| Definition | Methylobacterium radiotolerans JCM 2831 chromosome, complete genome. |
|---|---|
| Accession | NC_010505 |
| Length | 6,077,833 |
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The map label for this gene is lptD [H]
Identifier: 170746988
GI number: 170746988
Start: 594472
End: 597051
Strand: Reverse
Name: lptD [H]
Synonym: Mrad2831_0554
Alternate gene names: 170746988
Gene position: 597051-594472 (Counterclockwise)
Preceding gene: 170746989
Following gene: 170746987
Centisome position: 9.82
GC content: 68.26
Gene sequence:
>2580_bases TTGCGTAAGGTCGCCGACATCCTGCGGAAGGCTGGTTTCCGGGCCGCGCTGGCGCTCGCCGCGCCGCTGGCGGGGGGCCT GTCCGCCCATGCCCAGGGCCTGCCCGCCGTCGCGGCCGGCAAGCCCGGCGACAAGCTGCTCGTCGAGGCCGACGAGCTGA TCTACGACAACGACCGGGGCACAGTGACGGCGCGGGGCAACGCCGAGCTGCATTACGGCCCGCGGACCCTGCAGGCCGAC CGCGTGCGCTACGACCGGAATTCCGGCCGGGTCTTCGCTGAGGGCAATGTCCGCCTCACCGAGGCCGACGGCGGCGTCGT GACCGGCGCGCGCATGGAACTCACCGACGACTTCAAGACCGGCTTCGTCGACGCTTTCCGCGGCCAGCAGACCGTCCAGC GCAAGTTCGAGACGGTGCGCACCCGGTTCTCCGCGCCGCGGGCCGAGCGCCTGAACGGCGAGCAGACCAGCTTCGAGTCC GGCAGCTACACGGCCTGCGAGCCGTGCAAGGACAACCCTGAGACGCCGCCGCTGTGGCAGATCAAGGCGAAGAAGATCAT CCACGACAACGAGACCCACACGGTCTACTTCGACGATTCGACGCTCGAGATCGCCGGCATCCCGGTGGCCTACCTGCCGT ATTTCGAGGCGCCGGACCCGACGGTGAAGCGCAAGACCGGCTTCCTGACGCCGCGCTTCGTCACGACGACCGCGCTCGGC AACGGCGTGTCGCTCCCGTACTTCATCAACCTCGCGCCGAGCTACGACCTGACGCTGACGCCGACCCTGCTCAGCCGCCA GGGCCTGCTCGCGCAGGGCGAGTTCCGCCAGCGGATCGACAACGGCTTCTACAACATCCGCCTGTCGGGCATCTCGCAGA CGACGCCCTCGGCCTTCCTCCCGAGCCCGCTCGGCGCCGGCGAGCGGGACTTCCGCGGCTCGGTCGAATCGCAGGGCCGG TTCTACATCAACCCGCGCTGGCGCACGGGCTGGGACCTTGTCGGCGTGACCGACAAGTGGTTCCTCGACAATTACCGGAT CCGCAACCAGAACATCACCACGGACTATTTCCGCGAGGCGACCTCGACCGCCTTCCTGATCGGCCAGGGCGACCGCTCGT GGTTCGAGGCCCGGGGCTACTACTTCAAGGGCCTGTCGAGCTTCGATTGGCAGAAGCAGCAGCCGATCGTCGCGCCGGTG ATCGACTACGACAAGCGGGTCAACGGCCCCTCGGAGATCGGCGGCGAGGTGCGCTTCCAGGCGAACATCACCAGCCTGAC CCGCGAGACGACCCAGTACCAGGGCCTGCCGCGGACCTCGAGCTACCTGTTCTCGCCGAGCGTCAACGGTGTCAGCTTCC CGCTCTACCAGACCTGCACGGTCTTCCAGCGCGGCCTGTGCGCCATCGACGGGCTTGCCGGCACCAACACCCGCGCCTCC GCGGAGCTGTCCTGGCGCCGCAGCTTCATCGACGACTGGGGCCAGAAGTTCACGCCGTTCGCGTACCTGCGCACCGACGC GTTCTTCACCAACCCGAGCTTCTCGGGCTACCAGAACGACTTGGCCCCGCAGGTCGCCAAGATCGACGACGGCTTCGCCG