Definition | Xylella fastidiosa M23 chromosome, complete genome. |
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Accession | NC_010577 |
Length | 2,535,690 |
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The map label for this gene is coaBC [H]
Identifier: 182680682
GI number: 182680682
Start: 150219
End: 151448
Strand: Direct
Name: coaBC [H]
Synonym: XfasM23_0111
Alternate gene names: 182680682
Gene position: 150219-151448 (Clockwise)
Preceding gene: 182680677
Following gene: 182680683
Centisome position: 5.92
GC content: 55.45
Gene sequence:
>1230_bases GTGACTGGATCTCATCAGCCACGGTCATTGAACGGACAGCGTTTGCTGTTGTGTGTCAGTGGTGGTATTGCTGCTTATAA ATCGCTTGAGCTTGTGCGCCGCCTTTGTGGTGCGGGTGCTCAGGTCCAGGTTGCGATGACTGCTAGTGCGCAGCAGTTTG TCACGCCACTTAGTTTCCAGGCATTGTCTGGCCAATCGACCCGTACCACGCTGTGGGATGGTAACGCTGAACAGGCGATG GGGCATATTGAGTTGGCGCGTTGGGCCGAGCGTGTTTTGATTGCTCCTGCTAGTGCTGATGTGATCGCGCGGTTGGCGCA TGGTTTGGCGGATGATTTGGTGACGACTCTGTGTTTGGCGACAACGGCGCCGCTGATCATATGCCCAGCGATGAACCACA ATATGTGGCTGCATCCAGCGACTCAGGCGAATGTTGCGATGTTGTTGGGGCGTGGTGTGCAGGTCATCGGACCAGAGGAT GGTCCGTTGGCAGAAGGTGTGTCTGGGTTGGGCCGTATGAGCGAACCAGAGGCGATTGTTGTTGCGTTGGTTCAGGGGGT GTCTCCAGCTCCAGTTCACGGTGGTTTGTTCCATGGGCAGCGCATTGTGATTAGTGCTGGACCCACATTCGAAGATTTGG ATCCGGTGCGTTACCTTGGCAATCGCAGCAGTGGCAAGATGGGTTTTGCTTTGGCTAGTGCGGCGGTGTCCCATGGGGCT GAGGTGGTGTTGGTGGCTGGTCCGGTGTATCAGCCAACTCCACCTGGGGTGATTCGGGTGGATGTACGTTCGGCGGCACA GATGCGCGATGCAGTCCTCAGCGCGTTCCCCGCGGATGTTTACATCGGTGCAGCTGCGGTGGCTGATTACGCACCTAAAT CGGTGTTGCCACAAAAGATCAAGAAGTCTGGCCAGACGCTGATCCTGGAGTTGGTGCGTACCCAAGACATCTTGTCAGAG GTGGCAGCGCAGACGGCTAACCTGAAATTTGTGGTTGGTTTCGCTGCAGAGACGCATGATGTTGCGTGCTACGCACGCGG TAAATTGGCTGCCAAGCACTTGGATTTGATTATCGCCAACCAGGTTGGGATTGTTGGAAACGGTTTTGAAAGTGATGACA ATGCTGTCACTGCGTATTGGCAGGGTGGCGAACGCGTTTTCGCTAGTTGCAGTAAGGTGGAGTTGGCTGAGCGCCTGCTG GCACTGATTGCTGAAAGGATGCAGACATGA
Upstream 100 bases:
>100_bases CATCTGTGTAGGATGCCTAGTCTCATGCTTCTCTGATATCAGACTGGAATGGATCATCGGCTAATCTAGTCGTCCTAATT AACTGTAGGAATCAACTGAG
Downstream 100 bases:
>100_bases GTGCTGCTGTAAAACCACTGCAGATCAAGATTCTGGATCCTCGTCTCGGTACCGTTTGGCCGCTGCCGACCTATGCGACG GAAGCAAGTGCTGGGCTTGA
Product: bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
Products: NA
Alternate protein names: DNA/pantothenate metabolism flavoprotein; Phosphopantothenoylcysteine decarboxylase; PPCDC; CoaC; Phosphopantothenate--cysteine ligase; CoaB; PPC synthetase; PPCS; Phosphopantothenoylcysteine synthase [H]
Number of amino acids: Translated: 409; Mature: 408
Protein sequence:
>409_residues MTGSHQPRSLNGQRLLLCVSGGIAAYKSLELVRRLCGAGAQVQVAMTASAQQFVTPLSFQALSGQSTRTTLWDGNAEQAM GHIELARWAERVLIAPASADVIARLAHGLADDLVTTLCLATTAPLIICPAMNHNMWLHPATQANVAMLLGRGVQVIGPED GPLAEGVSGLGRMSEPEAIVVALVQGVSPAPVHGGLFHGQRIVISAGPTFEDLDPVRYLGNRSSGKMGFALASAAVSHGA EVVLVAGPVYQPTPPGVIRVDVRSAAQMRDAVLSAFPADVYIGAAAVADYAPKSVLPQKIKKSGQTLILELVRTQDILSE VAAQTANLKFVVGFAAETHDVACYARGKLAAKHLDLIIANQVGIVGNGFESDDNAVTAYWQGGERVFASCSKVELAERLL ALIAERMQT
Sequences:
>Translated_409_residues MTGSHQPRSLNGQRLLLCVSGGIAAYKSLELVRRLCGAGAQVQVAMTASAQQFVTPLSFQALSGQSTRTTLWDGNAEQAM GHIELARWAERVLIAPASADVIARLAHGLADDLVTTLCLATTAPLIICPAMNHNMWLHPATQANVAMLLGRGVQVIGPED GPLAEGVSGLGRMSEPEAIVVALVQGVSPAPVHGGLFHGQRIVISAGPTFEDLDPVRYLGNRSSGKMGFALASAAVSHGA EVVLVAGPVYQPTPPGVIRVDVRSAAQMRDAVLSAFPADVYIGAAAVADYAPKSVLPQKIKKSGQTLILELVRTQDILSE VAAQTANLKFVVGFAAETHDVACYARGKLAAKHLDLIIANQVGIVGNGFESDDNAVTAYWQGGERVFASCSKVELAERLL ALIAERMQT >Mature_408_residues TGSHQPRSLNGQRLLLCVSGGIAAYKSLELVRRLCGAGAQVQVAMTASAQQFVTPLSFQALSGQSTRTTLWDGNAEQAMG HIELARWAERVLIAPASADVIARLAHGLADDLVTTLCLATTAPLIICPAMNHNMWLHPATQANVAMLLGRGVQVIGPEDG PLAEGVSGLGRMSEPEAIVVALVQGVSPAPVHGGLFHGQRIVISAGPTFEDLDPVRYLGNRSSGKMGFALASAAVSHGAE VVLVAGPVYQPTPPGVIRVDVRSAAQMRDAVLSAFPADVYIGAAAVADYAPKSVLPQKIKKSGQTLILELVRTQDILSEV AAQTANLKFVVGFAAETHDVACYARGKLAAKHLDLIIANQVGIVGNGFESDDNAVTAYWQGGERVFASCSKVELAERLLA LIAERMQT
Specific function: Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine [H]
COG id: COG0452
COG function: function code H; Phosphopantothenoylcysteine synthetase/decarboxylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the PPC synthetase family [H]
Homologues:
Organism=Homo sapiens, GI71725351, Length=171, Percent_Identity=34.5029239766082, Blast_Score=87, Evalue=2e-17, Organism=Escherichia coli, GI87082301, Length=402, Percent_Identity=51.2437810945274, Blast_Score=347, Evalue=8e-97, Organism=Caenorhabditis elegans, GI17560194, Length=192, Percent_Identity=30.7291666666667, Blast_Score=75, Evalue=6e-14, Organism=Saccharomyces cerevisiae, GI6322762, Length=189, Percent_Identity=27.5132275132275, Blast_Score=67, Evalue=5e-12, Organism=Drosophila melanogaster, GI24657262, Length=187, Percent_Identity=27.2727272727273, Blast_Score=73, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005252 - InterPro: IPR007085 - InterPro: IPR003382 [H]
Pfam domain/function: PF04127 DFP; PF02441 Flavoprotein [H]
EC number: =4.1.1.36; =6.3.2.5 [H]
Molecular weight: Translated: 42934; Mature: 42803
Theoretical pI: Translated: 6.85; Mature: 6.85
Prosite motif: PS00018 EF_HAND_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGSHQPRSLNGQRLLLCVSGGIAAYKSLELVRRLCGAGAQVQVAMTASAQQFVTPLSFQ CCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHCCCHHH ALSGQSTRTTLWDGNAEQAMGHIELARWAERVLIAPASADVIARLAHGLADDLVTTLCLA CCCCCCCEEEEECCCHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHH TTAPLIICPAMNHNMWLHPATQANVAMLLGRGVQVIGPEDGPLAEGVSGLGRMSEPEAIV HCCCEEEEECCCCCEEECCCCCCCHHHHHCCCEEEECCCCCCHHHHHHHCCCCCCCHHEE VALVQGVSPAPVHGGLFHGQRIVISAGPTFEDLDPVRYLGNRSSGKMGFALASAAVSHGA HHHHHCCCCCCCCCCEECCCEEEEECCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCC EVVLVAGPVYQPTPPGVIRVDVRSAAQMRDAVLSAFPADVYIGAAAVADYAPKSVLPQKI EEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHH KKSGQTLILELVRTQDILSEVAAQTANLKFVVGFAAETHDVACYARGKLAAKHLDLIIAN HHCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCEEEEECCCHHHHHHCEEEEC QVGIVGNGFESDDNAVTAYWQGGERVFASCSKVELAERLLALIAERMQT CCCEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TGSHQPRSLNGQRLLLCVSGGIAAYKSLELVRRLCGAGAQVQVAMTASAQQFVTPLSFQ CCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHCCCHHH ALSGQSTRTTLWDGNAEQAMGHIELARWAERVLIAPASADVIARLAHGLADDLVTTLCLA CCCCCCCEEEEECCCHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHH TTAPLIICPAMNHNMWLHPATQANVAMLLGRGVQVIGPEDGPLAEGVSGLGRMSEPEAIV HCCCEEEEECCCCCEEECCCCCCCHHHHHCCCEEEECCCCCCHHHHHHHCCCCCCCHHEE VALVQGVSPAPVHGGLFHGQRIVISAGPTFEDLDPVRYLGNRSSGKMGFALASAAVSHGA HHHHHCCCCCCCCCCEECCCEEEEECCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCC EVVLVAGPVYQPTPPGVIRVDVRSAAQMRDAVLSAFPADVYIGAAAVADYAPKSVLPQKI EEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHH KKSGQTLILELVRTQDILSEVAAQTANLKFVVGFAAETHDVACYARGKLAAKHLDLIIAN HHCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCEEEEECCCHHHHHHCEEEEC QVGIVGNGFESDDNAVTAYWQGGERVFASCSKVELAERLLALIAERMQT CCCEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]