Definition | Xylella fastidiosa M23 chromosome, complete genome. |
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Accession | NC_010577 |
Length | 2,535,690 |
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The map label for this gene is pyrG
Identifier: 182681124
GI number: 182681124
Start: 674637
End: 676301
Strand: Direct
Name: pyrG
Synonym: XfasM23_0566
Alternate gene names: 182681124
Gene position: 674637-676301 (Clockwise)
Preceding gene: 182681123
Following gene: 182681125
Centisome position: 26.61
GC content: 53.27
Gene sequence:
>1665_bases ATGACTCCTCTTATTTTTGTTACTGGCGGTGTTGTTTCTTCCCTTGGCAAGGGCATCGCGGCGGCTTCCCTTGCGTCCAT CCTTGAAGCACGTGGTTTGAAGGTGACGATGGTGAAGTTGGATCCTTACATCAACGTGGATCCTGGGACGATGAGTCCGT TCCAACATGGTGAGGTTTATGTCACTGACGATGGTGCTGAGACTGATCTGGATTTGGGCCATTACGAGCGTTTTGTACGC ACGCGGTTGTCGCGTAAAAATTCGGTCACTACTGGTAGGATTTACCAGAATGTGATTTGCAAGGAGCGCCGCGGTGACTA TCTCGGTGCGACCGTACAGGTGATCCCTCACATTACCGACGAGATTCGCCGCTGCATTGATGAGGCTACAGCAAGCTTTG ATGTGGCGTTGGTGGAGATTGGCGGTACTGTCGGGGATATTGAATCGCTCCCTTTCTTGGAGGCGATCCGTCAAGTGCGG ATTGAGCGTGGTGCGGAGAGGACGATGTTCATGCACTTGACGCTGGTGCCGTATATTGCCGCTGCTGGGGAACTCAAGAC AAAACCGACGCAGCATTCTGTCAAAGAGCTGCGTTCGATCGGTATTCAGCCGGATGTGTTGTTGTGTCGTTCCGAGCAGG TGATTCCGGATTCAGAGCGTCGCAAAATTGCATTGTTTACCAACGTTTCCGAGCGGGCAGTGATTGGCTGTCCTGATATT GACGTGTTGTATGGGATGCCTTTGGAGCTGCGTCGCCAGGGTCTTGATGAAATTGTGATTGATCAGTTCAAACTAAGCGG AACAGCGAGTTTGGCTGATTTGTCCGAATGGGAGGATGTGGTCGACGCGATTAAGCATCCTCTGGATGAAGTCACTATCG CTGTTGTCGGCAAGTACGTCGATTATCAGGATGCCTATAAGTCCGTGGGTGAGGCACTCAAGCATGGTGGCCTGCGTCAA CGTACTAAGGTCAATCTGAAGTGGGTTGAGGCTCAGGACTTGGAGGGGAGCGATATGGCTGCTCTTAAAGACATTGACGG TATTTTGGTGCCGGGGGGATTCGGTGATCGTGGTTTTGAGGGGAAGGTGCTCGCCTCCAGGTACGCGCGTGAGCAGCGGG TGCCGTATTTCGGCATTTGCTATGGTATGCAGGCGGCGGTGGTGGATTACGCGCGCCATGTTGCCGGGCTTGAGGGTGCC AATAGTACTGAGAATGATCGCCAGTCGTCTCACCCTGTCATTGCTTTGATTACCGAGTGGCGGACCACAACAGGTGAGGT CGAGCGTCGTGATGAGAAGTCCGATCTAGGCGGTACGATGCGTCTTGGTTTGCAGGAGCAACGTCTCAAGGCAGGGACAC TGGCGCGCGAGTTGTATGGAAGGGATGTGGTTGGTGAGCGTCATCGGCATCGTTACGAATTTAATAATCGCTACCGGACT CAGTTGGAGGATGCTGGTTTGGTGATCGCTGCTAAATCAATGGACGACACCTTGGTGGAGATGATCGAGTTACCACGTGA GATGCATCCTTGGTTTCTGGCGTGCCAGGCGCATCCTGAGTTCTTGTCGACTCCACGGGATGGTCATCCGCTCTTTATTG GTTTTGTGAAGGCGTCGCGCGCGCGCAAGGCTGGAGGCAAATTGCTCAGGGAAGTCTGCGTTTGA
Upstream 100 bases:
>100_bases TTAGTTTTGTGCCCCAATACATTTGTCGTTCTTAGTGGTGATGCTTGGGCATCGGAGAAGTGCCCGTTAGACTATTGTTT TACCTGAGCCATGTGGTCCC
Downstream 100 bases:
>100_bases ACCTATGTCTGTTTTTGATCTGATGTTTGATTTTTGATGAAGATGTGTTTCGGATCGGAATCAAGATATCTTCAGGGAGG TTGAGGGAGGGACATGTCCT
Product: CTP synthetase
Products: NA
Alternate protein names: CTP synthetase; UTP--ammonia ligase
Number of amino acids: Translated: 554; Mature: 553
Protein sequence:
>554_residues MTPLIFVTGGVVSSLGKGIAAASLASILEARGLKVTMVKLDPYINVDPGTMSPFQHGEVYVTDDGAETDLDLGHYERFVR TRLSRKNSVTTGRIYQNVICKERRGDYLGATVQVIPHITDEIRRCIDEATASFDVALVEIGGTVGDIESLPFLEAIRQVR IERGAERTMFMHLTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDVLLCRSEQVIPDSERRKIALFTNVSERAVIGCPDI DVLYGMPLELRRQGLDEIVIDQFKLSGTASLADLSEWEDVVDAIKHPLDEVTIAVVGKYVDYQDAYKSVGEALKHGGLRQ RTKVNLKWVEAQDLEGSDMAALKDIDGILVPGGFGDRGFEGKVLASRYAREQRVPYFGICYGMQAAVVDYARHVAGLEGA NSTENDRQSSHPVIALITEWRTTTGEVERRDEKSDLGGTMRLGLQEQRLKAGTLARELYGRDVVGERHRHRYEFNNRYRT QLEDAGLVIAAKSMDDTLVEMIELPREMHPWFLACQAHPEFLSTPRDGHPLFIGFVKASRARKAGGKLLREVCV
Sequences:
>Translated_554_residues MTPLIFVTGGVVSSLGKGIAAASLASILEARGLKVTMVKLDPYINVDPGTMSPFQHGEVYVTDDGAETDLDLGHYERFVR TRLSRKNSVTTGRIYQNVICKERRGDYLGATVQVIPHITDEIRRCIDEATASFDVALVEIGGTVGDIESLPFLEAIRQVR IERGAERTMFMHLTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDVLLCRSEQVIPDSERRKIALFTNVSERAVIGCPDI DVLYGMPLELRRQGLDEIVIDQFKLSGTASLADLSEWEDVVDAIKHPLDEVTIAVVGKYVDYQDAYKSVGEALKHGGLRQ RTKVNLKWVEAQDLEGSDMAALKDIDGILVPGGFGDRGFEGKVLASRYAREQRVPYFGICYGMQAAVVDYARHVAGLEGA NSTENDRQSSHPVIALITEWRTTTGEVERRDEKSDLGGTMRLGLQEQRLKAGTLARELYGRDVVGERHRHRYEFNNRYRT QLEDAGLVIAAKSMDDTLVEMIELPREMHPWFLACQAHPEFLSTPRDGHPLFIGFVKASRARKAGGKLLREVCV >Mature_553_residues TPLIFVTGGVVSSLGKGIAAASLASILEARGLKVTMVKLDPYINVDPGTMSPFQHGEVYVTDDGAETDLDLGHYERFVRT RLSRKNSVTTGRIYQNVICKERRGDYLGATVQVIPHITDEIRRCIDEATASFDVALVEIGGTVGDIESLPFLEAIRQVRI ERGAERTMFMHLTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDVLLCRSEQVIPDSERRKIALFTNVSERAVIGCPDID VLYGMPLELRRQGLDEIVIDQFKLSGTASLADLSEWEDVVDAIKHPLDEVTIAVVGKYVDYQDAYKSVGEALKHGGLRQR TKVNLKWVEAQDLEGSDMAALKDIDGILVPGGFGDRGFEGKVLASRYAREQRVPYFGICYGMQAAVVDYARHVAGLEGAN STENDRQSSHPVIALITEWRTTTGEVERRDEKSDLGGTMRLGLQEQRLKAGTLARELYGRDVVGERHRHRYEFNNRYRTQ LEDAGLVIAAKSMDDTLVEMIELPREMHPWFLACQAHPEFLSTPRDGHPLFIGFVKASRARKAGGKLLREVCV
Specific function: Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen
COG id: COG0504
COG function: function code F; CTP synthase (UTP-ammonia lyase)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 glutamine amidotransferase type-1 domain
Homologues:
Organism=Homo sapiens, GI148491070, Length=560, Percent_Identity=43.2142857142857, Blast_Score=455, Evalue=1e-128, Organism=Homo sapiens, GI28559085, Length=558, Percent_Identity=41.3978494623656, Blast_Score=431, Evalue=1e-120, Organism=Homo sapiens, GI28559083, Length=558, Percent_Identity=41.3978494623656, Blast_Score=431, Evalue=1e-120, Organism=Homo sapiens, GI221316689, Length=558, Percent_Identity=41.3978494623656, Blast_Score=431, Evalue=1e-120, Organism=Escherichia coli, GI1789142, Length=538, Percent_Identity=65.2416356877323, Blast_Score=700, Evalue=0.0, Organism=Caenorhabditis elegans, GI25148299, Length=605, Percent_Identity=36.3636363636364, Blast_Score=392, Evalue=1e-109, Organism=Saccharomyces cerevisiae, GI6319432, Length=569, Percent_Identity=40.9490333919156, Blast_Score=427, Evalue=1e-120, Organism=Saccharomyces cerevisiae, GI6322563, Length=569, Percent_Identity=40.7732864674868, Blast_Score=422, Evalue=1e-119, Organism=Drosophila melanogaster, GI24664469, Length=560, Percent_Identity=44.1071428571429, Blast_Score=451, Evalue=1e-127, Organism=Drosophila melanogaster, GI21357815, Length=507, Percent_Identity=42.8007889546351, Blast_Score=382, Evalue=1e-106,
Paralogues:
None
Copy number: 480 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): PYRG_XYLF2 (B2I935)
Other databases:
- EMBL: CP001011 - RefSeq: YP_001829284.1 - ProteinModelPortal: B2I935 - SMR: B2I935 - GeneID: 6203725 - GenomeReviews: CP001011_GR - KEGG: xfn:XfasM23_0566 - HOGENOM: HBG597806 - OMA: RVTMQKL - ProtClustDB: PRK05380 - HAMAP: MF_01227 - InterPro: IPR004468 - InterPro: IPR017456 - InterPro: IPR017926 - InterPro: IPR000991 - TIGRFAMs: TIGR00337
Pfam domain/function: PF06418 CTP_synth_N; PF00117 GATase
EC number: =6.3.4.2
Molecular weight: Translated: 61565; Mature: 61434
Theoretical pI: Translated: 6.18; Mature: 6.18
Prosite motif: PS51273 GATASE_TYPE_1; PS00442 GATASE_TYPE_I
Important sites: ACT_SITE 380-380 ACT_SITE 518-518 ACT_SITE 520-520
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPLIFVTGGVVSSLGKGIAAASLASILEARGLKVTMVKLDPYINVDPGTMSPFQHGEVY CCCEEEECCHHHHHHCCHHHHHHHHHHHHHCCCEEEEEEECCEEECCCCCCCCCCCCEEE VTDDGAETDLDLGHYERFVRTRLSRKNSVTTGRIYQNVICKERRGDYLGATVQVIPHITD EECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH EIRRCIDEATASFDVALVEIGGTVGDIESLPFLEAIRQVRIERGAERTMFMHLTLVPYIA HHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHHHHH AAGELKTKPTQHSVKELRSIGIQPDVLLCRSEQVIPDSERRKIALFTNVSERAVIGCPDI HCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCEEECCCCC DVLYGMPLELRRQGLDEIVIDQFKLSGTASLADLSEWEDVVDAIKHPLDEVTIAVVGKYV HHHCCCCHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC DYQDAYKSVGEALKHGGLRQRTKVNLKWVEAQDLEGSDMAALKDIDGILVPGGFGDRGFE CHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCHHHHHCCCCEEECCCCCCCCCC GKVLASRYAREQRVPYFGICYGMQAAVVDYARHVAGLEGANSTENDRQSSHPVIALITEW CHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECC RTTTGEVERRDEKSDLGGTMRLGLQEQRLKAGTLARELYGRDVVGERHRHRYEFNNRYRT CCCCCHHHHCCCHHCCCCEEECCCHHHHHHHHHHHHHHHCCCHHCHHHHHHCCCCCCHHH QLEDAGLVIAAKSMDDTLVEMIELPREMHPWFLACQAHPEFLSTPRDGHPLFIGFVKASR HHCCCCEEEEECCCCHHHHHHHHCHHHCCCEEEEEECCHHHHCCCCCCCCEEEEEEEHHH ARKAGGKLLREVCV HHHHHHHHHHHHCC >Mature Secondary Structure TPLIFVTGGVVSSLGKGIAAASLASILEARGLKVTMVKLDPYINVDPGTMSPFQHGEVY CCEEEECCHHHHHHCCHHHHHHHHHHHHHCCCEEEEEEECCEEECCCCCCCCCCCCEEE VTDDGAETDLDLGHYERFVRTRLSRKNSVTTGRIYQNVICKERRGDYLGATVQVIPHITD EECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH EIRRCIDEATASFDVALVEIGGTVGDIESLPFLEAIRQVRIERGAERTMFMHLTLVPYIA HHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHHHHH AAGELKTKPTQHSVKELRSIGIQPDVLLCRSEQVIPDSERRKIALFTNVSERAVIGCPDI HCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCEEECCCCC DVLYGMPLELRRQGLDEIVIDQFKLSGTASLADLSEWEDVVDAIKHPLDEVTIAVVGKYV HHHCCCCHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC DYQDAYKSVGEALKHGGLRQRTKVNLKWVEAQDLEGSDMAALKDIDGILVPGGFGDRGFE CHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCHHHHHCCCCEEECCCCCCCCCC GKVLASRYAREQRVPYFGICYGMQAAVVDYARHVAGLEGANSTENDRQSSHPVIALITEW CHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECC RTTTGEVERRDEKSDLGGTMRLGLQEQRLKAGTLARELYGRDVVGERHRHRYEFNNRYRT CCCCCHHHHCCCHHCCCCEEECCCHHHHHHHHHHHHHHHCCCHHCHHHHHHCCCCCCHHH QLEDAGLVIAAKSMDDTLVEMIELPREMHPWFLACQAHPEFLSTPRDGHPLFIGFVKASR HHCCCCEEEEECCCCHHHHHHHHCHHHCCCEEEEEECCHHHHCCCCCCCCEEEEEEEHHH ARKAGGKLLREVCV HHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA