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The map label for this gene is cydA [H]

Identifier: 170746642

GI number: 170746642

Start: 195675

End: 197117

Strand: Reverse

Name: cydA [H]

Synonym: Mrad2831_0193

Alternate gene names: 170746642

Gene position: 197117-195675 (Counterclockwise)

Preceding gene: 170746644

Following gene: 170746641

Centisome position: 3.24

GC content: 70.82

Gene sequence:

>1443_bases
ATGTCCGCCCTCGAACTGCCGAGTGCAGTCAATCTCGCGCGAGCCCAATTCGCGCTCACCGTCGTCTGGCACTTCCTGTT
CCCGGCCTTCACCATCGGGCTCGCGAGCTATCTCGCCGTGCTCGAAGGCTTCTGGCTGCGGACGGGCAAGGCCGTCTATC
TCGACACCTACCGCTACTGGCTCCGCATCTTCGCCGTCGCCTTCGCGATGGGTGTCGTGTCGGGCCTGGTCATGAGCTAC
CAGTTCGGCACGAACTGGTCGGTCTTCGCCGACCGGACGGCGCCGGTGCTCGGGCCGCTCCTCGGCTACGAGGTGCTCAC
GGCCTTCTTCCTGGAAGCCGGCTTCCTCGGCGTCATGCTGTTCGGCTTGGAACGGGTCGGCAAGGGACTGCACTTCCTGG
CGACCTGCCTCGTCGCCGTCGGCACCCTGACCTCGGCGTTCTGGATCCTCTCGGCCAATTCCTGGATGCAGACGCCCACC
GGCCACGTCGTCGGGCCGGACGGCCGCTTCAACCCGGCCGACTGGTGGGCGATCGTCTTCAACCCGTCCTTCCCCTACCG
CTTCGCCCACACGGTCACGGGCGCCTACCTCACCACCGCGATGATCGTCGGCGCCGTGGGCGCGTGGCACCTGCTGCGGG
ACCGGGCCAATCCCCGGGCCCGGCTGATGTTCTCGATGGCCATGTGGATGGCCGCCGCGGTGGCGCCGGCCCAGCTTGTG
ATCGGCGACCTGCACGGTGGCAATTCCTACGCGCACCAGCCCGCCAAGGTCGCGGCCATGGAGGGGCACTTCCGGACGGA
GCGCCGGGCCCCCGCGATCCTGTTCGGCTGGCCGGACGCGGAGGCGGGTGAGGTGCGCGACCGGATCGGGATTCCCGGCC
TCGCCAGCCTTTACCTGACCCACGAGCTCGACGGTGAGGTCCGCGGGCTCAACGACATGCCGCGCGACCTCTGGCCGACC
AACCTCCCCCTGGTCTTCTGGTCGTTCCGGATCATGGTCGGCCTCGGCCTGCTGATGATCGCCCTCGGCCTCGCCGCGCT
GTGGTTGCGCCATCGGGGGCGGCTCTATGACACCCCCTGGCTGCACCGCTTCGCCGTCGGCATGGGACCGTCCGGCCTGA
TCGCCGTCACGGCCGGCTGGACGGTGACGGAGGCCGGCCGTCAGCCCTTCACGGTCTACGGCGCGCTGCGCACGATCGAC
AGCGTGTCCCCGGTGGCGGCCCCGGCCGTCGCGGCGTCGCTGGCGGCCTTCGCGGCGGTGTACCTCGCGGTGTTCGGCGC
GGGCATCTGGTACCTCCTGCACCTGTTCAACCAAGCGCCGCATGCCCACGAGCCCGGGCCGCCGCCCGGACAGCCGATCC
GCACCGCCGGCATCACGCCCGCCCCCGCCCTCGTCGCCGGCGCACAGGATGCCGGCCGCCCCCTCGCGCAGCCCGCGGAG
TAG

Upstream 100 bases:

>100_bases
CGCCGCGCTCAGAATCGCGGCCCCGGCCTTGAGCTGAATCAACGCGTCCGCGTCCGGGCCGCGGCAGAGCTGCCGCGTTT
GTCCCCCCCTGGAGACCGCG

Downstream 100 bases:

>100_bases
TCCCGATGTCCCTCGATCTCACGCTCATCTGGGCGCTCCTCATCGCCACCGCGGTCTTCCTCTACGTGGTGATGGATGGC
TTCGACCTCGGGGTCGGCAT

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 480; Mature: 479

Protein sequence:

>480_residues
MSALELPSAVNLARAQFALTVVWHFLFPAFTIGLASYLAVLEGFWLRTGKAVYLDTYRYWLRIFAVAFAMGVVSGLVMSY
QFGTNWSVFADRTAPVLGPLLGYEVLTAFFLEAGFLGVMLFGLERVGKGLHFLATCLVAVGTLTSAFWILSANSWMQTPT
GHVVGPDGRFNPADWWAIVFNPSFPYRFAHTVTGAYLTTAMIVGAVGAWHLLRDRANPRARLMFSMAMWMAAAVAPAQLV
IGDLHGGNSYAHQPAKVAAMEGHFRTERRAPAILFGWPDAEAGEVRDRIGIPGLASLYLTHELDGEVRGLNDMPRDLWPT
NLPLVFWSFRIMVGLGLLMIALGLAALWLRHRGRLYDTPWLHRFAVGMGPSGLIAVTAGWTVTEAGRQPFTVYGALRTID
SVSPVAAPAVAASLAAFAAVYLAVFGAGIWYLLHLFNQAPHAHEPGPPPGQPIRTAGITPAPALVAGAQDAGRPLAQPAE

Sequences:

>Translated_480_residues
MSALELPSAVNLARAQFALTVVWHFLFPAFTIGLASYLAVLEGFWLRTGKAVYLDTYRYWLRIFAVAFAMGVVSGLVMSY
QFGTNWSVFADRTAPVLGPLLGYEVLTAFFLEAGFLGVMLFGLERVGKGLHFLATCLVAVGTLTSAFWILSANSWMQTPT
GHVVGPDGRFNPADWWAIVFNPSFPYRFAHTVTGAYLTTAMIVGAVGAWHLLRDRANPRARLMFSMAMWMAAAVAPAQLV
IGDLHGGNSYAHQPAKVAAMEGHFRTERRAPAILFGWPDAEAGEVRDRIGIPGLASLYLTHELDGEVRGLNDMPRDLWPT
NLPLVFWSFRIMVGLGLLMIALGLAALWLRHRGRLYDTPWLHRFAVGMGPSGLIAVTAGWTVTEAGRQPFTVYGALRTID
SVSPVAAPAVAASLAAFAAVYLAVFGAGIWYLLHLFNQAPHAHEPGPPPGQPIRTAGITPAPALVAGAQDAGRPLAQPAE
>Mature_479_residues
SALELPSAVNLARAQFALTVVWHFLFPAFTIGLASYLAVLEGFWLRTGKAVYLDTYRYWLRIFAVAFAMGVVSGLVMSYQ
FGTNWSVFADRTAPVLGPLLGYEVLTAFFLEAGFLGVMLFGLERVGKGLHFLATCLVAVGTLTSAFWILSANSWMQTPTG
HVVGPDGRFNPADWWAIVFNPSFPYRFAHTVTGAYLTTAMIVGAVGAWHLLRDRANPRARLMFSMAMWMAAAVAPAQLVI
GDLHGGNSYAHQPAKVAAMEGHFRTERRAPAILFGWPDAEAGEVRDRIGIPGLASLYLTHELDGEVRGLNDMPRDLWPTN
LPLVFWSFRIMVGLGLLMIALGLAALWLRHRGRLYDTPWLHRFAVGMGPSGLIAVTAGWTVTEAGRQPFTVYGALRTIDS
VSPVAAPAVAASLAAFAAVYLAVFGAGIWYLLHLFNQAPHAHEPGPPPGQPIRTAGITPAPALVAGAQDAGRPLAQPAE

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=504, Percent_Identity=32.5396825396825, Blast_Score=236, Evalue=3e-63,
Organism=Escherichia coli, GI1787212, Length=319, Percent_Identity=40.4388714733542, Blast_Score=227, Evalue=1e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 51939; Mature: 51808

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSALELPSAVNLARAQFALTVVWHFLFPAFTIGLASYLAVLEGFWLRTGKAVYLDTYRYW
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHH
LRIFAVAFAMGVVSGLVMSYQFGTNWSVFADRTAPVLGPLLGYEVLTAFFLEAGFLGVML
HHHHHHHHHHHHHHHHHHHEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FGLERVGKGLHFLATCLVAVGTLTSAFWILSANSWMQTPTGHVVGPDGRFNPADWWAIVF
HHHHHHCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCEECCCCCCCCCCEEEEEE
NPSFPYRFAHTVTGAYLTTAMIVGAVGAWHLLRDRANPRARLMFSMAMWMAAAVAPAQLV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHE
IGDLHGGNSYAHQPAKVAAMEGHFRTERRAPAILFGWPDAEAGEVRDRIGIPGLASLYLT
EEECCCCCCCCCCCHHHHHHCCCHHHHCCCCEEEEECCCCCCHHHHHHCCCCCHHHHEEE
HELDGEVRGLNDMPRDLWPTNLPLVFWSFRIMVGLGLLMIALGLAALWLRHRGRLYDTPW
EECCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
LHRFAVGMGPSGLIAVTAGWTVTEAGRQPFTVYGALRTIDSVSPVAAPAVAASLAAFAAV
HHHHHHCCCCCCEEEEEECCEEECCCCCCEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
YLAVFGAGIWYLLHLFNQAPHAHEPGPPPGQPIRTAGITPAPALVAGAQDAGRPLAQPAE
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SALELPSAVNLARAQFALTVVWHFLFPAFTIGLASYLAVLEGFWLRTGKAVYLDTYRYW
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHH
LRIFAVAFAMGVVSGLVMSYQFGTNWSVFADRTAPVLGPLLGYEVLTAFFLEAGFLGVML
HHHHHHHHHHHHHHHHHHHEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FGLERVGKGLHFLATCLVAVGTLTSAFWILSANSWMQTPTGHVVGPDGRFNPADWWAIVF
HHHHHHCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCEECCCCCCCCCCEEEEEE
NPSFPYRFAHTVTGAYLTTAMIVGAVGAWHLLRDRANPRARLMFSMAMWMAAAVAPAQLV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHE
IGDLHGGNSYAHQPAKVAAMEGHFRTERRAPAILFGWPDAEAGEVRDRIGIPGLASLYLT
EEECCCCCCCCCCCHHHHHHCCCHHHHCCCCEEEEECCCCCCHHHHHHCCCCCHHHHEEE
HELDGEVRGLNDMPRDLWPTNLPLVFWSFRIMVGLGLLMIALGLAALWLRHRGRLYDTPW
EECCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
LHRFAVGMGPSGLIAVTAGWTVTEAGRQPFTVYGALRTIDSVSPVAAPAVAASLAAFAAV
HHHHHHCCCCCCEEEEEECCEEECCCCCCEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
YLAVFGAGIWYLLHLFNQAPHAHEPGPPPGQPIRTAGITPAPALVAGAQDAGRPLAQPAE
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]