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The map label for this gene is kdsD [H]

Identifier: 182681230

GI number: 182681230

Start: 798829

End: 799866

Strand: Reverse

Name: kdsD [H]

Synonym: XfasM23_0675

Alternate gene names: 182681230

Gene position: 799866-798829 (Counterclockwise)

Preceding gene: 182681234

Following gene: 182681229

Centisome position: 31.54

GC content: 55.01

Gene sequence:

>1038_bases
ATGGAGGTTCATTTTACTCCTGTACTGAACACATGTATGGCTGTCTCATTACTCCAGCACAATCACCTCAGCGATACAGC
GCTGATCGCAAGCGCAAGAAGGGTGATCGAGATTGAGCGTGAGGCGCTGACATTACTCAACGAACGGATAGGCGCACCAT
TTGTGGCAGCCTGTCGGCTGATTCTGAACTCGCACGGCCGCGTGATCAGCACTGGCATGGGCAAATCCGGACACATTGCA
CGCAAGATCGCTGCCACCTTGGCTTCAACGGGTACACCCGCATTTTTCGTACATCCCGGCGAAGCTGGGCATGGCGACCT
TGGAATGATCACGGACAGCGATGTGATCCTGGCGTTGTCCTACTCAGGTGAATCAGACGAAGTACGGATGCTGCTTCCAG
TCCTCAAGCGTCAAGGCAATCCAATCATTGCCATGACCGGCCGCCCCCAATCAACACTGGCACAGGCTGCCGATGTGCAT
CTGGATGTCAGTGTCACCACCGAAGCCTGCCCACTGGATCTAGCGCCAACCTCCAGCACAACCACTTCGCTAGTAATTGG
CGACGCACTCGCAGTCGCACTATTGGATGCACGCGGCTTTACTGCGGAAGATTTTGCCCGCTCACACCCCGCTGGCCACC
TAGGTCGACGCCTACTACTGCACATTACGGACGTGATGCACAGTGGTGATGACCTGCCAGCAGTACATGAGGAAGCCACA
CTGAGCGAGGCATTACTCGAGATGACTCGCAAACGTCTGGGCATGACTGCAATCGTTGACAACGAGGGCCGACTCCAGGG
AGTGTTCACTGACGGCGACTTGCGCCGTGCTCTGGACAGCAACATTGATGTAAGAAACGCGCGCATCAACGAAGTCATGA
CCCGCCATCCCAAAACAATCAATGCCGACCAACTCGCGGCCGAAGCTGCACGATTGATGGAAGCCAATAAAATCAATGGT
TTGATTGTGGTCGATCCGCAACAGCGTGCGGTAGGCGCCCTGAACATTCACGACCTGCTGCACGCCAAAATTGTTTAA

Upstream 100 bases:

>100_bases
ATCCTCACCACGCACATCAGCACGGGCCTGCGGTAAACCAGACTCAATAAGTTTACGAATAGTTTCAGCGTCCAATAGAC
ACGTCTCTAAATCTAATAAA

Downstream 100 bases:

>100_bases
TCCTCTGAAAAATACCAATGCCTTATTCCCCATTAAATACCCTGCCTGCCGATGTCATTCAACGTGCAAAATGCATCCGC
TTAGCATGCTTTGACGTGGA

Product: KpsF/GutQ family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MEVHFTPVLNTCMAVSLLQHNHLSDTALIASARRVIEIEREALTLLNERIGAPFVAACRLILNSHGRVISTGMGKSGHIA
RKIAATLASTGTPAFFVHPGEAGHGDLGMITDSDVILALSYSGESDEVRMLLPVLKRQGNPIIAMTGRPQSTLAQAADVH
LDVSVTTEACPLDLAPTSSTTTSLVIGDALAVALLDARGFTAEDFARSHPAGHLGRRLLLHITDVMHSGDDLPAVHEEAT
LSEALLEMTRKRLGMTAIVDNEGRLQGVFTDGDLRRALDSNIDVRNARINEVMTRHPKTINADQLAAEAARLMEANKING
LIVVDPQQRAVGALNIHDLLHAKIV

Sequences:

>Translated_345_residues
MEVHFTPVLNTCMAVSLLQHNHLSDTALIASARRVIEIEREALTLLNERIGAPFVAACRLILNSHGRVISTGMGKSGHIA
RKIAATLASTGTPAFFVHPGEAGHGDLGMITDSDVILALSYSGESDEVRMLLPVLKRQGNPIIAMTGRPQSTLAQAADVH
LDVSVTTEACPLDLAPTSSTTTSLVIGDALAVALLDARGFTAEDFARSHPAGHLGRRLLLHITDVMHSGDDLPAVHEEAT
LSEALLEMTRKRLGMTAIVDNEGRLQGVFTDGDLRRALDSNIDVRNARINEVMTRHPKTINADQLAAEAARLMEANKING
LIVVDPQQRAVGALNIHDLLHAKIV
>Mature_345_residues
MEVHFTPVLNTCMAVSLLQHNHLSDTALIASARRVIEIEREALTLLNERIGAPFVAACRLILNSHGRVISTGMGKSGHIA
RKIAATLASTGTPAFFVHPGEAGHGDLGMITDSDVILALSYSGESDEVRMLLPVLKRQGNPIIAMTGRPQSTLAQAADVH
LDVSVTTEACPLDLAPTSSTTTSLVIGDALAVALLDARGFTAEDFARSHPAGHLGRRLLLHITDVMHSGDDLPAVHEEAT
LSEALLEMTRKRLGMTAIVDNEGRLQGVFTDGDLRRALDSNIDVRNARINEVMTRHPKTINADQLAAEAARLMEANKING
LIVVDPQQRAVGALNIHDLLHAKIV

Specific function: Catalyzes the interconversion of D-arabinose 5-phosphate and D-ribulose 5-phosphate [H]

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=315, Percent_Identity=56.5079365079365, Blast_Score=355, Evalue=3e-99,
Organism=Escherichia coli, GI87082151, Length=319, Percent_Identity=47.6489028213166, Blast_Score=290, Evalue=1e-79,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: =5.3.1.13 [H]

Molecular weight: Translated: 36960; Mature: 36960

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVHFTPVLNTCMAVSLLQHNHLSDTALIASARRVIEIEREALTLLNERIGAPFVAACRL
CEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
ILNSHGRVISTGMGKSGHIARKIAATLASTGTPAFFVHPGEAGHGDLGMITDSDVILALS
HHHCCCCEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEECCCEEEEEE
YSGESDEVRMLLPVLKRQGNPIIAMTGRPQSTLAQAADVHLDVSVTTEACPLDLAPTSST
ECCCCCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHCEEEEEEEECCCCCCCCCCCCCC
TTSLVIGDALAVALLDARGFTAEDFARSHPAGHLGRRLLLHITDVMHSGDDLPAVHEEAT
CEEEEHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
LSEALLEMTRKRLGMTAIVDNEGRLQGVFTDGDLRRALDSNIDVRNARINEVMTRHPKTI
HHHHHHHHHHHHCCCEEEECCCCCEEEEEECHHHHHHHCCCCCCCHHHHHHHHHCCCCCC
NADQLAAEAARLMEANKINGLIVVDPQQRAVGALNIHDLLHAKIV
CHHHHHHHHHHHHHHHCCCCEEEECCCHHHCCCCHHHHHHHHHCC
>Mature Secondary Structure
MEVHFTPVLNTCMAVSLLQHNHLSDTALIASARRVIEIEREALTLLNERIGAPFVAACRL
CEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
ILNSHGRVISTGMGKSGHIARKIAATLASTGTPAFFVHPGEAGHGDLGMITDSDVILALS
HHHCCCCEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEECCCEEEEEE
YSGESDEVRMLLPVLKRQGNPIIAMTGRPQSTLAQAADVHLDVSVTTEACPLDLAPTSST
ECCCCCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHCEEEEEEEECCCCCCCCCCCCCC
TTSLVIGDALAVALLDARGFTAEDFARSHPAGHLGRRLLLHITDVMHSGDDLPAVHEEAT
CEEEEHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
LSEALLEMTRKRLGMTAIVDNEGRLQGVFTDGDLRRALDSNIDVRNARINEVMTRHPKTI
HHHHHHHHHHHHCCCEEEECCCCCEEEEEECHHHHHHHCCCCCCCHHHHHHHHHCCCCCC
NADQLAAEAARLMEANKINGLIVVDPQQRAVGALNIHDLLHAKIV
CHHHHHHHHHHHHHHHCCCCEEEECCCHHHCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]