GGCGGGTCATGCCGGCGGTCGGCCTCGACTACCGCTACCCGTTCGTCGCCAATTTCGGCGCGCTCGGCGTCCACACCCTG GAGCCGATCGGCCAGATCATCGCGCGCCCGTCCGAGACCCGGATCGGCCGCCTGCCGAACGAGGACGCGCAGAGCCTCGT CTTCGACGACACCTCGCTGTTCGAGTGGGACAAGTTCTCGGGCTACGACCGGGTCGAGGGCGGCGTGCGCACCAACCTCG GCGGCCAGTACTCCGTCGTGACGCCGTCGGGCTGGTACGCGAACGTCCTGTTCGGCGAGTCCATCCAGCTCGCGGGCGTC AACTCGTTCCGCCGGGGCGACATCGCCAATGTCGGCCTGGATTCCGGGCTCGAGACGCAGCGGTCGGACTTCGTCGGCCG CTTCCAGGTCTCGCCCAACCAGAACATCACGTTCATCAGCCGGGCCCGGTTCAACCAGTCCGACTTCCACGTGGCGCGGT TCGAGACCGGCGCGACGGCGCGGTTCGCGCCGTTCCTGCCGCTCACCGTCTCGGCCTTCTACTCGTACTACGAGGCGCAG CCGCTGCTGGGCTACAGCCACTACCGCGAGGGCATCACCGCCACCGCGACCTACAACATCACGCCGAACTGGTTCGTGTC GGGCTCGCTGCTCGTCGACCTGACCCACTACCTCGACGTGCGCAACACCTACACGGACGCGCTGAGCTCGTACCTGGCAA ACCCGATCGGGACGGTGCCGATCTACCAGAACCCGGGCCGCTTCTACCTGTCGGGCGCAAGCTTCGGCGGCGGCTACCAG GATGAGTGCACCACCGTCTCGCTGAACTACATCAACTCGCCGATCGCCACCGCGACGGGCGTGCGCGAGCGCAACCAGAC GGTGCTGCTGCGGGTCGAGCTGAAGACGCTGGGTGAGGCCGACCTGCGCCAGAACGTCGGCACCGCCACCACCGCGGACG GCATCGCCTCGGTGCGGTGA
Upstream 100 bases:
>100_bases TTCTGTACCAGGAAGACGGCTGACTTCCGCGATCCTTCGCGGGACGGGAGACGGGTGTTGAGGTTGGTGGCGGCAGACGT CACAGGGGTTGGGACGCGCG
Downstream 100 bases:
>100_bases GGAACCGGGACCGGCGGCGCTCCGTTTCGGCGCCGCGTCCGTCGCGGTCCCATCGCGCGCCGGGCGGCGGGATCCGGCTC CGCGCACGGCCGCGCTCTGC
Product: organic solvent tolerance protein
Products: NA
Alternate protein names: Organic solvent tolerance protein [H]
Number of amino acids: Translated: 859; Mature: 859
Protein sequence:
>859_residues MRKVADILRKAGFRAALALAAPLAGGLSAHAQGLPAVAAGKPGDKLLVEADELIYDNDRGTVTARGNAELHYGPRTLQAD RVRYDRNSGRVFAEGNVRLTEADGGVVTGARMELTDDFKTGFVDAFRGQQTVQRKFETVRTRFSAPRAERLNGEQTSFES GSYTACEPCKDNPETPPLWQIKAKKIIHDNETHTVYFDDSTLEIAGIPVAYLPYFEAPDPTVKRKTGFLTPRFVTTTALG NGVSLPYFINLAPSYDLTLTPTLLSRQGLLAQGEFRQRIDNGFYNIRLSGISQTTPSAFLPSPLGAGERDFRGSVESQGR FYINPRWRTGWDLVGVTDKWFLDNYRIRNQNITTDYFREATSTAFLIGQGDRSWFEARGYYFKGLSSFDWQKQQPIVAPV IDYDKRVNGPSEIGGEVRFQANITSLTRETTQYQGLPRTSSYLFSPSVNGVSFPLYQTCTVFQRGLCAIDGLAGTNTRAS AELSWRRSFIDDWGQKFTPFAYLRTDAFFTNPSFSGYQNDLAPQVAKIDDGFAGRVMPAVGLDYRYPFVANFGALGVHTL EPIGQIIARPSETRIGRLPNEDAQSLVFDDTSLFEWDKFSGYDRVEGGVRTNLGGQYSVVTPSGWYANVLFGESIQLAGV NSFRRGDIANVGLDSGLETQRSDFVGRFQVSPNQNITFISRARFNQSDFHVARFETGATARFAPFLPLTVSAFYSYYEAQ PLLGYSHYREGITATATYNITPNWFVSGSLLVDLTHYLDVRNTYTDALSSYLANPIGTVPIYQNPGRFYLSGASFGGGYQ DECTTVSLNYINSPIATATGVRERNQTVLLRVELKTLGEADLRQNVGTATTADGIASVR
Sequences:
>Translated_859_residues MRKVADILRKAGFRAALALAAPLAGGLSAHAQGLPAVAAGKPGDKLLVEADELIYDNDRGTVTARGNAELHYGPRTLQAD RVRYDRNSGRVFAEGNVRLTEADGGVVTGARMELTDDFKTGFVDAFRGQQTVQRKFETVRTRFSAPRAERLNGEQTSFES GSYTACEPCKDNPETPPLWQIKAKKIIHDNETHTVYFDDSTLEIAGIPVAYLPYFEAPDPTVKRKTGFLTPRFVTTTALG NGVSLPYFINLAPSYDLTLTPTLLSRQGLLAQGEFRQRIDNGFYNIRLSGISQTTPSAFLPSPLGAGERDFRGSVESQGR FYINPRWRTGWDLVGVTDKWFLDNYRIRNQNITTDYFREATSTAFLIGQGDRSWFEARGYYFKGLSSFDWQKQQPIVAPV IDYDKRVNGPSEIGGEVRFQANITSLTRETTQYQGLPRTSSYLFSPSVNGVSFPLYQTCTVFQRGLCAIDGLAGTNTRAS AELSWRRSFIDDWGQKFTPFAYLRTDAFFTNPSFSGYQNDLAPQVAKIDDGFAGRVMPAVGLDYRYPFVANFGALGVHTL EPIGQIIARPSETRIGRLPNEDAQSLVFDDTSLFEWDKFSGYDRVEGGVRTNLGGQYSVVTPSGWYANVLFGESIQLAGV NSFRRGDIANVGLDSGLETQRSDFVGRFQVSPNQNITFISRARFNQSDFHVARFETGATARFAPFLPLTVSAFYSYYEAQ PLLGYSHYREGITATATYNITPNWFVSGSLLVDLTHYLDVRNTYTDALSSYLANPIGTVPIYQNPGRFYLSGASFGGGYQ DECTTVSLNYINSPIATATGVRERNQTVLLRVELKTLGEADLRQNVGTATTADGIASVR >Mature_859_residues MRKVADILRKAGFRAALALAAPLAGGLSAHAQGLPAVAAGKPGDKLLVEADELIYDNDRGTVTARGNAELHYGPRTLQAD RVRYDRNSGRVFAEGNVRLTEADGGVVTGARMELTDDFKTGFVDAFRGQQTVQRKFETVRTRFSAPRAERLNGEQTSFES GSYTACEPCKDNPETPPLWQIKAKKIIHDNETHTVYFDDSTLEIAGIPVAYLPYFEAPDPTVKRKTGFLTPRFVTTTALG NGVSLPYFINLAPSYDLTLTPTLLSRQGLLAQGEFRQRIDNGFYNIRLSGISQTTPSAFLPSPLGAGERDFRGSVESQGR FYINPRWRTGWDLVGVTDKWFLDNYRIRNQNITTDYFREATSTAFLIGQGDRSWFEARGYYFKGLSSFDWQKQQPIVAPV IDYDKRVNGPSEIGGEVRFQANITSLTRETTQYQGLPRTSSYLFSPSVNGVSFPLYQTCTVFQRGLCAIDGLAGTNTRAS AELSWRRSFIDDWGQKFTPFAYLRTDAFFTNPSFSGYQNDLAPQVAKIDDGFAGRVMPAVGLDYRYPFVANFGALGVHTL EPIGQIIARPSETRIGRLPNEDAQSLVFDDTSLFEWDKFSGYDRVEGGVRTNLGGQYSVVTPSGWYANVLFGESIQLAGV NSFRRGDIANVGLDSGLETQRSDFVGRFQVSPNQNITFISRARFNQSDFHVARFETGATARFAPFLPLTVSAFYSYYEAQ PLLGYSHYREGITATATYNITPNWFVSGSLLVDLTHYLDVRNTYTDALSSYLANPIGTVPIYQNPGRFYLSGASFGGGYQ DECTTVSLNYINSPIATATGVRERNQTVLLRVELKTLGEADLRQNVGTATTADGIASVR
Specific function: Involved in the assembly of LPS in the outer leaflet of the outer membrane. Determines N-hexane tolerance and is involved in outer membrane permeability. Essential for envelope biogenesis [H]
COG id: COG1452
COG function: function code M; Organic solvent tolerance protein OstA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the lptD family [H]
Homologues:
Organism=Escherichia coli, GI1786239, Length=129, Percent_Identity=32.5581395348837, Blast_Score=77, Evalue=5e-15,
Paralogues:
None
Copy number: 60 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020889 - InterPro: IPR007543 [H]
Pfam domain/function: PF04453 OstA_C [H]
EC number: NA
Molecular weight: Translated: 95120; Mature: 95120
Theoretical pI: Translated: 6.95; Mature: 6.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKVADILRKAGFRAALALAAPLAGGLSAHAQGLPAVAAGKPGDKLLVEADELIYDNDRG CCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHCCCCEEECCCCCCEEEEEECCEEEECCCC TVTARGNAELHYGPRTLQADRVRYDRNSGRVFAEGNVRLTEADGGVVTGARMELTDDFKT EEEECCCCEEEECCCCCCHHHEEEECCCCEEEEECCEEEEECCCCEEECCEEEECCCHHH GFVDAFRGQQTVQRKFETVRTRFSAPRAERLNGEQTSFESGSYTACEPCKDNPETPPLWQ HHHHHHCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCEEE IKAKKIIHDNETHTVYFDDSTLEIAGIPVAYLPYFEAPDPTVKRKTGFLTPRFVTTTALG EEEEEEEECCCCEEEEECCCEEEEECCCEEECCCCCCCCCCCHHHCCCCCCCEEEEEECC NGVSLPYFINLAPSYDLTLTPTLLSRQGLLAQGEFRQRIDNGFYNIRLSGISQTTPSAFL CCCCCCEEEEECCCCCEEECHHHHCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCC PSPLGAGERDFRGSVESQGRFYINPRWRTGWDLVGVTDKWFLDNYRIRNQNITTDYFREA CCCCCCCCHHHCCCCCCCCEEEECCCCCCCCEEEECCHHEECCCEEEECCCCCHHHHHHC TSTAFLIGQGDRSWFEARGYYFKGLSSFDWQKQQPIVAPVIDYDKRVNGPSEIGGEVRFQ CCEEEEEECCCCCHHHHCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCHHHCCCEEEEE ANITSLTRETTQYQGLPRTSSYLFSPSVNGVSFPLYQTCTVFQRGLCAIDGLAGTNTRAS EEHHHHHHHHHHHCCCCCCCCEEECCCCCCEECCHHHHHHHHHCCCEEECCCCCCCCCCC AELSWRRSFIDDWGQKFTPFAYLRTDAFFTNPSFSGYQNDLAPQVAKIDDGFAGRVMPAV CHHHHHHHHHHHHCCCCCCEEEEEECEEEECCCCCCCCHHCCCHHHHCCCCCCCCEEHHC GLDYRYPFVANFGALGVHTLEPIGQIIARPSETRIGRLPNEDAQSLVFDDTSLFEWDKFS CCCCCCCHHCCCCCCCCHHHHHHHHHHCCCCHHHCCCCCCCCCCEEEECCCCCCCCCCCC GYDRVEGGVRTNLGGQYSVVTPSGWYANVLFGESIQLAGVNSFRRGDIANVGLDSGLETQ CCCHHCCCEEECCCCEEEEECCCCCEEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCH RSDFVGRFQVSPNQNITFISRARFNQSDFHVARFETGATARFAPFLPLTVSAFYSYYEAQ HHCCEEEEEECCCCCEEEEEECCCCCCCCEEEEECCCCCEEECCCCHHHHHHHHHHHHCC PLLGYSHYREGITATATYNITPNWFVSGSLLVDLTHYLDVRNTYTDALSSYLANPIGTVP CCCCHHHHHCCEEEEEEEECCCCEEECCEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCE IYQNPGRFYLSGASFGGGYQDECTTVSLNYINSPIATATGVRERNQTVLLRVELKTLGEA EEECCCEEEEECCCCCCCCCCCEEEEEEECCCCCCHHHCCCCCCCCEEEEEEEECCCCCH DLRQNVGTATTADGIASVR HHHHCCCCCCCCCCCCCCC >Mature Secondary Structure MRKVADILRKAGFRAALALAAPLAGGLSAHAQGLPAVAAGKPGDKLLVEADELIYDNDRG CCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHCCCCEEECCCCCCEEEEEECCEEEECCCC TVTARGNAELHYGPRTLQADRVRYDRNSGRVFAEGNVRLTEADGGVVTGARMELTDDFKT EEEECCCCEEEECCCCCCHHHEEEECCCCEEEEECCEEEEECCCCEEECCEEEECCCHHH GFVDAFRGQQTVQRKFETVRTRFSAPRAERLNGEQTSFESGSYTACEPCKDNPETPPLWQ HHHHHHCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCEEE IKAKKIIHDNETHTVYFDDSTLEIAGIPVAYLPYFEAPDPTVKRKTGFLTPRFVTTTALG EEEEEEEECCCCEEEEECCCEEEEECCCEEECCCCCCCCCCCHHHCCCCCCCEEEEEECC NGVSLPYFINLAPSYDLTLTPTLLSRQGLLAQGEFRQRIDNGFYNIRLSGISQTTPSAFL CCCCCCEEEEECCCCCEEECHHHHCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCC PSPLGAGERDFRGSVESQGRFYINPRWRTGWDLVGVTDKWFLDNYRIRNQNITTDYFREA CCCCCCCCHHHCCCCCCCCEEEECCCCCCCCEEEECCHHEECCCEEEECCCCCHHHHHHC TSTAFLIGQGDRSWFEARGYYFKGLSSFDWQKQQPIVAPVIDYDKRVNGPSEIGGEVRFQ CCEEEEEECCCCCHHHHCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCHHHCCCEEEEE ANITSLTRETTQYQGLPRTSSYLFSPSVNGVSFPLYQTCTVFQRGLCAIDGLAGTNTRAS EEHHHHHHHHHHHCCCCCCCCEEECCCCCCEECCHHHHHHHHHCCCEEECCCCCCCCCCC AELSWRRSFIDDWGQKFTPFAYLRTDAFFTNPSFSGYQNDLAPQVAKIDDGFAGRVMPAV CHHHHHHHHHHHHCCCCCCEEEEEECEEEECCCCCCCCHHCCCHHHHCCCCCCCCEEHHC GLDYRYPFVANFGALGVHTLEPIGQIIARPSETRIGRLPNEDAQSLVFDDTSLFEWDKFS CCCCCCCHHCCCCCCCCHHHHHHHHHHCCCCHHHCCCCCCCCCCEEEECCCCCCCCCCCC GYDRVEGGVRTNLGGQYSVVTPSGWYANVLFGESIQLAGVNSFRRGDIANVGLDSGLETQ CCCHHCCCEEECCCCEEEEECCCCCEEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCH RSDFVGRFQVSPNQNITFISRARFNQSDFHVARFETGATARFAPFLPLTVSAFYSYYEAQ HHCCEEEEEECCCCCEEEEEECCCCCCCCEEEEECCCCCEEECCCCHHHHHHHHHHHHCC PLLGYSHYREGITATATYNITPNWFVSGSLLVDLTHYLDVRNTYTDALSSYLANPIGTVP CCCCHHHHHCCEEEEEEEECCCCEEECCEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCE IYQNPGRFYLSGASFGGGYQDECTTVSLNYINSPIATATGVRERNQTVLLRVELKTLGEA EEECCCEEEEECCCCCCCCCCCEEEEEEECCCCCCHHHCCCCCCCCEEEEEEEECCCCCH DLRQNVGTATTADGIASVR HHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA