| Definition | Xylella fastidiosa M23 chromosome, complete genome. |
|---|---|
| Accession | NC_010577 |
| Length | 2,535,690 |
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The map label for this gene is 182681197
Identifier: 182681197
GI number: 182681197
Start: 756818
End: 758740
Strand: Direct
Name: 182681197
Synonym: XfasM23_0641
Alternate gene names: NA
Gene position: 756818-758740 (Clockwise)
Preceding gene: 182681196
Following gene: 182681198
Centisome position: 29.85
GC content: 55.02
Gene sequence:
>1923_bases ATGGGGTGGTTATTACCCTTTGCCGTTTGCGCGAGTAGCAATACTGATCGTATTGTGGTCATTCGATCCAGAATTCCGGC TGCACCGGTTATATTGGTGTTCATGAAATCTATGGGCAAGGGCGCATTAAGCCCGGTATATGGCTTGACTGCCTTGTTTT TAGTGCTGTGCAGCAATGCTGCGTTGGCGCTTGGGCTTGGTGATATTCGTGTGCTTTCCAAGCCAGGACAGCCTTTGGTA GCAGAGATCCCGGTGATCTCTAACGAGGCCGGCGAGCTTGACGATGTGCGCGTTGCGCTGGCTTCGCCAGAGACCTTCGC CCGGGTTGGATTAGAGCGCCCCAACGGTTTTCTGGACGATTTGCAGTTTCAATTCTCCAAGGATCGTCACGGTCGCGCGG TTGTTCGGGTGACTAGCAACCAGTCTGTGCAGCAGAAGGCAATCAACTTTTTGATTGACGTGGAGTGGAAACAAGGGCGG TTAGTACGTGAATACTCCGCTTTGATTGATGCGCCTAATACTGCCGCAGCAATTGCTGAGCCGGCGATCAATGCGCCGCA GGTGGCTTCTGCCAATGTCATTGTGCGTTCTGCGCCAGCTCCCAGCGTTCCTGTGCCCCCTCCCCCTCCTGCCGTTCACG TTACTGCGCCGACCCCATCCATATCCAGTGTTGACGAGGCGACGGATACAGCCTCGGCCGATGTGGGTGATGCAACAGAA ACAGAAGGTGTAGGGACCGTGGCCACTCCTGCTGCGCCGCCATCCGATGCAGGGCCGGTCACGGTGCAACGCGGCCAAAC ACTATCGCAACTTGCTTCTCAGTTAGCGCGCCAGAGTGGGCGTACCTTGGACCAAACCATGCTGGCGATGTTGCGTACTA ATCCGAGTGCCTTCATCGGTAGCAATATCAACTTACTTAAACAGGGTGCTGTGCTGCGCACTCCCACGCAGGAGGCGCTG AGTGAGCTTGGGGCTGCCGAAGCTAAGGCAATGGTGCGTGAACAGGCTGCGCAGTGGCGTCAAGCACGTGCAAGCATCCC GCAGCCAGCCGAATCAGGGGCTGCGTCACAGTCGCGTGCTGTTGCTGTTCCCGATACAGCGACGGATCGGCTTGAAATCG CGCCAGCCGTACCCATAGACACCAAGAAGGCTGGCACTATCAGTGGTACCAGCAATTCAAGAGAGGGCGATATGCCTGGT GGGGAGCAATTACAACAAGCACGCGAAGACATTGCCAGCCGCGACGCTGAGATTCAAGATTTGCGTTCCCGACTTATTGA TTTGGAACAACTGCGCAAAAAACAGCAGCAATTGATCGCGTTGAAGGACAGTGAGCTGGCAGCGGCTCAACAGCATTTGC CAAAAACCCAGGGACATAGCAGGTTGGGCAATGGGTCAATGATCCTGTTAGGTGGTGCTGCTTTGCTGTTTATCTGCATG GTGTGGTGGTGGGTGAACCGCCGTCCCAAGCCTTCGCCGTTGCCTCATTTGCCATCTCGTGAATTCGACTCGGAGGCATT GGTTGTTGCTTTTCCTCACACTGCTGCTGTGTCGCGGAGTGATTTTTTAGAGATGCCTGATCAGGTGGTGCGTGAGGGCG AACGCATGCACGTTCCTGACCTTACTCTTGATCGTGTCTCGGCAGGTATGTATACCTCCGTCAATCCATCTGTTAAGCCT CAGACATTTGTCCAGGTTCAAGCTGCTAATGTTCAAGCTGCTAGTGTTGCTGCGCAGCAAAGTCAGCCCCAGGCACAGCA GCCTGGCCCCCCATCCGGGGTGCGTGATCGTCTGGAACTGGCGGTTGCCTATCTTGATTTGGGGGATAAGGAGACCGCGC GTAGTCTTTTGCGTGAAGTGGTGGTCACCGGAGATGATGTTGCACGTGCCGAAGCAGCAGCATTACTTAATCAAATTGCA TAA
Upstream 100 bases:
>100_bases GCTGCGCTTAATGCAATACAGCTTGCTGAACTAGTGACGGGCGAGACGATTTGAGCATACTAGGATTTCCCCGTAGTGGA ACGGTATACAGGTGGCGGCG
Downstream 100 bases:
>100_bases CAGGCTCTGCCTGTCGGTTAAGCTCCAGTGACCAGGATATGATGATGCGTTATGCGTTAGGCGTAGAGTACGACGGCAGC GAGTTTCTGGGCTGGCAACA
Product: hypothetical protein
Products: NA
Alternate protein names: Tfp Pilus Assembly Protein FimV-Like Protein; LysM Domain-Containing Protein; Transmembrane Protein; LysM Domain Protein; FimV N-Terminal Domain Protein; Tfp Pilus Assembly Protein FimV-Like; Transmembrane Tfp Pilus Assembly Protein FimV; TPR Repeat-Containing Protein; Type 4 Pilus Biogenesis; FimV N-Terminal Domain-Containing Protein; FimV C-Terminal Domain-Containing Protein; Protein Containing Tetratricopeptide Repeats
Number of amino acids: Translated: 640; Mature: 639
Protein sequence:
>640_residues MGWLLPFAVCASSNTDRIVVIRSRIPAAPVILVFMKSMGKGALSPVYGLTALFLVLCSNAALALGLGDIRVLSKPGQPLV AEIPVISNEAGELDDVRVALASPETFARVGLERPNGFLDDLQFQFSKDRHGRAVVRVTSNQSVQQKAINFLIDVEWKQGR LVREYSALIDAPNTAAAIAEPAINAPQVASANVIVRSAPAPSVPVPPPPPAVHVTAPTPSISSVDEATDTASADVGDATE TEGVGTVATPAAPPSDAGPVTVQRGQTLSQLASQLARQSGRTLDQTMLAMLRTNPSAFIGSNINLLKQGAVLRTPTQEAL SELGAAEAKAMVREQAAQWRQARASIPQPAESGAASQSRAVAVPDTATDRLEIAPAVPIDTKKAGTISGTSNSREGDMPG GEQLQQAREDIASRDAEIQDLRSRLIDLEQLRKKQQQLIALKDSELAAAQQHLPKTQGHSRLGNGSMILLGGAALLFICM VWWWVNRRPKPSPLPHLPSREFDSEALVVAFPHTAAVSRSDFLEMPDQVVREGERMHVPDLTLDRVSAGMYTSVNPSVKP QTFVQVQAANVQAASVAAQQSQPQAQQPGPPSGVRDRLELAVAYLDLGDKETARSLLREVVVTGDDVARAEAAALLNQIA
Sequences:
>Translated_640_residues MGWLLPFAVCASSNTDRIVVIRSRIPAAPVILVFMKSMGKGALSPVYGLTALFLVLCSNAALALGLGDIRVLSKPGQPLV AEIPVISNEAGELDDVRVALASPETFARVGLERPNGFLDDLQFQFSKDRHGRAVVRVTSNQSVQQKAINFLIDVEWKQGR LVREYSALIDAPNTAAAIAEPAINAPQVASANVIVRSAPAPSVPVPPPPPAVHVTAPTPSISSVDEATDTASADVGDATE TEGVGTVATPAAPPSDAGPVTVQRGQTLSQLASQLARQSGRTLDQTMLAMLRTNPSAFIGSNINLLKQGAVLRTPTQEAL SELGAAEAKAMVREQAAQWRQARASIPQPAESGAASQSRAVAVPDTATDRLEIAPAVPIDTKKAGTISGTSNSREGDMPG GEQLQQAREDIASRDAEIQDLRSRLIDLEQLRKKQQQLIALKDSELAAAQQHLPKTQGHSRLGNGSMILLGGAALLFICM VWWWVNRRPKPSPLPHLPSREFDSEALVVAFPHTAAVSRSDFLEMPDQVVREGERMHVPDLTLDRVSAGMYTSVNPSVKP QTFVQVQAANVQAASVAAQQSQPQAQQPGPPSGVRDRLELAVAYLDLGDKETARSLLREVVVTGDDVARAEAAALLNQIA >Mature_639_residues GWLLPFAVCASSNTDRIVVIRSRIPAAPVILVFMKSMGKGALSPVYGLTALFLVLCSNAALALGLGDIRVLSKPGQPLVA EIPVISNEAGELDDVRVALASPETFARVGLERPNGFLDDLQFQFSKDRHGRAVVRVTSNQSVQQKAINFLIDVEWKQGRL VREYSALIDAPNTAAAIAEPAINAPQVASANVIVRSAPAPSVPVPPPPPAVHVTAPTPSISSVDEATDTASADVGDATET EGVGTVATPAAPPSDAGPVTVQRGQTLSQLASQLARQSGRTLDQTMLAMLRTNPSAFIGSNINLLKQGAVLRTPTQEALS ELGAAEAKAMVREQAAQWRQARASIPQPAESGAASQSRAVAVPDTATDRLEIAPAVPIDTKKAGTISGTSNSREGDMPGG EQLQQAREDIASRDAEIQDLRSRLIDLEQLRKKQQQLIALKDSELAAAQQHLPKTQGHSRLGNGSMILLGGAALLFICMV WWWVNRRPKPSPLPHLPSREFDSEALVVAFPHTAAVSRSDFLEMPDQVVREGERMHVPDLTLDRVSAGMYTSVNPSVKPQ TFVQVQAANVQAASVAAQQSQPQAQQPGPPSGVRDRLELAVAYLDLGDKETARSLLREVVVTGDDVARAEAAALLNQIA
Specific function: Unknown
COG id: COG3170
COG function: function code NU; Tfp pilus assembly protein FimV
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 67947; Mature: 67816
Theoretical pI: Translated: 5.78; Mature: 5.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGWLLPFAVCASSNTDRIVVIRSRIPAAPVILVFMKSMGKGALSPVYGLTALFLVLCSNA CCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC ALALGLGDIRVLSKPGQPLVAEIPVISNEAGELDDVRVALASPETFARVGLERPNGFLDD CEEEECCCEEEECCCCCCCEEECCEECCCCCCCCCEEEEECCCHHHHHHCCCCCCCCHHH LQFQFSKDRHGRAVVRVTSNQSVQQKAINFLIDVEWKQGRLVREYSALIDAPNTAAAIAE HHHHHCCCCCCCEEEEECCCCHHHHHHCEEEEEEECCCCCHHHHHHHHHCCCCCHHHHHC PAINAPQVASANVIVRSAPAPSVPVPPPPPAVHVTAPTPSISSVDEATDTASADVGDATE CCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCCC TEGVGTVATPAAPPSDAGPVTVQRGQTLSQLASQLARQSGRTLDQTMLAMLRTNPSAFIG CCCCCCEECCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEC SNINLLKQGAVLRTPTQEALSELGAAEAKAMVREQAAQWRQARASIPQPAESGAASQSRA CCCHHHHCCCEEECCHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCE VAVPDTATDRLEIAPAVPIDTKKAGTISGTSNSREGDMPGGEQLQQAREDIASRDAEIQD EECCCCCCCCEEECCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHH LRSRLIDLEQLRKKQQQLIALKDSELAAAQQHLPKTQGHSRLGNGSMILLGGAALLFICM HHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHCCCCCCCCCCCCCCEEEEHHHHHHHHHH VWWWVNRRPKPSPLPHLPSREFDSEALVVAFPHTAAVSRSDFLEMPDQVVREGERMHVPD HHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHCCHHHHHHCCHHHHHCCCCEECCC LTLDRVSAGMYTSVNPSVKPQTFVQVQAANVQAASVAAQQSQPQAQQPGPPSGVRDRLEL CCHHHHCCCCEECCCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHH AVAYLDLGDKETARSLLREVVVTGDDVARAEAAALLNQIA HHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC >Mature Secondary Structure GWLLPFAVCASSNTDRIVVIRSRIPAAPVILVFMKSMGKGALSPVYGLTALFLVLCSNA CCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC ALALGLGDIRVLSKPGQPLVAEIPVISNEAGELDDVRVALASPETFARVGLERPNGFLDD CEEEECCCEEEECCCCCCCEEECCEECCCCCCCCCEEEEECCCHHHHHHCCCCCCCCHHH LQFQFSKDRHGRAVVRVTSNQSVQQKAINFLIDVEWKQGRLVREYSALIDAPNTAAAIAE HHHHHCCCCCCCEEEEECCCCHHHHHHCEEEEEEECCCCCHHHHHHHHHCCCCCHHHHHC PAINAPQVASANVIVRSAPAPSVPVPPPPPAVHVTAPTPSISSVDEATDTASADVGDATE CCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCCC TEGVGTVATPAAPPSDAGPVTVQRGQTLSQLASQLARQSGRTLDQTMLAMLRTNPSAFIG CCCCCCEECCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEC SNINLLKQGAVLRTPTQEALSELGAAEAKAMVREQAAQWRQARASIPQPAESGAASQSRA CCCHHHHCCCEEECCHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCE VAVPDTATDRLEIAPAVPIDTKKAGTISGTSNSREGDMPGGEQLQQAREDIASRDAEIQD EECCCCCCCCEEECCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHH LRSRLIDLEQLRKKQQQLIALKDSELAAAQQHLPKTQGHSRLGNGSMILLGGAALLFICM HHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHCCCCCCCCCCCCCCEEEEHHHHHHHHHH VWWWVNRRPKPSPLPHLPSREFDSEALVVAFPHTAAVSRSDFLEMPDQVVREGERMHVPD HHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHCCHHHHHHCCHHHHHCCCCEECCC LTLDRVSAGMYTSVNPSVKPQTFVQVQAANVQAASVAAQQSQPQAQQPGPPSGVRDRLEL CCHHHHCCCCEECCCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHH AVAYLDLGDKETARSLLREVVVTGDDVARAEAAALLNQIA HHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA