Definition | Xylella fastidiosa M23 chromosome, complete genome. |
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Accession | NC_010577 |
Length | 2,535,690 |
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The map label for this gene is pcoA [H]
Identifier: 182680663
GI number: 182680663
Start: 127509
End: 129329
Strand: Direct
Name: pcoA [H]
Synonym: XfasM23_0092
Alternate gene names: 182680663
Gene position: 127509-129329 (Clockwise)
Preceding gene: 182680662
Following gene: 182680664
Centisome position: 5.03
GC content: 57.77
Gene sequence:
>1821_bases ATGAACACTGTTACCTTCCCTTCCCAGGGAGGCATTGACCGGCGTCGCTTCCTAAAAGGCTTGGCGTTGGGAGGCGTCGT CGCCGGTACCGGCTTATGGCGTCTTCCTGTCCATGCAGCCAACCCTGAGTTGCCGCCACTGCAGCGGCGTACCACTCCCC TAGAGCTGCGTATCGGACAGTCCAGCGTTAATTTCACCGGACGTATGCGTCCAGCCATCACCGTTAATAACAGCTTGCCT GGACCCGTATTGCGTTGGCGCCAAGGCGATACGGTCCAAATACATGTCACCAATACCTTGCCCGATGTGATGACCTCAAT TCATTGGCACGGCATCGTTCTGCCCTCCAACATGGATGGCGTACCGGGCATGAGTTTCGACGGTATTGCACCAGGCGAAC ACTATCTATACCGCTTTCAGTTACACCAGTCTGGGACCTACTGGTACCACAGCCACGCCATGTTTCAAGAACAGGCCGGC CTGTATGGAGCGTTGATTATTGATCCACTGGAGCCGCCTCCCTACCGCGCCGACCGCGAGCACATCCTCCTATTCTCAGA TTGGACCGACCTGGACCCTGCCGCACTGTTTCGCAGGCTCAAAAAAATGTCCTCTTACGACAACACCTACCAACGCACCG TCCGCGATTTCTTCCATGACATACACCGTGATGGCCTGCGCACCACACTGGCCGATCGCCGCATGTGGGGCAGAATGCGG ATGACCCCGACAGACCTGTCCGATGTCAATGCCCATACCTATACCTACCTGCTGAACGGCACCACGCCAGCCGGCCACTG GACTGGATTGTTCCGCCCCGGAGAAAAAGTGCTATTACGGCTGATTAATGGTTCGGCGATGACCTATTTTGACGTCCGTA TTCCAGGCCTGAAACTGACCGTTGTCGCCGTGGATGGCCAATACGTCCATCCGGTGACCGTGGATGAATTACGTATTGCC CTCGCCGAAACCTATGATGTCCTGATCCAACCCCACGGCCAGGATGCCTTTGCAATCTTTGCCCAGGACATGGGCCGCAC CGGCTACGCCTGCGGCACCCTCGCCGTGCGTCCCGGCTTACACGCCCCCCTGCCGGCATTGGACCCGCGTCCTCGCCTGA CAATGCAGGACATGGGACACGGGATGACGCATGATCAGCATGGGAGTCGCGTCTCTGAAATGGCGGACATCCCAGGAATG ACCCATCCTGGCAGACTGGGCGATCATGCCAGCCACGCCAACCAGCCTCCTGCGCAGCCCCCTCATGGTTTACATAGCCT TCCGGCGGACAGAACAGCGCCGCAGCATCCTGCCAGCGAACAGAACAATCCCTTGGTGGACATGCATGTGGACGCACCAC AGCCGCGTTTGAATGATCCCGGCATTGGCTTGCGTGACAATGGCCGCCACGTCTTGACGTACGCTGATCTGCATAGCCTG TTCGATGATCCGGATGGACGTGAACCAGGGCGTGAGATCGAATTACATCTCACCGGCAATATGGAGAAATTCGCCTGGTC GTTTGATGGCATCCCATTTGCCTCCGCGCAACCCTTACGACTCAACTACGGTGAACGTGTACGCATCGTCTTGGTCAATG ACACCATGATGGCGCACCCCATTCACCTGCACGGCTTATGGAGTGACTTAGAGGATGCCAACGCCGCGTTTCAGGTCCGT AAACACACCATCGATATGCCGCCGGGTACACGCCGCAGCTACCGTGTGCGTGCCGATGCACTGGGGCGCTGGGCCTACCA CTGCCACATGCTGTACCACATGGAAAGCGGCATGATGCGTGAAGTACAGGTGCGCCCATGA
Upstream 100 bases:
>100_bases AGTCCCTGAGGGATGTTTCCTGTCCCCCATAGCGCACCTCCTCCGTATTCCCCTTGCTTGCTATCGTTCCGTCGCCAAAG CGCCGGACATGGGAGTCTCT
Downstream 100 bases:
>100_bases ACACCCGTACCTGGTTCGTATTGTTCTGCGTCGCTCTGCCACTCGTACCGCTGCAAGCGCAGCCGCGCCCGCAGACCGAA CAGACATCACCGGCGTTGAG
Product: CopA family copper resistance protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 606; Mature: 606
Protein sequence:
>606_residues MNTVTFPSQGGIDRRRFLKGLALGGVVAGTGLWRLPVHAANPELPPLQRRTTPLELRIGQSSVNFTGRMRPAITVNNSLP GPVLRWRQGDTVQIHVTNTLPDVMTSIHWHGIVLPSNMDGVPGMSFDGIAPGEHYLYRFQLHQSGTYWYHSHAMFQEQAG LYGALIIDPLEPPPYRADREHILLFSDWTDLDPAALFRRLKKMSSYDNTYQRTVRDFFHDIHRDGLRTTLADRRMWGRMR MTPTDLSDVNAHTYTYLLNGTTPAGHWTGLFRPGEKVLLRLINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVTVDELRIA LAETYDVLIQPHGQDAFAIFAQDMGRTGYACGTLAVRPGLHAPLPALDPRPRLTMQDMGHGMTHDQHGSRVSEMADIPGM THPGRLGDHASHANQPPAQPPHGLHSLPADRTAPQHPASEQNNPLVDMHVDAPQPRLNDPGIGLRDNGRHVLTYADLHSL FDDPDGREPGREIELHLTGNMEKFAWSFDGIPFASAQPLRLNYGERVRIVLVNDTMMAHPIHLHGLWSDLEDANAAFQVR KHTIDMPPGTRRSYRVRADALGRWAYHCHMLYHMESGMMREVQVRP
Sequences:
>Translated_606_residues MNTVTFPSQGGIDRRRFLKGLALGGVVAGTGLWRLPVHAANPELPPLQRRTTPLELRIGQSSVNFTGRMRPAITVNNSLP GPVLRWRQGDTVQIHVTNTLPDVMTSIHWHGIVLPSNMDGVPGMSFDGIAPGEHYLYRFQLHQSGTYWYHSHAMFQEQAG LYGALIIDPLEPPPYRADREHILLFSDWTDLDPAALFRRLKKMSSYDNTYQRTVRDFFHDIHRDGLRTTLADRRMWGRMR MTPTDLSDVNAHTYTYLLNGTTPAGHWTGLFRPGEKVLLRLINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVTVDELRIA LAETYDVLIQPHGQDAFAIFAQDMGRTGYACGTLAVRPGLHAPLPALDPRPRLTMQDMGHGMTHDQHGSRVSEMADIPGM THPGRLGDHASHANQPPAQPPHGLHSLPADRTAPQHPASEQNNPLVDMHVDAPQPRLNDPGIGLRDNGRHVLTYADLHSL FDDPDGREPGREIELHLTGNMEKFAWSFDGIPFASAQPLRLNYGERVRIVLVNDTMMAHPIHLHGLWSDLEDANAAFQVR KHTIDMPPGTRRSYRVRADALGRWAYHCHMLYHMESGMMREVQVRP >Mature_606_residues MNTVTFPSQGGIDRRRFLKGLALGGVVAGTGLWRLPVHAANPELPPLQRRTTPLELRIGQSSVNFTGRMRPAITVNNSLP GPVLRWRQGDTVQIHVTNTLPDVMTSIHWHGIVLPSNMDGVPGMSFDGIAPGEHYLYRFQLHQSGTYWYHSHAMFQEQAG LYGALIIDPLEPPPYRADREHILLFSDWTDLDPAALFRRLKKMSSYDNTYQRTVRDFFHDIHRDGLRTTLADRRMWGRMR MTPTDLSDVNAHTYTYLLNGTTPAGHWTGLFRPGEKVLLRLINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVTVDELRIA LAETYDVLIQPHGQDAFAIFAQDMGRTGYACGTLAVRPGLHAPLPALDPRPRLTMQDMGHGMTHDQHGSRVSEMADIPGM THPGRLGDHASHANQPPAQPPHGLHSLPADRTAPQHPASEQNNPLVDMHVDAPQPRLNDPGIGLRDNGRHVLTYADLHSL FDDPDGREPGREIELHLTGNMEKFAWSFDGIPFASAQPLRLNYGERVRIVLVNDTMMAHPIHLHGLWSDLEDANAAFQVR KHTIDMPPGTRRSYRVRADALGRWAYHCHMLYHMESGMMREVQVRP
Specific function: Required for the copper-inducible expression of copper resistance. May have oxidase activity [H]
COG id: COG2132
COG function: function code Q; Putative multicopper oxidases
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the multicopper oxidase family. CopA subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786314, Length=359, Percent_Identity=24.5125348189415, Blast_Score=72, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6323703, Length=267, Percent_Identity=30.3370786516854, Blast_Score=98, Evalue=3e-21, Organism=Saccharomyces cerevisiae, GI6320714, Length=303, Percent_Identity=25.7425742574257, Blast_Score=91, Evalue=4e-19, Organism=Saccharomyces cerevisiae, GI6321067, Length=267, Percent_Identity=28.0898876404494, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI24650186, Length=616, Percent_Identity=22.2402597402597, Blast_Score=98, Evalue=1e-20, Organism=Drosophila melanogaster, GI281360167, Length=299, Percent_Identity=27.7591973244147, Blast_Score=85, Evalue=2e-16, Organism=Drosophila melanogaster, GI24585842, Length=299, Percent_Identity=27.7591973244147, Blast_Score=85, Evalue=2e-16, Organism=Drosophila melanogaster, GI221330000, Length=299, Percent_Identity=27.7591973244147, Blast_Score=85, Evalue=2e-16, Organism=Drosophila melanogaster, GI221329998, Length=299, Percent_Identity=27.7591973244147, Blast_Score=84, Evalue=2e-16, Organism=Drosophila melanogaster, GI18859919, Length=571, Percent_Identity=23.292469352014, Blast_Score=82, Evalue=1e-15, Organism=Drosophila melanogaster, GI28574104, Length=139, Percent_Identity=36.6906474820144, Blast_Score=80, Evalue=4e-15,
Paralogues:
None
Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001117 - InterPro: IPR011706 - InterPro: IPR011707 - InterPro: IPR006376 - InterPro: IPR002355 - InterPro: IPR008972 - InterPro: IPR006311 [H]
Pfam domain/function: PF00394 Cu-oxidase; PF07731 Cu-oxidase_2; PF07732 Cu-oxidase_3 [H]
EC number: NA
Molecular weight: Translated: 68070; Mature: 68070
Theoretical pI: Translated: 7.38; Mature: 7.38
Prosite motif: PS00079 MULTICOPPER_OXIDASE1 ; PS00080 MULTICOPPER_OXIDASE2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTVTFPSQGGIDRRRFLKGLALGGVVAGTGLWRLPVHAANPELPPLQRRTTPLELRIGQ CCCCCCCCCCCCCHHHHHHHHHHCCEEECCCEEEEEEECCCCCCCCCCCCCCCEEEEECC SSVNFTGRMRPAITVNNSLPGPVLRWRQGDTVQIHVTNTLPDVMTSIHWHGIVLPSNMDG CCCCCCEECCCEEEECCCCCCCEEEECCCCEEEEEECCCCHHHHHHCCCCEEEECCCCCC VPGMSFDGIAPGEHYLYRFQLHQSGTYWYHSHAMFQEQAGLYGALIIDPLEPPPYRADRE CCCCCCCCCCCCCCEEEEEEEECCCCEEEECHHHHHHHCCCEEEEEEECCCCCCCCCCCC HILLFSDWTDLDPAALFRRLKKMSSYDNTYQRTVRDFFHDIHRDGLRTTLADRRMWGRMR EEEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC MTPTDLSDVNAHTYTYLLNGTTPAGHWTGLFRPGEKVLLRLINGSAMTYFDVRIPGLKLT CCCCCCCCCCCEEEEEEEECCCCCCCCEECCCCHHHHHHHHHCCCEEEEEEEEECCEEEE VVAVDGQYVHPVTVDELRIALAETYDVLIQPHGQDAFAIFAQDMGRTGYACGTLAVRPGL EEEECCCEECCCCHHHHHHHHHHCEEEEEECCCCCEEEEEEHHCCCCCCEEEEEEECCCC HAPLPALDPRPRLTMQDMGHGMTHDQHGSRVSEMADIPGMTHPGRLGDHASHANQPPAQP CCCCCCCCCCCCEEHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC PHGLHSLPADRTAPQHPASEQNNPLVDMHVDAPQPRLNDPGIGLRDNGRHVLTYADLHSL CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEHHHHHH FDDPDGREPGREIELHLTGNMEKFAWSFDGIPFASAQPLRLNYGERVRIVLVNDTMMAHP HCCCCCCCCCCEEEEEEECCCHHEEEECCCCCCCCCCCEEECCCCEEEEEEEECCEEECC IHLHGLWSDLEDANAAFQVRKHTIDMPPGTRRSYRVRADALGRWAYHCHMLYHMESGMMR EEEEECCCCHHCCCCEEEEEEEEECCCCCCCCEEEEEHHHHHHHHHEEEEEEEECCCCEE EVQVRP EEEECC >Mature Secondary Structure MNTVTFPSQGGIDRRRFLKGLALGGVVAGTGLWRLPVHAANPELPPLQRRTTPLELRIGQ CCCCCCCCCCCCCHHHHHHHHHHCCEEECCCEEEEEEECCCCCCCCCCCCCCCEEEEECC SSVNFTGRMRPAITVNNSLPGPVLRWRQGDTVQIHVTNTLPDVMTSIHWHGIVLPSNMDG CCCCCCEECCCEEEECCCCCCCEEEECCCCEEEEEECCCCHHHHHHCCCCEEEECCCCCC VPGMSFDGIAPGEHYLYRFQLHQSGTYWYHSHAMFQEQAGLYGALIIDPLEPPPYRADRE CCCCCCCCCCCCCCEEEEEEEECCCCEEEECHHHHHHHCCCEEEEEEECCCCCCCCCCCC HILLFSDWTDLDPAALFRRLKKMSSYDNTYQRTVRDFFHDIHRDGLRTTLADRRMWGRMR EEEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC MTPTDLSDVNAHTYTYLLNGTTPAGHWTGLFRPGEKVLLRLINGSAMTYFDVRIPGLKLT CCCCCCCCCCCEEEEEEEECCCCCCCCEECCCCHHHHHHHHHCCCEEEEEEEEECCEEEE VVAVDGQYVHPVTVDELRIALAETYDVLIQPHGQDAFAIFAQDMGRTGYACGTLAVRPGL EEEECCCEECCCCHHHHHHHHHHCEEEEEECCCCCEEEEEEHHCCCCCCEEEEEEECCCC HAPLPALDPRPRLTMQDMGHGMTHDQHGSRVSEMADIPGMTHPGRLGDHASHANQPPAQP CCCCCCCCCCCCEEHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC PHGLHSLPADRTAPQHPASEQNNPLVDMHVDAPQPRLNDPGIGLRDNGRHVLTYADLHSL CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEHHHHHH FDDPDGREPGREIELHLTGNMEKFAWSFDGIPFASAQPLRLNYGERVRIVLVNDTMMAHP HCCCCCCCCCCEEEEEEECCCHHEEEECCCCCCCCCCCEEECCCCEEEEEEEECCEEECC IHLHGLWSDLEDANAAFQVRKHTIDMPPGTRRSYRVRADALGRWAYHCHMLYHMESGMMR EEEEECCCCHHCCCCEEEEEEEEECCCCCCCCEEEEEHHHHHHHHHEEEEEEEECCCCEE EVQVRP EEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8594334 [H]