Definition | Clostridium botulinum B1 str. Okra, complete genome. |
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Accession | NC_010516 |
Length | 3,958,233 |
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The map label for this gene is 170755688
Identifier: 170755688
GI number: 170755688
Start: 3658998
End: 3660194
Strand: Reverse
Name: 170755688
Synonym: CLD_1156
Alternate gene names: NA
Gene position: 3660194-3658998 (Counterclockwise)
Preceding gene: 170757490
Following gene: 170756856
Centisome position: 92.47
GC content: 31.75
Gene sequence:
>1197_bases ATGAGAAATAACTATATAGATATAATTTATCAAAATGTAAAAATTCAAGAAGGACGACAGGCAATAGAGAAATTGTTGAT TGACTTCTATTTTGCCCGTGGATATTCCAGCAAAGACTATGCCATACTGAACAATATTCCTGTCCCTTTGGTAACAGCAA TAAAAAATGAAGCGTTGAAACTTAAGCTTTTAGAAAAATCAACAGGTATTCACTTGAGCCTTAAAGGGAAACAATTTGTT GAAAATGAATTGGGGTATAAAGGGATTAATATAAAGTTATATAAAACATTAAATATCAATCATGTTGACAAGGTAATGGA GCGATTATCATTAGATCTTAATAATATCTTTGAGAACAGGCCAGAGGCAGATGTATCTGTTGACCAATCTAAATGTACTC TGGAAACTGCTATAAAAAGAGCTCTATTATGCCTTGAAAATAATTGTTTGATTGGAAAAAATATTCTCTGTGTCGGGGAT GATGATTTGATTAGCGTTTCCATAGGAATGATGTTGCATACTTTATATAGCGGCAACATGAACCTATGTAAAACTAAAAT CTATGTTTTAGACAGTGATCAAAGAATATTAGATTATATTTGTGAAATTGCAAAACTATATGACTTACCTATTAATTGCT ACAATATTGATTTCCGTGACTCAATCCCAAATGAGTATATTAGTAAAATGGATTGCTTTTACACAGATCCTCCGTATACA TTATCAGGAATGAAGTTATTCTTATCAAGAGGATTGGAGTGCCTAAAAAATTCTGTTTCTTTGAATGTGTTCTTATCCTA CGCTCATAAATCACAAGAAGAAATGCTGAAAATTCACAAGATGTTTATCGAATTAGGTCTATCTGCGTTAAGAATTATGC CCAAATTTAATCGTTATGAAGGCGCAGGTATTTTAGGAAATAGCAGCCAAATGTTTTTATTGAAGACAACCTTAGCGGCA AGATCGCCAATTATCGGGGAAAAATTTAATATTCCAATATACACAGGAGAAATAAAAAAAACACGTCGGAAATACAGCTG CAATAACTGTAACACTATACATTATATTAGCTTAGAAGATACCTACAGTACAATAGAAAAATTAAAAACTTCCGGTTGTA CAATTTGTGGCCACCATTTCTTCAATCTCGTTAGCAAAAAGGAAATATTAAATGGTGATAGGAAAAGTTACAAATAA
Upstream 100 bases:
>100_bases AAGCTAGTATTGCAATACAGTATGATTGTGAAACAACAATATTAATTTTTTGTAATATGTACGGCTAAAAAAAGAATTAT AAAAAGTGGTAGGTGCAATA
Downstream 100 bases:
>100_bases TGCTTTATATATAATTACAGTATTTTAAAAAGAAATTTCAATCCTCTCTTTTCAAATTGATGCAATACTTGATATGAATT TTTACAAAATTTAAGATATA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 398; Mature: 398
Protein sequence:
>398_residues MRNNYIDIIYQNVKIQEGRQAIEKLLIDFYFARGYSSKDYAILNNIPVPLVTAIKNEALKLKLLEKSTGIHLSLKGKQFV ENELGYKGINIKLYKTLNINHVDKVMERLSLDLNNIFENRPEADVSVDQSKCTLETAIKRALLCLENNCLIGKNILCVGD DDLISVSIGMMLHTLYSGNMNLCKTKIYVLDSDQRILDYICEIAKLYDLPINCYNIDFRDSIPNEYISKMDCFYTDPPYT LSGMKLFLSRGLECLKNSVSLNVFLSYAHKSQEEMLKIHKMFIELGLSALRIMPKFNRYEGAGILGNSSQMFLLKTTLAA RSPIIGEKFNIPIYTGEIKKTRRKYSCNNCNTIHYISLEDTYSTIEKLKTSGCTICGHHFFNLVSKKEILNGDRKSYK
Sequences:
