTCTCGTTGAAAACCGTTTCGAGGGTCATCAATAACGA
GTCCTCGGTGATGCCGGCCACGCGGGCGCGGGTGCTGCGTGCGATTGCCGATCTGAATTACGAACCGGACCTGTCCCCGT
CCGCACGCAATCTGCGTAGTGCTATGCCGTGTGTCATCGGATTGGTGTATGACAACCCCAACCCTTACCACATCATCAAT
ATTCAGAATGGTGTGCTCGCGGCGTGCCGTGAAACAGGGTTTAGCTTGCAGATCTACCCCTGCGATTCGACGTCGCCACT
GCTGGTTGAAGAATTGACTGAGTGGGTGCAGCGGTCGCGTCAGGCTGGCTTGGTACTGACTGCGCCGATGTCTGAGCGCC
CAGAGCTGATTGCCGGTCTGATTGCGCGTGGCATCAAATTCGTTCGTATCATTGCCGCTACTGAGGATCCATGCGATGGT
CCATGCGTCTATATCGCCGACCGTAAGGCGGCTTATGAGATTACCGAGCATCTGATCCAGCTTGGACACCAGCGGATTGG
TTTTCTTTGGGGGGGCGCTCAGCATCGTTCCAGTGGCGAACGTTACGCTGGTTACGAGGCGGCCTTGAAAGATTACGGTA
TCGATCTCGATAAGCGCTTAGTGGTGCCAGGTGATTACACGTTTGATGATGGTTTTCGCGGTGCGCGTCGTTTGCTGGCG
TTACGTGATCAGCCTACTGAGATCTTTGGCAGTAATGATGAGATTGCGGCCGGTGTGTTGGCTGCGGCTCGCTCAGTGGG
TATCAATGTGCCACATCATCTTTCTATTACTGGTTTTGAAAATAGTCCATTCGCATCTCATTCCTCACCGACGCTGACCA
CGGCCAGCCAGACGACGGACGAGATTGCACGCCATGCAGCACGCCTCCTGATTGGCCAGTTGCGCATGGATACGTGTGAT
GAGCAGAGCATGCTGTTACAAAATCGCGGCTTTGTGCCGCAGTTAGTGGTACGCGCTTCTACCGCGCCAGTGCGACAGAC
ACCCTTTATTAAAACTCCCTCTCACGATCTGTCATGA

Upstream 100 bases:

>100_bases
GTTGATGGTGCCTTGTTATCTGTACATTTTGTTTTATTCCTTGATTGCTGGAGCGATCAAGGGTCGCAGTGTGCAACGTT
TAGCCCTCGGGAAATGACAA

Downstream 100 bases:

>100_bases
CGTTACCGATCCCTTTGCTTGAACCAGAACAAACACTGATGTTTCGTGAGGCAGCACAGGCTGCCGCAGTGATTGCCACA
CAGTTCGAACGTAACGCAGC

Product: LacI family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MRRPTIKDIAERADVSLKTVSRVINNESSVMPATRARVLRAIADLNYEPDLSPSARNLRSAMPCVIGLVYDNPNPYHIIN
IQNGVLAACRETGFSLQIYPCDSTSPLLVEELTEWVQRSRQAGLVLTAPMSERPELIAGLIARGIKFVRIIAATEDPCDG
PCVYIADRKAAYEITEHLIQLGHQRIGFLWGGAQHRSSGERYAGYEAALKDYGIDLDKRLVVPGDYTFDDGFRGARRLLA
LRDQPTEIFGSNDEIAAGVLAAARSVGINVPHHLSITGFENSPFASHSSPTLTTASQTTDEIARHAARLLIGQLRMDTCD
EQSMLLQNRGFVPQLVVRASTAPVRQTPFIKTPSHDLS

Sequences:

>Translated_358_residues
MRRPTIKDIAERADVSLKTVSRVINNESSVMPATRARVLRAIADLNYEPDLSPSARNLRSAMPCVIGLVYDNPNPYHIIN
IQNGVLAACRETGFSLQIYPCDSTSPLLVEELTEWVQRSRQAGLVLTAPMSERPELIAGLIARGIKFVRIIAATEDPCDG
PCVYIADRKAAYEITEHLIQLGHQRIGFLWGGAQHRSSGERYAGYEAALKDYGIDLDKRLVVPGDYTFDDGFRGARRLLA
LRDQPTEIFGSNDEIAAGVLAAARSVGINVPHHLSITGFENSPFASHSSPTLTTASQTTDEIARHAARLLIGQLRMDTCD
EQSMLLQNRGFVPQLVVRASTAPVRQTPFIKTPSHDLS
>Mature_358_residues
MRRPTIKDIAERADVSLKTVSRVINNESSVMPATRARVLRAIADLNYEPDLSPSARNLRSAMPCVIGLVYDNPNPYHIIN
IQNGVLAACRETGFSLQIYPCDSTSPLLVEELTEWVQRSRQAGLVLTAPMSERPELIAGLIARGIKFVRIIAATEDPCDG
PCVYIADRKAAYEITEHLIQLGHQRIGFLWGGAQHRSSGERYAGYEAALKDYGIDLDKRLVVPGDYTFDDGFRGARRLLA
LRDQPTEIFGSNDEIAAGVLAAARSVGINVPHHLSITGFENSPFASHSSPTLTTASQTTDEIARHAARLLIGQLRMDTCD
EQSMLLQNRGFVPQLVVRASTAPVRQTPFIKTPSHDLS

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790194, Length=339, Percent_Identity=31.5634218289086, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1790369, Length=348, Percent_Identity=29.5977011494253, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1787948, Length=341, Percent_Identity=29.3255131964809, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1789202, Length=297, Percent_Identity=33.3333333333333, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1789068, Length=315, Percent_Identity=27.9365079365079, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1788474, Length=342, Percent_Identity=29.5321637426901, Blast_Score=105, Evalue=6e-24,
Organism=Escherichia coli, GI1787580, Length=329, Percent_Identity=26.4437689969605, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1786540, Length=298, Percent_Identity=25.503355704698, Blast_Score=92, Evalue=7e-20,
Organism=Escherichia coli, GI48994940, Length=318, Percent_Identity=23.2704402515723, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1789456, Length=326, Percent_Identity=26.3803680981595, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1790715, Length=329, Percent_Identity=23.4042553191489, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 39343; Mature: 39343

Theoretical pI: Translated: 7.00; Mature: 7.00

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRPTIKDIAERADVSLKTVSRVINNESSVMPATRARVLRAIADLNYEPDLSPSARNLRS
CCCCCHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
AMPCVIGLVYDNPNPYHIINIQNGVLAACRETGFSLQIYPCDSTSPLLVEELTEWVQRSR
HCCEEEEEEECCCCCEEEEEECCCHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHH
QAGLVLTAPMSERPELIAGLIARGIKFVRIIAATEDPCDGPCVYIADRKAAYEITEHLIQ
CCCEEEECCCCCCHHHHHHHHHHHHHEEEEEEECCCCCCCCEEEEECCHHHHHHHHHHHH
LGHQRIGFLWGGAQHRSSGERYAGYEAALKDYGIDLDKRLVVPGDYTFDDGFRGARRLLA
HCHHHHEEEECCCHHCCCCCHHCCHHHHHHHCCCCCCCEEECCCCCCCCCCHHHHHHHHH
LRDQPTEIFGSNDEIAAGVLAAARSVGINVPHHLSITGFENSPFASHSSPTLTTASQTTD
HCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEEECHHHHH
EIARHAARLLIGQLRMDTCDEQSMLLQNRGFVPQLVVRASTAPVRQTPFIKTPSHDLS
HHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHCCCCCCCCCCCCEECCCCCCC
>Mature Secondary Structure
MRRPTIKDIAERADVSLKTVSRVINNESSVMPATRARVLRAIADLNYEPDLSPSARNLRS
CCCCCHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
AMPCVIGLVYDNPNPYHIINIQNGVLAACRETGFSLQIYPCDSTSPLLVEELTEWVQRSR
HCCEEEEEEECCCCCEEEEEECCCHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHH
QAGLVLTAPMSERPELIAGLIARGIKFVRIIAATEDPCDGPCVYIADRKAAYEITEHLIQ
CCCEEEECCCCCCHHHHHHHHHHHHHEEEEEEECCCCCCCCEEEEECCHHHHHHHHHHHH
LGHQRIGFLWGGAQHRSSGERYAGYEAALKDYGIDLDKRLVVPGDYTFDDGFRGARRLLA
HCHHHHEEEECCCHHCCCCCHHCCHHHHHHHCCCCCCCEEECCCCCCCCCCHHHHHHHHH
LRDQPTEIFGSNDEIAAGVLAAARSVGINVPHHLSITGFENSPFASHSSPTLTTASQTTD
HCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEEECHHHHH
EIARHAARLLIGQLRMDTCDEQSMLLQNRGFVPQLVVRASTAPVRQTPFIKTPSHDLS
HHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHCCCCCCCCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]