>Translated_398_residues MRNNYIDIIYQNVKIQEGRQAIEKLLIDFYFARGYSSKDYAILNNIPVPLVTAIKNEALKLKLLEKSTGIHLSLKGKQFV ENELGYKGINIKLYKTLNINHVDKVMERLSLDLNNIFENRPEADVSVDQSKCTLETAIKRALLCLENNCLIGKNILCVGD DDLISVSIGMMLHTLYSGNMNLCKTKIYVLDSDQRILDYICEIAKLYDLPINCYNIDFRDSIPNEYISKMDCFYTDPPYT LSGMKLFLSRGLECLKNSVSLNVFLSYAHKSQEEMLKIHKMFIELGLSALRIMPKFNRYEGAGILGNSSQMFLLKTTLAA RSPIIGEKFNIPIYTGEIKKTRRKYSCNNCNTIHYISLEDTYSTIEKLKTSGCTICGHHFFNLVSKKEILNGDRKSYK >Mature_398_residues MRNNYIDIIYQNVKIQEGRQAIEKLLIDFYFARGYSSKDYAILNNIPVPLVTAIKNEALKLKLLEKSTGIHLSLKGKQFV ENELGYKGINIKLYKTLNINHVDKVMERLSLDLNNIFENRPEADVSVDQSKCTLETAIKRALLCLENNCLIGKNILCVGD DDLISVSIGMMLHTLYSGNMNLCKTKIYVLDSDQRILDYICEIAKLYDLPINCYNIDFRDSIPNEYISKMDCFYTDPPYT LSGMKLFLSRGLECLKNSVSLNVFLSYAHKSQEEMLKIHKMFIELGLSALRIMPKFNRYEGAGILGNSSQMFLLKTTLAA RSPIIGEKFNIPIYTGEIKKTRRKYSCNNCNTIHYISLEDTYSTIEKLKTSGCTICGHHFFNLVSKKEILNGDRKSYK
Specific function: Unknown
COG id: COG1568
COG function: function code R; Predicted methyltransferases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002723 - InterPro: IPR014435 - InterPro: IPR011991 [H]
Pfam domain/function: PF01861 DUF43 [H]
EC number: NA
Molecular weight: Translated: 45551; Mature: 45551
Theoretical pI: Translated: 8.64; Mature: 8.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 3.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRNNYIDIIYQNVKIQEGRQAIEKLLIDFYFARGYSSKDYAILNNIPVPLVTAIKNEALK CCCCEEEEEEECCEEHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHCCCCEE LKLLEKSTGIHLSLKGKQFVENELGYKGINIKLYKTLNINHVDKVMERLSLDLNNIFENR EEEEECCCCEEEEECCHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHCCCHHHHHCCC PEADVSVDQSKCTLETAIKRALLCLENNCLIGKNILCVGDDDLISVSIGMMLHTLYSGNM CCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCEEHHHHHHHHHHHHCCCC NLCKTKIYVLDSDQRILDYICEIAKLYDLPINCYNIDFRDSIPNEYISKMDCFYTDPPYT CEEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHCCCEECCCCCC LSGMKLFLSRGLECLKNSVSLNVFLSYAHKSQEEMLKIHKMFIELGLSALRIMPKFNRYE HHHHHHHHHHHHHHHHCCCEEEEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC GAGILGNSSQMFLLKTTLAARSPIIGEKFNIPIYTGEIKKTRRKYSCNNCNTIHYISLED CCEEECCCCCEEEEEEHHHHCCCCCCCEECCEEEECHHHHHHHHCCCCCCCEEEEEEECH TYSTIEKLKTSGCTICGHHFFNLVSKKEILNGDRKSYK HHHHHHHHHHCCCEEEHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MRNNYIDIIYQNVKIQEGRQAIEKLLIDFYFARGYSSKDYAILNNIPVPLVTAIKNEALK CCCCEEEEEEECCEEHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHCCCCEE LKLLEKSTGIHLSLKGKQFVENELGYKGINIKLYKTLNINHVDKVMERLSLDLNNIFENR EEEEECCCCEEEEECCHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHCCCHHHHHCCC PEADVSVDQSKCTLETAIKRALLCLENNCLIGKNILCVGDDDLISVSIGMMLHTLYSGNM CCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCEEHHHHHHHHHHHHCCCC NLCKTKIYVLDSDQRILDYICEIAKLYDLPINCYNIDFRDSIPNEYISKMDCFYTDPPYT CEEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHCCCEECCCCCC LSGMKLFLSRGLECLKNSVSLNVFLSYAHKSQEEMLKIHKMFIELGLSALRIMPKFNRYE HHHHHHHHHHHHHHHHCCCEEEEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC GAGILGNSSQMFLLKTTLAARSPIIGEKFNIPIYTGEIKKTRRKYSCNNCNTIHYISLED CCEEECCCCCEEEEEEHHHHCCCCCCCEECCEEEECHHHHHHHHCCCCCCCEEEEEEECH TYSTIEKLKTSGCTICGHHFFNLVSKKEILNGDRKSYK HHHHHHHHHHCCCEEEHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]